KEGG   Danio rerio (zebrafish): 560313
Entry
560313            CDS       T01004                                 
Symbol
cul4b
Name
(RefSeq) cullin-4B
  KO
K10609  cullin 4
Organism
dre  Danio rerio (zebrafish)
Pathway
dre03420  Nucleotide excision repair
dre04120  Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:dre00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   04120 Ubiquitin mediated proteolysis
    560313 (cul4b)
  09124 Replication and repair
   03420 Nucleotide excision repair
    560313 (cul4b)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04121 Ubiquitin system [BR:dre04121]
    560313 (cul4b)
   03400 DNA repair and recombination proteins [BR:dre03400]
    560313 (cul4b)
  09183 Protein families: signaling and cellular processes
   04147 Exosome [BR:dre04147]
    560313 (cul4b)
Ubiquitin system [BR:dre04121]
 Ubiquitin ligases (E3)
  Multi subunit type E3
   Cul4 complex
    Cullin
     560313 (cul4b)
DNA repair and recombination proteins [BR:dre03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     Cul4-DDB2 complex
      560313 (cul4b)
    TCR (transcription coupled repair) factors
     Cul4-CSA complex
      560313 (cul4b)
Exosome [BR:dre04147]
 Exosomal proteins
  Exosomal proteins of other body fluids (saliva and urine)
   560313 (cul4b)
SSDB
Motif
Pfam: Cullin Cullin_Nedd8 SecA_SW NurA Mucin2_WxxW DUF3292
Other DBs
NCBI-GeneID: 560313
NCBI-ProteinID: NP_001116316
ZFIN: ZDB-GENE-041008-208
Ensembl: ENSDARG00000060510
UniProt: F8W428
LinkDB
Position
14:33486151..33505709
AA seq 864 aa
MFPTGLPSPNPPPPAQEPRPAASDVHNDSSLTSSKKRKINSSDKEDIDSISSSPKAICNS
SSTTSCSSSSQQQQQQQHIQKKLRFEDPLDLIGLDVKMAEESCNPSESCSKARNVFLPGG
VGHHANGLTKSAGSATFSNSKPGAAKKLVIKNFKEKPKLPENYTNETWQKLKEAVEAIQN
STSIKYNLEELYQAVENLCSHKISAKLYKQLRVVCEDHIKAQIDQFREDALDSVLFLKKI
DKCWQDHCRQMIMIRSIFLFLDRTYVLQNSMLPSIWDMGLELFRFYIISDLKVQSKTIDG
ILLLIERERSGEAVDRSLLRSLLSMLSDLQIYQDSFEQRFLEETNRLYAAEGQRLMQERE
VPEYLHHVNKRLEEEADRVITYLDQSTQKSLIATVEKQLLGEHLTAILQKGLNNLLDENR
IQDLSLLYQLFSRVRGGVQVLLQHWIEYIKAFGSTIVINPEKDKTMVQELLDFKDKVDHI
IDVCFMKNEKFVNGMKEAFETFINKRPNKPAELIAKYVDSKLRAGNKEATDEELEKMLDK
IMIIFRFIYGKDVFEAFYKKDLAKRLLVGKSASVDAEKSMLSKLKHECGAAFTSKLEGMF
KDMELSKDIMVQFKQHMQCQNIPGNIELTVNILTMGYWPTYVPMEVHLPAEMVRLQEIFK
TFYLGKHSGRKLQWQSTLGHCVLKAEFKEGKKELQVSLFQTLVLLMFNEGEEFSLEDIKL
ATGIEDSELRRTLQSLACGKARVLTKIPKSKDVEDGDKFSCNDDFKHKLFRIKINQIQMK
ETVEEQASTTERVFQDRQYQIDAAIVRIMKMRKTLSHNLLVSEVYNQLKFPVKPADLKKR
IESLIDRDYMERDKENPNQYNYVA
NT seq 2595 nt   +upstreamnt  +downstreamnt
atgtttccaacaggtttaccttcccctaatcccccaccgccagcccaagagcccagaccg
gcagcttctgatgttcacaacgacagtagcttaacgtcttctaagaagaggaaaatcaac
agttcagacaaggaagacattgattcaatatcatcgtctcctaaagccatctgcaattcc
tcctccacaacgtcctgctcttccagttcacaacaacagcagcaacaacagcacatccag
aagaagttgaggttcgaggacccgctggatttgatcggactggatgtgaagatggccgag
gagtcctgtaacccatccgaatcctgttcaaaggcgagaaatgtgtttctgcccggcggt
gttgggcatcatgctaacggactgaccaagtctgcgggctccgctaccttctccaacagt
aaacccggtgcagcgaagaaacttgttatcaagaactttaaagaaaagcccaaattacca
gagaattacacaaatgagacctggcagaaactaaaggaggcagtagaggccatacagaac
agcacttcaataaagtacaatctagaggagctctatcaggctgttgaaaacttgtgctct
cataagatatctgccaagctgtataaacagctcagagtggtttgtgaagaccacatcaag
gcacagattgaccagttcagagaggatgccctagacagtgttctgttcctcaagaaaata
gacaaatgttggcaagatcactgcagacaaatgatcatgattaggagtatatttttgttt
ctggatcgcacatatgttttacaaaattctatgctgccatcaatctgggacatgggcttg
gagttgtttcgtttctatatcatcagcgacctgaaggtgcagagtaagacaatcgatggg
attctgcttcttattgagagggagcgaagcggcgaggctgtagaccgcagtcttctgagg
agtcttctgagcatgctctctgacctgcagatttatcaggattcatttgagcagcgcttt
ctggaggagacaaatcgactgtatgctgctgagggccagaggctcatgcaggaaagagag
gtgccagagtatctccatcatgtcaacaaacgtctagaagaagaggcagacagagtcatc
acatacttagaccagagcacacaaaaatccctcattgccacagtggaaaagcagctgctt
ggagaacacctcactgcaatacttcagaaaggtttgaataacttgctggatgagaaccgt
attcaggatctgtctctgctgtatcagctcttcagtcgcgtgagaggtggtgtgcaggtt
cttctgcagcattggatcgagtacatcaaggcctttggaagcacaattgtgatcaaccct
gagaaagacaagacgatggttcaggagcttctggatttcaaggataaagtcgaccacata
attgatgtatgtttcatgaagaatgaaaagtttgtaaatggcatgaaggaagccttcgag
acgtttatcaacaaacggccaaacaaacctgcagagctcatagcaaaatatgtggattca
aagctccgtgctgggaacaaagaggcaactgatgaggagctggagaaaatgttggacaag
ataatgatcatattcaggttcatttacggcaaagatgtttttgaagccttctacaagaaa
gacttagcgaagaggttactggtgggaaagagtgcctctgtagatgcagagaaatcaatg
ctgtcaaaactgaagcatgaatgtggagcagcatttactagtaaactggagggaatgttc
aaagacatggagctgtcgaaagatattatggtgcagttcaaacagcatatgcagtgccaa
aatattcctggtaacattgagctgacagtgaacatcctcactatgggctattggccaaca
tacgtccctatggaagtacatctgccagcagagatggtgagattgcaagagatcttcaaa
acgttttacctgggtaaacacagtggacggaaactacagtggcaatcaacgttagggcat
tgtgttttaaaggcagaatttaaagaggggaaaaaggagctgcaggtgtctctgtttcag
actttagttctgcttatgtttaatgaaggggaggaattctctctggaggacattaagctg
gccacaggcattgaggacagtgagctgaggcggacactgcagtctctggcctgcgggaaa
gcaagagtcctcaccaaaatcccaaagagtaaagatgtggaggatggagacaagttctca
tgcaacgatgatttcaaacacaaactcttcagaattaaaatcaaccagatccagatgaaa
gaaacggtggaggagcaagccagcactacagagagagtattccaggatcgtcagtaccaa
atcgatgctgccattgttcgaatcatgaagatgaggaaaactctcagccataatcttctg
gtgtctgaggtgtacaaccaacttaagttcccagtcaagcctgctgatctgaagaagagg
atagagtcacttattgacagggactacatggaaagggataaagagaatcccaatcaatac
aactatgtggcttag

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