Danio rerio (zebrafish): 560477
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Entry
560477 CDS
T01004
Symbol
ercc6
Name
(RefSeq) DNA excision repair protein ERCC-6
KO
K10841
DNA excision repair protein ERCC-6
Organism
dre
Danio rerio (zebrafish)
Pathway
dre03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
dre00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
560477 (ercc6)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
dre03036
]
560477 (ercc6)
03400 DNA repair and recombination proteins [BR:
dre03400
]
560477 (ercc6)
Chromosome and associated proteins [BR:
dre03036
]
Eukaryotic type
Chromatin remodeling factors
B-WICH complex
560477 (ercc6)
DNA repair and recombination proteins [BR:
dre03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
Other TCR factor
560477 (ercc6)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
Helicase_C
SesA
CNOT11
Motif
Other DBs
NCBI-GeneID:
560477
NCBI-ProteinID:
XP_017214320
ZFIN:
ZDB-GENE-070228-1
Ensembl:
ENSDARG00000075612
UniProt:
A0A8M6Z974
LinkDB
All DBs
Position
13:30874170..30909732
Genome browser
AA seq
1390 aa
AA seq
DB search
MPVEGTEDQALSPLSSPVSALTPGAPEDNGLSIPGSSREEPAAACPETVGAQNSRKSQPL
LQINRQEILSVDHSSQAAELQGLGVDVYDQDVLEQGVLQQVDRAIQEANQAAAKAEAQKE
YESVLDDVRSCTSALKHINKILEQLTPHAASSKDISRKIESVKRQKENKEKQLKKIRAKQ
KRLQALLDGEDIQKLEAELLIEDDEEPGPSTLGSMLMPAQESEWEELIRTGHMTPFGSRI
PQKQEKKEPRKVMLTENSGFDKYLADQALLADSRKRPIMKKKTTKKHSGETTPNKEKKNG
SLSSKDKKLQKRMLKLQRTALRAHPKARPKVEKELPRVKKRKSDWEHASDSEGSEYVPSD
ELMDPEEPERDDDDELWVDDHEEYQLKPYKKKKEPKTRKPKKEDESDDYIPSSSEEEDSQ
KGGKVKKCKDDGDIECYRQRIRKWKRQRLREKEAKREAGEEESDESDAEFDEGFKIPGFL
WKKLFKYQQTGVRWMWELHCQQAGGILGDEMGLGKTIQIIAFLAGLSYSKLKTRGSNYRY
AGLGPTVIVCPATVMHQWVKEFHTWWPPFRVAVLHDTGSFTSKKEKLIPEIVASHGILIT
SYSYIRIMQDYIQRYDWHYVILDEGHKIRNPNAGVTTACKQFRTPHRFILSGSPMQNNLK
ELWSLFDFVFPGKLGTLPVFMEQFSVPITMGGYANASPVQVQTAYKCACVLRDTINPYLL
RRMKADVKANLSLPDKNEQVLFCRLTEDQRQVYQTFLDSKEVYQILNGDMQVFSGLIALR
KICNHPDLFTGGPRLLRGIPHDQLTEEEHFGYWKRSGKMIVVESLLRLWHKQGHRVLLFT
QSRQMLEILEVFVKENGFSYLKMDGTTTIASRQPLIAQFNQNKDIFVFILTTRVGGLGVN
LTGANRVVIYDPDWNPSTDTQARERAWRIGQKQQVTVYRLLTAGTIEEKIYHRQIFKQFL
TNRVLKDPKQRRFFKSNDIYELFTLSSPDGSQGTETSAIFAGTGSDVQVPKRHKTSSPSQ
GTTRPSLSHSTDSGNRNTTSVNGLPNNNTSESPNNKLESRSNANGLTSSTSKALSSMNSP
QKHREKKKHCETPEKDTIPSDGHKRKHKKRKHSEDARFEGARISHLVKKRRYKKEEDEEK
EDERKNEKRSDDYVLAKLFKKSGIHSVMKHDTIMEASNPDYVLVEAEANRVAKDALRALK
VSRQRCRLPYSRGSTTATPAPVKKRFGQKKNSLLSQSSGTMTKSAEKCKDAEIVKKSVVK
KPGSAAHFSGEGAEDESGSLSSSSLLARMRARNHLKKPQSQEDEEEESTQSVAVNAAPTE
HDELLVDLRNFVAFQAQVDGQASTKEILEYFTPRLTSTQMPVFRELLNNICEFHRLPGKE
GMWKLKADYR
NT seq
4173 nt
NT seq
+upstream
nt +downstream
nt
atgccagtagaaggtaccgaggaccaggccctgtcacccctgtccagccctgtgagtgct
cttactcctggagctccagaagacaatggcctttccatccctggaagtagtagggaagag
ccagcggctgcctgtccggagactgtcggggcacagaattcgagaaaatcacaacctctg
ctccagatcaaccgtcaggagatcctatcggtggaccacagctctcaggccgctgagctc
caaggtctgggtgtggatgtttacgaccaagatgtcctggagcagggtgtgttgcagcag
gtggacagagccattcaggaagccaaccaggctgcggctaaagctgaggcccagaaagaa
tacgagtctgtactggatgacgtcaggtcatgtacaagtgctttgaaacacatcaacaaa
atattggagcagttaacccctcatgctgcctctagcaaggatatcagtcggaaaattgag
tctgttaaacggcaaaaagagaataaggagaagcagttaaaaaagatcagagccaagcag
aagagattgcaagctcttcttgacggagaggatatacagaagcttgaggcagaattattg
attgaggatgacgaggaaccaggcccatccaccctgggcagcatgcttatgccagctcag
gagtcagaatgggaagagctcatccgcacaggtcacatgacccccttcggttcacggatc
ccccagaagcaagagaagaaagagcctcgaaaggttatgctcactgaaaattctggattc
gataagtacctcgccgaccaagccttgttagcggatagcaggaagagacccatcatgaag
aagaagaccaccaagaagcactcaggagagacaactcctaacaaagagaaaaagaatggc
tccctctcctccaaagataaaaaactccaaaagcgaatgcttaagcttcagaggactgct
ttaagggctcaccccaaagccagacccaaggtggagaaggagctgccccgagtcaaaaag
agaaagagcgactgggaacatgcgtcagacagtgaaggttcagagtacgtccctagtgat
gagctgatggatcctgaggaaccagagagagatgatgatgatgagttgtgggtggatgat
catgaggaataccaacttaaaccatacaagaagaagaaggagcccaaaactaggaaaccc
aagaaggaggatgagagtgacgactacatcccgagcagctcagaggaggaagattctcag
aaaggcggaaaagtcaagaaatgtaaagatgatggtgatatcgagtgctacaggcaaagg
attaggaagtggaaaaggcaaagacttcgagaaaaagaggcaaagagagaagcaggcgag
gaggaatccgacgagagcgatgcagagtttgatgaaggatttaaaatacctggtttcctc
tggaagaagctcttcaagtatcaacagacaggtgtcaggtggatgtgggaactgcactgc
cagcaagcaggaggcattctgggagacgagatgggcctgggcaagaccatccagataatt
gctttcctggcaggcctgagctacagcaagctgaaaacacgtggctccaattacaggtat
gctggactggggcctacggttattgtgtgtccagctacagtcatgcatcaatgggtgaag
gagttccacacatggtggcctccgttccgtgttgctgtcctccatgacactggctctttt
accagcaaaaaggagaagctcattccagaaattgtggccagtcacggcatcctcatcacc
tcctactcatacatacgcattatgcaagattacatccagagatacgactggcattatgtc
atcctggatgagggccacaagataaggaacccaaatgctggggtcactacagcatgcaag
cagttccggacaccccaccgttttatcctctctggttcacccatgcagaacaacctgaaa
gagctgtggtcgctttttgactttgtgtttccagggaagctggggactctgcctgtcttc
atggagcagttttctgtgcccatcaccatgggaggatacgctaatgcatctccagtgcag
gtccagacagcatataaatgtgcttgtgttcttcgcgacacgattaacccttatctgctg
agaaggatgaaggctgatgtgaaagcaaatctttctttacctgacaaaaatgaacaggtc
ctgttctgcagattaacagaagatcagcggcaagtttaccagacttttctcgactccaaa
gaggtttatcagattctgaatggagatatgcaggtcttctcaggcctcatagctctgagg
aagatctgcaaccacccggatctgttcactggcgggccgcgtttgctgcgaggaatccct
cacgatcagctgaccgaggaggagcacttcggttactggaaacgctctggaaagatgatt
gtggtggagtcactgctgcgcctgtggcacaaacagggtcaccgagtcttgcttttcacc
caatccagacagatgctggagatcttggaggtgttcgtgaaagagaatggcttctcctat
ctcaaaatggacggcactaccactattgcctccaggcagcctctcatcgctcagtttaac
cagaacaaagacatcttcgtcttcattttgacaacaagagttggaggtttgggggtgaat
ctgactggagcaaatagggttgtgatctatgatcccgactggaatcccagtacagacaca
caggctcgtgagcgtgcctggaggattgggcagaagcagcaggtgacggtttacaggctt
ctaacagctggaaccattgaggagaaaatttaccacagacaaatcttcaaacagtttctc
accaaccgcgtgctaaaggatcctaagcagaggcgctttttcaagtctaatgacatttat
gaacttttcacactgagcagtcctgacggctcccagggaacagaaaccagtgcaatattt
gcaggcacagggtcagatgtgcaagttccaaaacgacataaaacctcgagtccttctcag
ggaaccacaagaccatcactgtctcattccacagattcaggaaacagaaacactacctca
gtcaatggtctcccaaacaacaacacttctgagtcaccaaacaataaacttgaatctcgt
tccaatgcaaatggccttacgagcagcactagtaaagctctatcttcaatgaacagccct
caaaaacacagagaaaagaagaagcactgtgaaacaccagaaaaggacacgataccttcg
gacggacacaagcgcaagcataaaaagcgcaagcattccgaggatgccaggtttgagggc
gctcggatttctcaccttgtgaagaaacggaggtacaagaaagaggaagatgaggaaaaa
gaggatgagaggaaaaatgagaaaaggagtgacgattatgtgctagccaagctctttaaa
aaatccggcatacacagcgtcatgaagcacgacaccatcatggaggcatcgaacccggac
tatgtgctggtggaagcagaggctaatagagttgccaaggatgccctgagagctctgaag
gtctccagacaaagatgcagactgccttactcacgagggtctacaacagcaacaccagct
ccagtcaaaaaaaggtttggccagaagaaaaactcccttctttctcaatcctctgggaca
atgacaaaatcagcagagaaatgcaaggatgcagagattgtaaagaagtccgtggtaaag
aagccaggatctgctgctcacttcagcggtgaaggagcggaggatgaatctggatctctc
tcctcatcttctctcctcgctcgaatgagggctagaaaccacctcaaaaaaccccagagt
caagaggatgaagaagaggaaagtacgcagtctgttgccgtgaatgcagctcctacagaa
cacgacgagcttctggtggacctgaggaactttgtggccttccaggctcaggtggacggc
caggccagcacaaaggagatcctggagtatttcactcccaggctcacttccacacagatg
ccagtgttcagagaactgctgaataatatctgtgagttccataggcttcctgggaaggaa
gggatgtggaagcttaaagctgactacaggtaa
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integrated database retrieval system
