Danio rerio (zebrafish): 560526
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Entry
560526 CDS
T01004
Symbol
shprh
Name
(RefSeq) E3 ubiquitin-protein ligase SHPRH isoform X1
KO
K15710
E3 ubiquitin-protein ligase SHPRH [EC:5.6.2.-
2.3.2.27
]
Organism
dre
Danio rerio (zebrafish)
Brite
KEGG Orthology (KO) [BR:
dre00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
dre04121
]
560526 (shprh)
Enzymes [BR:
dre01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
560526 (shprh)
Ubiquitin system [BR:
dre04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
560526 (shprh)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
SNF2-rel_dom
SHPRH_helical-2nd
SHPRH_helical-1st
Linker_histone
Helicase_C
zf-RING_UBOX
zf-C3HC4
PHD
zf-RING_2
zf-C3HC4_2
zf-RING_5
LMBR1
VPS18_RING_C
Motif
Other DBs
NCBI-GeneID:
560526
NCBI-ProteinID:
XP_003200358
ZFIN:
ZDB-GENE-110512-2
Ensembl:
ENSDARG00000075884
UniProt:
X1WD98
LinkDB
All DBs
Position
17:8677260..8733197
Genome browser
AA seq
1644 aa
AA seq
DB search
MSSRRKRAPPVRVDEDAKRRLDWNMHEDRKNEGACEDILESVPAPSDSCLPVPVLEQGFI
SSAGTEEEPSEERPSCSTQDSPPDTIELNVMPISVLDQGWNALIGEFNLHPKIPIEVADG
SFCLQQTGDTLSMTLNTLEMEDGRGRSDPLCSVPVACSLGGLLLEDLDWLQKRKVIKLCH
ASGGVPVKLKVFLIESGLGRPEFLSEGNGRIKKASQLLQKLMELFYDFIIPEVMENEEEA
CDTDLERQNVEELYDHVRHLHQTEAAEQSFHVQHPALIPILRPYQSQAVNWMLRREKYKS
SSSPEQRLHFLWREMVTICGKKLFYNPYTGCLIREFPLAGVDWPGGILADEMGLGKTVEV
LALILCNTRQNLEHGVLTLPVGRSVNYFVPPPPLERQRIIKHEPRPKEKIIYPAVREMLL
TAIKEMKVGKGASINAIFAYLRTMYKYDTLKNRNHIKKILTKLISENIVEQIKGRGLAGS
FKLGKNYKEKKKKPVTARTKSADQPAPRRTSRRVSAPDKDSSLTSYTTTASDSASEDSMN
PPLLTEELKSDPDSLLDPENPLQKKPVDITDDKEIPDKPQLQITEDVHIESNKPDLMQTS
KPEVETPTRASVVPFNTPDYRFECICGELGLVDYKPRVQCLNCLLWQHAECVNYKEENLE
TTPFYCPHCLVAMTPVSTGATLIISPSSICHQWVDEINRHIHTSSLRVLVYQGVKRHGFI
QPHILAEQDVVITTYDVLRTELNYVDIPHSNSKDGRRFRNQKRYMAIPSPLVAVEWWRVC
LDEAQMVECTTAKAAEMALRLTSVNRWCVSGTPVQRGLEDLYGLVLFLGVDPYWVKYWWD
QLLYRPYRHGNTAPLYNVIGQLLWRSAKKDVIDQIQIPPQTEEIHWLNFSPVERHFYHRQ
HEVCSQDALVKLRKISDWSLKLGSLDRRTVTTILYPLLRLRQACCHPQAVRGEFLPLQKS
TMTMEELLKSLQKKCRVECEEAHRQLVCALNGLAGIHIIRSEFVDAAEMYREVLRSSEEH
KARLKTDSLQRLHATHNLMELLSANHPGIPPTLRDDSLKEEAEQLKQHYMAKVNSEVSEA
HQNLQPVLQHIKEQRRKVNLRSPWWLDVIQQAMQYSMDDDLVSRIQNELTCSYKQQANKL
SMADKFRDARGLQFLLSTQMDDLMKSQKTVQDAVKKLEGPPSQQVIEEATLCHLRPVRLP
LNNCVFCKADELFTDYESKLFSHTVKGQTAIFEEMIEDEEGLVDDRLPTTSRGLWAASET
ERALKAILSFAKVRRLESGLIEEGNSFMELFESWKKEYKLLHEYWMSLRDHVSAIDELGM
ATERLRVRLPDEPKPKVLHIIEPHEVEQNRIKLLNDRAVAKSQLQKKLGQFLYLTNLEKS
QDKSTGGLNPEPCPICARPLGQEWAVLTCGHCFCNECIAIIVEQYSIGNRRRAIKCAICR
QTTSHAEISYVFTTQNNHQGQDIPVKGSHSTKVEAVVRVLKKVQMTDPGAKSLVFSTWQG
VLDIIAKALFDNNMEFAQINGIHKFQENLSAFKYEEKINILLLPLHTGSNGLNIIEATHV
LLVEPILNPAHELQAIGRVHRIGQTKPTFVHRFLIKSTIEERMQAMLKTAEKSHSSTSMK
HSEASVFTVADLADLFTEDSETLE
NT seq
4935 nt
NT seq
+upstream
nt +downstream
nt
atgagcagcaggaggaaacgtgcgccgccagtgcgcgtggatgaggacgccaagaggaga
ctggactggaatatgcatgaagaccgcaagaatgaaggagcttgtgaagacattctggag
tccgtcccagcaccgtctgacagctgtctgcctgtaccagtgcttgagcaaggttttata
tcttctgcaggcacagaagaagaaccatcagaagagcgtccaagctgctccacacaggat
tctcctccagacaccattgaactgaatgtaatgccaatttctgttctggatcaagggtgg
aacgcactgatcggagagtttaacttgcatccaaagattcctattgaggttgcagatggt
tcattctgcctgcagcaaacaggagacacactgagcatgactctgaacactcttgagatg
gaggatgggaggggtagaagtgatccgctctgttcggtgcctgtcgcatgttcacttggt
ggactgttgttggaggatctggattggctgcagaagaggaaggtcattaaattgtgtcat
gcatcaggaggtgtgccggtgaagctgaaagtttttcttattgaatcaggattgggcaga
ccggaattcctcagtgaaggaaacggacggattaaaaaagccagtcagcttctgcagaaa
ttaatggaattgttttacgacttcatcatccctgaggtgatggagaatgaagaggaggcg
tgtgacactgatctggagcgtcagaacgtggaggagctgtacgatcacgtcagacacctc
caccagaccgaagcagccgagcagagcttccacgtccagcacccggctctcatccccatc
ctgagaccctaccagagtcaggccgtcaactggatgctaaggagggagaaatacaaaagc
agcagctctccagagcaaaggttgcattttctttggagggaaatggtcacgatttgcggg
aaaaaactcttttacaatccctacactggatgcctgattcgagagtttcctctggctgga
gtggactggcccggcgggatccttgctgatgagatgggacttgggaaaactgtggaagta
ctggctctgattctgtgtaacactcggcaaaacctggagcacggggtcctcactttacct
gtgggtcggtctgtgaattactttgttcctcctccaccattagagagacaaagaatcata
aagcatgagccgagacccaaagagaagatcatatatccagctgttcgtgagatgctgtta
actgctattaaggaaatgaaggttggaaaaggagcatcgattaatgcaatttttgcttat
ctgcggaccatgtacaagtacgacaccctgaagaaccgcaaccacatcaagaaaatcctg
accaagctcattagcgagaacattgtggagcagatcaaaggacgaggcttagcgggatcc
ttcaaactggggaagaactacaaagagaagaagaagaagcctgtcactgcacgaactaag
tctgctgaccagcccgctcccaggagaacatctcgtcgagtttctgctccggataaagat
tcctcactgacctcctatacaacaacagcatcagattcagcatcggaagacagtatgaat
cctcctcttctcacagaagagctgaaatctgatcctgattcacttctggacccagaaaat
cccctgcagaaaaaacctgtagacataacagatgataaagaaatacccgacaaaccccaa
ctgcaaataacagaagacgtccatattgaatctaacaaaccagatcttatgcaaacctca
aaacctgaagtcgaaacgccaaccagagcgtctgtggtcccgtttaatactccagactac
cgctttgagtgcatctgtggagagctgggcctggtggactataagccccgggttcagtgt
ctgaactgtctgttatggcagcatgccgagtgtgtcaactataaggaggagaatctggaa
acgacgccattttattgtcctcactgtctggtggccatgacaccagtgtccactggagcg
actcttatcatctcacccagctcaatttgtcatcagtgggtggatgaaatcaaccggcac
attcacacctcctccctcagagtgctggtgtatcagggcgtgaagagacacggttttatc
cagcctcacattctggccgagcaggatgtggtcatcaccacttatgacgttctgcgcact
gaactcaattatgtggatattcctcacagcaatagtaaagatggccgtcgattccgcaac
cagaagcgctacatggccataccgagccctctagtggctgtggagtggtggcgcgtttgt
ctagatgaagctcagatggtggagtgcaccacagccaaggctgcagaaatggctttgcgt
ctcacatctgttaatcgctggtgtgtgagtggaacacctgtgcagagaggtttggaggac
ctgtatggtctcgtcctgttcttgggagttgatccctactgggtgaagtactggtgggat
cagttactctatcgcccgtaccgtcacggcaatacagcaccgctctacaacgtcattggt
caactactatggcgatctgccaaaaaagacgtcattgatcagatccaaatcccccctcaa
acagaggagatccattggcttaacttctcccccgtggaaagacacttttaccaccgtcag
catgaggtttgctcccaggatgctttagtgaagctaaggaagatctcagattggtcactg
aagctaggaagtttggaccgtcgtaccgtcactaccatattatacccacttttgcgtctg
cgccaggcctgctgccacccgcaggccgtccgaggagaatttctaccccttcaaaaaagc
acaatgacaatggaggagttgttgaagtcgctgcagaagaaatgtcgtgtggagtgtgaa
gaagcgcacaggcagctggtctgtgctctcaacggtctggctggaatccacatcattaga
agtgagtttgtagatgcagcggagatgtacagggaagtgttgcgatcatctgaagaacac
aaagcaaggctgaaaactgattcccttcagaggcttcatgcaacccacaatctaatggaa
cttctaagtgcaaaccaccctgggattcctccaaccctgagagatgacagtctcaaagaa
gaggccgagcagctgaagcagcattacatggccaaagtgaactctgaggtttctgaagca
catcaaaacctacagcctgttcttcagcacattaaagaacaaagacgcaaggtaaacctt
cgctccccctggtggctggatgtcatacagcaggccatgcagtactccatggatgatgat
cttgtcagccgcattcaaaatgagcttacatgcagttataaacaacaagccaacaagctc
tcaatggcagacaaatttcgagacgctcggggtcttcagtttctgctcagcactcaaatg
gatgatttgatgaagtcacagaaaacagtccaggatgctgtgaagaagctggaagggccg
ccgtctcaacaagtcatcgaggaagcaacactttgccacctgcgacctgttcgtctgcca
ctgaacaactgtgtgttttgcaaagcagatgaactttttacagactacgagtcgaagctt
ttctcgcacacagtaaaagggcagacggctatctttgaggagatgattgaagacgaggaa
gggctggtagatgacaggcttcccaccaccagtagaggattatgggccgccagtgagacc
gaacgagctcttaaagccatcttgtccttcgctaaagtccgccgcttggagtctggcctc
atcgaggagggaaactccttcatggagctcttcgagtcctggaagaaagaatacaagctt
ctgcatgagtactggatgtctctgcgggatcatgtatctgctatagatgagctgggaatg
gccaccgagaggctgcgtgtgcgcttacctgatgagcccaaacccaaagtcctgcatatt
attgagcctcacgaggtggagcagaacaggataaagctgctcaatgacagggcagtggcc
aaatcacagctgcaaaaaaagcttgggcagtttctctatctcacaaacctggagaagtct
caggataagtccactggtggtctgaatccagaaccatgtccaatctgtgctcgtccgctg
ggtcaggagtgggccgtactgacctgtggacactgtttctgtaacgagtgcatcgccatc
attgtggagcaatacagcatcggcaatcgacggagagctataaagtgtgccatatgccga
caaaccacttcacacgcagagatctcatatgtgttcaccactcaaaacaaccaccagggg
caggacatccctgtgaagggtagccactccacgaaggtcgaggctgtggttcgagtccta
aaaaaagtccagatgaccgacccgggagccaagtctcttgtgttctccacgtggcagggc
gtcctggacatcatcgccaaagccctgtttgacaacaacatggagtttgcacagatcaac
ggaattcacaagtttcaggagaacctgagtgctttcaaatatgaggagaagatcaacatc
ttgttgctgccactgcacacaggctccaatggactgaacatcattgaagcaacacacgtg
ctactggtggagcccatcctaaaccccgcccacgagctgcaggccataggaagagtgcat
cggattggccagaccaaacccacatttgttcatcggtttctgattaagtccaccattgag
gaacggatgcaagccatgctgaaaacagcagaaaagagtcacagttccacgtctatgaag
cattcggaggcctctgtgtttacagtggcagacctggcggatctgttcaccgaggacagc
gagactcttgagtaa
DBGET
integrated database retrieval system
