KEGG   Danio rerio (zebrafish): 562031
Entry
562031            CDS       T01004                                 
Symbol
pcdh18b
Name
(RefSeq) protocadherin-18b precursor
  KO
K16499  protocadherin delta 2
Organism
dre  Danio rerio (zebrafish)
Brite
KEGG Orthology (KO) [BR:dre00001]
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   04515 Cell adhesion molecules [BR:dre04515]
    562031 (pcdh18b)
Cell adhesion molecules [BR:dre04515]
 Cadherins
  Protocadherins
   562031 (pcdh18b)
SSDB
Motif
Pfam: Cadherin Cadherin_2
Other DBs
NCBI-GeneID: 562031
NCBI-ProteinID: NP_001108571
ZFIN: ZDB-GENE-080804-1
Ensembl: ENSDARG00000052494
UniProt: A9CPE6
LinkDB
Position
14:46750868..46758792
AA seq 1150 aa
MGTTKHSSDWNVLFCKTLLKLMLLAAVAHNVSGKTLKYKVLEEQRVGTVIARLKEDVAGL
LAKLPSSVSPRFRAMQRGSTPLLSVREEDGEISIATKIDREKLCEKNLNCTIEFDVITIP
TEYLQLFHIQVEVLDINDNAPQFSRAIIPIEISESASVGTRFPLDSAVDPDVGENALHTY
SLTRNNFFKIDIRTRTDGAKYADLVVMRELDRETQSSYQLQLTASDSGVPPKSGSTLLKI
SISDSNDNSPAFDEQAYVVNLLENSSLETLLVDLNATDPDEGNNGKIVYSFSSHVPPKIL
ETFKINPDNGHITLIKKVDYETTSSYEIDVQAQDMGPNSIPGHCKIIIKVVDVNDNKPKI
NINLMTQGKEEVAYISEASPVDTFIALVRVDDSDSGINGEVVCRLHGHGHFRLQKTYENN
YMILTNVSLDREKRSEYSLTVIAEDRGTPSLSTIKHFTVQVQDENDNPPRFEKSRYEIFK
SENNSPGAYLTSVVATDPDLGPNGQVTYSIVESQVQGSSISTYVTIDPSNGAVYALRSFD
REEVGRLSFTVQARDGGSPAFLSSNTTVLLTILDENDNPPIIVAPLLSNHTAEVPLWRHA
ESGHLVTIIKATDRDAGANSELTCSIVGGNDEGLFVIDPRRCELRTNGSVEASGREGFDL
AILVQDRGASIRLSARAVLHISLRDYPESYSLNPSDINNQSPLDVSMIIIISLGAICGVL
LIVMVMFATRCSREQKDPRHSYNCRVAESTYQNHPKKPARQIHKGDITLVPTINGTLPVR
AHPRSPSASPAPESRQSHHSRQSLNSLVTISSNHVPENFALELAHATPPVEGQYQPRPSF
RGNKYTRSYRYALNEMDKFSLKDSGRGDSEAGDSDCEMGRESPLLGEGFSELFTPDGHHR
LHPTMKLCTEECRVLGHSDQCWMPPLPSPASSDYRSNLYIPGEDPQQKATPEVPQSGEST
LRKKSFSTFGKESEEGEGEADDGEDLCGTTSLLSEMNSVFQRLLPSSLDNYSETNETEKA
TACAAGVGSLERRKGHLPGKPSPATYQQNVAVWAANTHFQNPGHGHAPASHMTALVAPLP
APLPAPMPASASCSKWLPAMEEIPENHEEDELESVLGHLHGKRCDSRSEIMDASELVAEI
NKLLQDVRQS
NT seq 3453 nt   +upstreamnt  +downstreamnt
atgggaacaactaagcactccagcgactggaatgttttgttttgcaagacgcttctgaaa
cttatgcttctggcggccgtggcgcacaatgtttcggggaagactttaaaatacaaagtt
ctggaagagcaaagagttgggacggtaatcgccaggctgaaagaggatgtagccggtctg
ttagccaaactcccgagctccgtgtctccgcgcttcagagcgatgcagagaggcagcacc
cctctgctctccgtgcgcgaggaggacggagagatcagcatagccaccaaaatcgaccga
gaaaagctttgtgagaaaaacttaaactgcactatcgagttcgacgtgattactattccc
acagaatacctccaactgtttcacattcaagtggaagtgttggacatcaacgacaacgct
ccgcagttttcgcgcgccatcatccctatagagatatccgagagcgcgtctgtgggcaca
cgcttccctctggatagcgcggtagacccggatgtcggggaaaacgcgctgcacacctac
tcgctcactcggaataactttttcaaaatcgatatcaggacgcgaacggacggcgcaaag
tacgcggaccttgttgtaatgagagaacttgacagggaaacacagtccagttatcaacta
caactcacagcttcagactctggcgtaccgccgaaatctggctcaactctgcttaaaatc
agcatatctgattccaacgataatagcccggcgtttgacgagcaggcttacgtggtcaac
ctcctggaaaattcatcactggggacgctcttggtagacttgaacgctacagacccggat
gaaggcaataatggcaaaatcgtgtattctttcagcagccacgtgccccccaaaatccta
gagactttcaaaattaacccagataatggccacatcactcttattaagaaagttgactac
gaaaccacgtcttcatatgaaatagatgtgcaggctcaggatatgggtcccaactccatt
ccaggccactgtaaaataataatcaaagtggtcgacgtcaacgacaacaagccaaaaatc
aacatcaacctcatgactcagggcaaagaggaggtggcctacatctcagaggcctcccct
gttgataccttcatcgcattagtgcgagtggatgacagtgactcgggtataaacggtgag
gttgtgtgccgtcttcatggccatgggcattttcgcctgcagaagacctacgagaacaac
tacatgattctcacaaatgtgtctctggaccgtgagaaacgctctgaatatagcttgacg
gtgatcgccgaagaccgtggcacgccaagcctatccaccatcaaacacttcacagtgcag
gtgcaggatgaaaatgacaaccctccccgctttgaaaagagccgatatgaaatcttcaag
tctgagaacaattcccctggggcatacctgacgtcagtggtggccaccgacccagatttg
gggcctaatggacaggtgacctactcaattgtggaaagccaggtccagggcagctctatt
tcaacttatgttactattgacccatccaacggggctgtgtatgcactccgaagctttgat
cgggaagaagttggccggctttcgttcaccgtgcaggcacgagatggcggaagcccagcc
tttctgagcagcaacaccactgtgttgctcaccatcctagatgaaaatgacaaccctcct
attattgttgccccactgctaagtaaccacacagctgaggtaccattatggcggcacgcc
gagtctggtcatttggtgacaatcattaaggcgacagatcgtgatgcaggagccaacagc
gagctgacttgctccatagtcggaggcaatgacgagggactctttgtcattgacccacgc
agatgtgagttacgaaccaacggaagtgtggaggcctcaggacgtgagggatttgatcta
gccatcctggtgcaagacagaggtgcatccattcgactttcagcgagggccgtcctgcac
atcagcctacgggactatccagaaagctactccctgaacccttcagacataaacaaccaa
tccccactagacgtgtctatgatcatcatcatctctcttggtgccatctgtggtgtgctg
ctcattgttatggtaatgttcgcaaccaggtgctcaagagagcagaaggacccaaggcac
tcctacaactgcagagtggctgaatccacctaccaaaaccatcccaaaaaaccagcccgg
cagatccacaagggtgacatcactctggtgcccacaattaacgggaccctgcctgtgaga
gcccatcctaggtccccttcagcctcccctgctccagaaagccggcagagccaccacagc
cgccaatcactcaacagcctggtcaccatctcatccaatcatgttccagagaacttcgcc
ctagaacttgcccacgccacaccaccagtcgagggccagtaccaacccagacccagtttc
cgtggcaacaaatacaccaggagctacaggtatgctttgaatgagatggacaagttcagt
ctgaaggacagtgggcgaggggatagtgaggctggagacagtgattgtgagatgggcaga
gagtctcctctgcttggagaaggcttcagtgagctcttcactcctgatggacatcaccga
ctgcatcccacgatgaagctgtgcactgaagagtgtcgagtcctgggtcactccgaccag
tgctggatgcctccattgccatctccagcatcttctgattacagaagcaacctttatatc
cctggagaagaccctcagcagaaagccactcctgaagtgccccaatctggagagtctacg
ctgaggaaaaagagtttctccacattcggcaaggagagcgaggagggagaaggagaagca
gatgatggagaagatctatgtggaaccacatctttgctgtcagaaatgaacagcgttttt
cagaggctccttccctcctcgctggataattacagcgaaacgaatgaaactgaaaaggca
accgcctgtgctgcaggggtgggatcgctggaaagaaggaagggccatttaccaggtaaa
ccaagccctgctacttaccagcagaacgttgctgtttgggcagctaacacacactttcaa
aatcccggccatggccacgcccctgctagtcacatgacagccctggtggctccactcccc
gcccctttgcctgctccaatgccggcatcagcttcctgttcaaaatggctgccagcaatg
gaggaaatccctgaaaatcacgaggaggacgagctggagtctgtgctcggacacttacac
gggaagcgctgcgatagtcgcagcgaaattatggacgccagcgagcttgttgcagaaatc
aacaaactccttcaagatgtaaggcaaagctaa

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