Danio rerio (zebrafish): 562031
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Entry
562031 CDS
T01004
Symbol
pcdh18b
Name
(RefSeq) protocadherin-18b precursor
KO
K16499
protocadherin delta 2
Organism
dre
Danio rerio (zebrafish)
Brite
KEGG Orthology (KO) [BR:
dre00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
dre04515
]
562031 (pcdh18b)
Cell adhesion molecules [BR:
dre04515
]
Cadherins
Protocadherins
562031 (pcdh18b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cadherin
Cadherin_2
Motif
Other DBs
NCBI-GeneID:
562031
NCBI-ProteinID:
NP_001108571
ZFIN:
ZDB-GENE-080804-1
Ensembl:
ENSDARG00000052494
UniProt:
A9CPE6
LinkDB
All DBs
Position
14:46750868..46758792
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AA seq
1150 aa
AA seq
DB search
MGTTKHSSDWNVLFCKTLLKLMLLAAVAHNVSGKTLKYKVLEEQRVGTVIARLKEDVAGL
LAKLPSSVSPRFRAMQRGSTPLLSVREEDGEISIATKIDREKLCEKNLNCTIEFDVITIP
TEYLQLFHIQVEVLDINDNAPQFSRAIIPIEISESASVGTRFPLDSAVDPDVGENALHTY
SLTRNNFFKIDIRTRTDGAKYADLVVMRELDRETQSSYQLQLTASDSGVPPKSGSTLLKI
SISDSNDNSPAFDEQAYVVNLLENSSLETLLVDLNATDPDEGNNGKIVYSFSSHVPPKIL
ETFKINPDNGHITLIKKVDYETTSSYEIDVQAQDMGPNSIPGHCKIIIKVVDVNDNKPKI
NINLMTQGKEEVAYISEASPVDTFIALVRVDDSDSGINGEVVCRLHGHGHFRLQKTYENN
YMILTNVSLDREKRSEYSLTVIAEDRGTPSLSTIKHFTVQVQDENDNPPRFEKSRYEIFK
SENNSPGAYLTSVVATDPDLGPNGQVTYSIVESQVQGSSISTYVTIDPSNGAVYALRSFD
REEVGRLSFTVQARDGGSPAFLSSNTTVLLTILDENDNPPIIVAPLLSNHTAEVPLWRHA
ESGHLVTIIKATDRDAGANSELTCSIVGGNDEGLFVIDPRRCELRTNGSVEASGREGFDL
AILVQDRGASIRLSARAVLHISLRDYPESYSLNPSDINNQSPLDVSMIIIISLGAICGVL
LIVMVMFATRCSREQKDPRHSYNCRVAESTYQNHPKKPARQIHKGDITLVPTINGTLPVR
AHPRSPSASPAPESRQSHHSRQSLNSLVTISSNHVPENFALELAHATPPVEGQYQPRPSF
RGNKYTRSYRYALNEMDKFSLKDSGRGDSEAGDSDCEMGRESPLLGEGFSELFTPDGHHR
LHPTMKLCTEECRVLGHSDQCWMPPLPSPASSDYRSNLYIPGEDPQQKATPEVPQSGEST
LRKKSFSTFGKESEEGEGEADDGEDLCGTTSLLSEMNSVFQRLLPSSLDNYSETNETEKA
TACAAGVGSLERRKGHLPGKPSPATYQQNVAVWAANTHFQNPGHGHAPASHMTALVAPLP
APLPAPMPASASCSKWLPAMEEIPENHEEDELESVLGHLHGKRCDSRSEIMDASELVAEI
NKLLQDVRQS
NT seq
3453 nt
NT seq
+upstream
nt +downstream
nt
atgggaacaactaagcactccagcgactggaatgttttgttttgcaagacgcttctgaaa
cttatgcttctggcggccgtggcgcacaatgtttcggggaagactttaaaatacaaagtt
ctggaagagcaaagagttgggacggtaatcgccaggctgaaagaggatgtagccggtctg
ttagccaaactcccgagctccgtgtctccgcgcttcagagcgatgcagagaggcagcacc
cctctgctctccgtgcgcgaggaggacggagagatcagcatagccaccaaaatcgaccga
gaaaagctttgtgagaaaaacttaaactgcactatcgagttcgacgtgattactattccc
acagaatacctccaactgtttcacattcaagtggaagtgttggacatcaacgacaacgct
ccgcagttttcgcgcgccatcatccctatagagatatccgagagcgcgtctgtgggcaca
cgcttccctctggatagcgcggtagacccggatgtcggggaaaacgcgctgcacacctac
tcgctcactcggaataactttttcaaaatcgatatcaggacgcgaacggacggcgcaaag
tacgcggaccttgttgtaatgagagaacttgacagggaaacacagtccagttatcaacta
caactcacagcttcagactctggcgtaccgccgaaatctggctcaactctgcttaaaatc
agcatatctgattccaacgataatagcccggcgtttgacgagcaggcttacgtggtcaac
ctcctggaaaattcatcactggggacgctcttggtagacttgaacgctacagacccggat
gaaggcaataatggcaaaatcgtgtattctttcagcagccacgtgccccccaaaatccta
gagactttcaaaattaacccagataatggccacatcactcttattaagaaagttgactac
gaaaccacgtcttcatatgaaatagatgtgcaggctcaggatatgggtcccaactccatt
ccaggccactgtaaaataataatcaaagtggtcgacgtcaacgacaacaagccaaaaatc
aacatcaacctcatgactcagggcaaagaggaggtggcctacatctcagaggcctcccct
gttgataccttcatcgcattagtgcgagtggatgacagtgactcgggtataaacggtgag
gttgtgtgccgtcttcatggccatgggcattttcgcctgcagaagacctacgagaacaac
tacatgattctcacaaatgtgtctctggaccgtgagaaacgctctgaatatagcttgacg
gtgatcgccgaagaccgtggcacgccaagcctatccaccatcaaacacttcacagtgcag
gtgcaggatgaaaatgacaaccctccccgctttgaaaagagccgatatgaaatcttcaag
tctgagaacaattcccctggggcatacctgacgtcagtggtggccaccgacccagatttg
gggcctaatggacaggtgacctactcaattgtggaaagccaggtccagggcagctctatt
tcaacttatgttactattgacccatccaacggggctgtgtatgcactccgaagctttgat
cgggaagaagttggccggctttcgttcaccgtgcaggcacgagatggcggaagcccagcc
tttctgagcagcaacaccactgtgttgctcaccatcctagatgaaaatgacaaccctcct
attattgttgccccactgctaagtaaccacacagctgaggtaccattatggcggcacgcc
gagtctggtcatttggtgacaatcattaaggcgacagatcgtgatgcaggagccaacagc
gagctgacttgctccatagtcggaggcaatgacgagggactctttgtcattgacccacgc
agatgtgagttacgaaccaacggaagtgtggaggcctcaggacgtgagggatttgatcta
gccatcctggtgcaagacagaggtgcatccattcgactttcagcgagggccgtcctgcac
atcagcctacgggactatccagaaagctactccctgaacccttcagacataaacaaccaa
tccccactagacgtgtctatgatcatcatcatctctcttggtgccatctgtggtgtgctg
ctcattgttatggtaatgttcgcaaccaggtgctcaagagagcagaaggacccaaggcac
tcctacaactgcagagtggctgaatccacctaccaaaaccatcccaaaaaaccagcccgg
cagatccacaagggtgacatcactctggtgcccacaattaacgggaccctgcctgtgaga
gcccatcctaggtccccttcagcctcccctgctccagaaagccggcagagccaccacagc
cgccaatcactcaacagcctggtcaccatctcatccaatcatgttccagagaacttcgcc
ctagaacttgcccacgccacaccaccagtcgagggccagtaccaacccagacccagtttc
cgtggcaacaaatacaccaggagctacaggtatgctttgaatgagatggacaagttcagt
ctgaaggacagtgggcgaggggatagtgaggctggagacagtgattgtgagatgggcaga
gagtctcctctgcttggagaaggcttcagtgagctcttcactcctgatggacatcaccga
ctgcatcccacgatgaagctgtgcactgaagagtgtcgagtcctgggtcactccgaccag
tgctggatgcctccattgccatctccagcatcttctgattacagaagcaacctttatatc
cctggagaagaccctcagcagaaagccactcctgaagtgccccaatctggagagtctacg
ctgaggaaaaagagtttctccacattcggcaaggagagcgaggagggagaaggagaagca
gatgatggagaagatctatgtggaaccacatctttgctgtcagaaatgaacagcgttttt
cagaggctccttccctcctcgctggataattacagcgaaacgaatgaaactgaaaaggca
accgcctgtgctgcaggggtgggatcgctggaaagaaggaagggccatttaccaggtaaa
ccaagccctgctacttaccagcagaacgttgctgtttgggcagctaacacacactttcaa
aatcccggccatggccacgcccctgctagtcacatgacagccctggtggctccactcccc
gcccctttgcctgctccaatgccggcatcagcttcctgttcaaaatggctgccagcaatg
gaggaaatccctgaaaatcacgaggaggacgagctggagtctgtgctcggacacttacac
gggaagcgctgcgatagtcgcagcgaaattatggacgccagcgagcttgttgcagaaatc
aacaaactccttcaagatgtaaggcaaagctaa
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