Danio rerio (zebrafish): 562455
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Entry
562455 CDS
T01004
Symbol
arhgef12a
Name
(RefSeq) rho guanine nucleotide exchange factor 12 isoform X1
KO
K07532
Rho guanine nucleotide exchange factor 12
Organism
dre
Danio rerio (zebrafish)
Pathway
dre04270
Vascular smooth muscle contraction
dre04625
C-type lectin receptor signaling pathway
dre04810
Regulation of actin cytoskeleton
Brite
KEGG Orthology (KO) [BR:
dre00001
]
09140 Cellular Processes
09142 Cell motility
04810 Regulation of actin cytoskeleton
562455 (arhgef12a)
09150 Organismal Systems
09151 Immune system
04625 C-type lectin receptor signaling pathway
562455 (arhgef12a)
09153 Circulatory system
04270 Vascular smooth muscle contraction
562455 (arhgef12a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
dre04131
]
562455 (arhgef12a)
Membrane trafficking [BR:
dre04131
]
Others
Rho GTPase associated proteins
Rho guanine nucleotide exchange factors (GEFs)
562455 (arhgef12a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RGS-like
PH_16
RhoGEF
PDZ
PDZ_6
PH_13
PDZ_2
SOS1_NGEF_PH
Pept_S41_N_bact
PH
Motif
Other DBs
NCBI-GeneID:
562455
NCBI-ProteinID:
XP_009290006
ZFIN:
ZDB-GENE-121017-3
Ensembl:
ENSDARG00000030532
UniProt:
E7FDV8
LinkDB
All DBs
Position
15:22446322..22537374
Genome browser
AA seq
1357 aa
AA seq
DB search
MSDTRSTVSDRTSSFLSRDHPPDKRPKSDKLPGTPTHEFDPTDVLVQKSGCVVADRRPES
CGLVQRCVIIQKDENGFGLTVSGDNPVFVQLVKQDGAAMRAGVQTGDRIIKVNGTLVTQS
NHVEVVKLIKSGSYVALTVLGRPPGLPQIPLPEVDVGLESPDVFGDPFITSPNSYNAAER
TSSPLVSWEENSALHNQRMDSRRTGLKDQQDTQESPCLRNSEDGSWAEEDQYKRDFSPEA
FWSGNSVPSVHRRFYPASPESQRDSNCSSPKSTPRDSFNSCPSPEVDYGSDLDSRFPSTV
GSPRLVSEIIAAEDDDFDSEQEQVNGQCSCFQSIQLLKTRPAHLAAFLHHVISQFDPAPL
LCYLYADLYKQTNSKETRRIFTDFLTFFIDRGANLKVTVPESISSELERRRPELIPEELH
RQYIQTMQETLFPDVQRNLEDFRQKRSMGLTLADTELSRLDSEQLAVDRERACAESILSK
IDDVLLTSQPTEEEKCSTIQYVIFMYMKHLGVRAKEQRNLESKRVRINFLPSKLRKSKTE
KDGEEKLKKSRFPIRVPPRWPGRLDSVPSGRVGDSIKQRPQKQMSQPALGGSELIDAGRL
RGSQSSEGSDLLHSPGLITSSPFSAPYSSPSDPSGRDSEFNMSPSAVVPRLSDGLQSGDP
LDSIYPPCDYIPYNVDQLDEDRDGDRPPDVGTPKPSRRFEDLQSEDDQGSDVYSDVDPPN
WQQLVGRDVLAGLTPHEIKRQEVINELFYTERAHVRMLKVLDKVFYQKLNRDNILPPADI
KYIFTNLEEIIQLHVRIVDQMTAICKKNETSVIDHIGDELLSWFSSGEEEKIKQAVGTFC
SNQPFALELIKSRQKKDQRFSSFMQEAESNRLCRRLQLKDIIPAEMQRFTKYPLLMDNIA
KYTDESEEKDKVRRAAECCRQILNHVNQSVKESENKQRLEDYQRRLDLSSLKQSENPMIS
EFKNLDLTKRKMVHEGPLSWKINKDKTIELYTLLLEDILVLLQKQDERLILRCHSKNLAG
TAETKHIFSPIIKLSTVLVRSVATDNRSFFVISMSKNGAQIYELMAQTVSEQRMWQRQIT
QRAEVMNTKPHSVIPLPQHDGDRDGVELSKFSKGSDRISTGSIQSAEKDGEFSPSAALRD
CVPDTNPGEEDQVARAGRDASYQDSELLNGRETDSLSCSSKADEALKTLAALKQVLLTQL
MAQDEGERLGRSAGSRLLRTTSLRTPVEHNSNRTPSRAQDYTSGDTGFYECPEDYAAYLV
LEGFGGSGESSTDDDFQVGRKEPGLAHSCAADSGISLKFSSPSSGSTSRLSRQVLSHLRC
LQANLNHLKEMETKYYNLLRQRPVGSAAEADESREKK
NT seq
4074 nt
NT seq
+upstream
nt +downstream
nt
atgagcgacacacggtctacagtcagtgacagaaccagtagctttctcagcagagaccac
cctcccgacaagaggcccaaaagtgataagctgcccggtaccccaacacacgagtttgac
ccaacagacgtgctggtgcagaagagtggatgtgtagtggctgacaggagacctgagtct
tgtgggctagtgcagagatgcgtgatcattcagaaagatgagaacggctttgggctgacc
gtcagtggggacaaccctgttttcgtgcagctcgtcaaacaggatggcgctgccatgcga
gcaggtgttcagacgggggacaggatcattaaggtgaacgggaccttggtaacgcaatca
aaccatgttgaggtggtgaagttaatcaaatccggctcttatgtagctctcacagtatta
ggccgaccgcccgggttgccccagatccccctccctgaggtggacgtgggtctcgagtca
ccggatgttttcggggacccttttattacatctcccaactcttacaatgcagcagaacgc
acctcctctcctcttgtatcatgggaagagaacagtgctctacacaaccaaagaatggac
agcagaaggactggtttaaaggatcaacaggacacgcaggagagtccgtgtctcaggaac
agtgaagatggctcatgggcggaagaggatcaatataagagagatttcagcccagaggct
ttttggagcggaaattcagtgccatctgtccaccggcgcttctacccagcttctccagag
agtcagcgggactctaactgttccagtccgaaaagtacccccagagacagcttcaactcc
tgcccttctcctgaagttgactacggctctgacctggattctcgattcccatccaccgta
gggagcccacgtttggtttctgagatcattgctgctgaagatgatgactttgactctgag
caggagcaggttaatggccagtgcagctgcttccagagcatccagctgctcaagactcga
cctgctcatcttgctgcttttctgcatcatgtgatctctcagtttgaccctgcacctctg
ctctgctatctgtatgctgacctctacaaacagaccaactccaaagaaactcggcgcatc
ttcacggacttcttgacgttcttcatagaccggggggcaaatttgaaagtcactgtgcct
gaatccatctcgtctgaactcgagcggaggagaccagaattgattcctgaggaattacac
aggcagtacatacagacaatgcaggaaactctctttcctgatgtacagaggaacctggaa
gacttcaggcagaagcgtagtatgggcttgaccctggcggatacagagctgtctcgtctg
gactctgaacagctggctgtagacagagagagagcctgtgctgaaagcatcctctcaaag
atagatgacgttctgttgacttcacaacccacagaagaggagaaatgctccactatacag
tatgtgatcttcatgtacatgaagcatctgggagttcgggcgaaagaacaacgaaacctg
gaatccaaacgagttcgaattaatttccttccttccaaactaaggaaaagcaaaacagaa
aaggatggggaggagaaactaaaaaagtctcgcttccccatccgggtgcccccgcggtgg
cccggtcgcctcgattcagtaccatctggtagggtcggggacagcatcaagcaaagacct
cagaagcagatgtctcagccggcactgggcggctcagagctgatcgatgccggacgtctg
aggggcagtcagtcaagtgagggctcagacctgctccacagcccaggactgatcacctct
tccccctttagtgccccctacagctcaccgtcagacccctctggcagggactctgagttc
aatatgagcccgtctgcggtggttcctcggctcagtgatgggctgcagtctggagatcca
ctggacagcatttacccaccctgtgactacatcccatacaacgtggaccagctggatgaa
gacagagatggagacagacctcctgatgtgggcacacctaaaccgagcagaaggtttgag
gatctgcagagtgaggatgatcaggggagtgatgtttactctgatgtagatcctccaaac
tggcagcagctggtcgggcgtgatgttttagcaggcctgacgccccacgagatcaagaga
caagaagtcattaatgagctgttctacacggagcgagctcacgtacgcatgttgaaggtc
ctagacaaggtcttctaccagaaactcaaccgagacaacatactgccccctgctgacatc
aagtacatattcaccaacctggaggaaatcatccaactccacgtgagaatagtggatcaa
atgacagcaatttgcaagaagaacgagacgtctgtaatcgaccacataggagacgagttg
ttgtcttggttcagcagtggagaggaggagaagatcaagcaagcagtgggcactttctgc
agtaaccagcccttcgccctggagctcatcaaatcccgacagaagaaggaccaacgtttc
tcctccttcatgcaggaggctgaaagcaatcgactgtgtcggcgtctacagctaaaggac
atcatccctgcagagatgcagaggttcaccaaatacccattattaatggacaacattgcc
aaatacacagatgagtcagaggaaaaagacaaagtgagacgagcagcagaatgctgtcga
cagattctcaaccacgtcaatcagtctgtgaaggagtccgagaataaacagagactggaa
gactaccagagacggctggacctctcttccctcaagcagagcgagaacccaatgatctca
gagttcaagaacctggatctcactaaacgaaagatggtccacgagggtcctctctcctgg
aagataaataaagacaaaacaattgagttgtatacgttactcctggaagacatactggtg
ctgctgcagaagcaggacgagcgtctcattctcaggtgtcacagtaagaacctggcagga
acagctgaaaccaaacacatcttcagccctatcatcaagctcagcactgtgctggtgcgc
tctgtggccacagataatagatcattctttgtgatctccatgtccaaaaacggagctcag
atttatgagctgatggcccagacggtgtctgagcagaggatgtggcaacggcagatcact
cagagggcagaggttatgaacaccaaacctcacagtgtcattcctttgcctcaacacgat
ggcgacagagacggtgtggagttaagcaagttcagcaaaggctctgatcggatctccaca
ggaagcatccagtccgcagagaaagacggtgaattttcgccctcagcagccctgcgggac
tgtgtgcccgataccaaccctggggaagaggaccaggtcgcgagagctggcagagacgct
tcctatcaggactctgaacttttgaacggcagggaaacagactctctatcttgttcatct
aaagctgacgaggccctgaaaacattggcagcgctaaagcaggtgctgctgactcagctg
atggctcaggatgagggtgagcgattgggccgatcggccggcagtcgtctgctcaggacc
acctctttacgcacaccagtggagcacaactccaaccgcacccctagtcgagctcaggac
tacacctctggcgacacaggcttctatgagtgcccggaggattacgcagcgtacctggtt
ctggagggcttcggtggctcgggcgagagcagcactgatgatgattttcaggttgggaga
aaggagcctggtttggcccacagctgcgctgctgactctgggatcagcctgaagttctcc
tcgccctcctctggcagcacgtcccgtctcagcagacaggtgctctcacacctgcgctgc
ctgcaggccaacctcaaccacctcaaggagatggaaactaagtattataatctacttcgc
caaaggcctgtcggatcagcagcagaagcagacgagagcagagagaagaaataa
DBGET
integrated database retrieval system
