Danio rerio (zebrafish): 562474
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Entry
562474 CDS
T01004
Symbol
setx
Name
(RefSeq) probable helicase senataxin isoform X1
KO
K10706
ATP-dependent RNA/DNA helicase, senataxin [EC:
5.6.2.5
5.6.2.3
]
Organism
dre
Danio rerio (zebrafish)
Brite
KEGG Orthology (KO) [BR:
dre00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
dre03021
]
562474 (setx)
Enzymes [BR:
dre01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
562474 (setx)
5.6.2.5 RNA 5'-3' helicase
562474 (setx)
Transcription machinery [BR:
dre03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
562474 (setx)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_11
AAA_12
SEN1_N
AAA_19
UvrD-helicase
AAA_30
Viral_helicase1
AAA_22
AAA_16
Helicase_RecD
FtsK_SpoIIIE
NPHP3_N
Motif
Other DBs
NCBI-GeneID:
562474
NCBI-ProteinID:
XP_068072062
ZFIN:
ZDB-GENE-070402-1
Ensembl:
ENSDARG00000022996
UniProt:
A0AB32TAN1
LinkDB
All DBs
Position
21:3928849..3974015
Genome browser
AA seq
2396 aa
AA seq
DB search
MEKCLWCTTSLDSEGDAAMVALLRSYCSGQQSEMQMDSLNEDLCCCLECVVEYHRARENV
PDLHKCLWEMEIARLLRVLGSVLDQELGDEDEIYIIEGDHEQPVLKFSPSDIHDRIFIPL
CEILRYPYLLCCRELSDMVVRVLYKLQDWQQTLSWSEKYQGTYLLLVHPDEKVRRWAIDL
AKTLKSVDRDAYYDLREIFACMFQIIELGISLDLPDLDPGCYASGKVPMLPSHLYDAKNK
KNYWLGICMLLTQLSAEAMDSLFVGQFNIPLCILNTMDALKREDNPASDPFWPALHCFMV
ILDRLGSKIWAQVDPNMAFQTITGAASYVCELRSIQQKTMGRMVKVEPEYDDNVVTCSQM
VYDCYASKKQGHAPGSSNSGVGSNYVIYDDMQSLVSVLNSEMGQSMRVYGCTFLWFIPFV
RSIMELQEHNASYISEIIHYLCDKIRDNRYMLTGQASVCDKVTELFARIFIQIVELHYTE
GQMGILSRCPPKWVEVIVMCVVLCDEPYGPPDRMGGIHSVSSTSYSLGIVGRPTSECGNG
AIIKGCLTLIRQLLKEGKRRSDPDAAMFLNLLNKQLRGDTNKRWSLTFSNSAKLQQCLRK
IVQLMAERPAVPPRSAPSVEAATNTVVSRNSVSICQQQEDPEAGPSRAAFIKEEPLWNYG
KKSFSNEEFSCGPEDVFKGKKEPSDPVLISELRPAVELTNIKPDLGKLQEIRSRLNDDQS
LSKIEAIARKKSDVSAKKRPGFGALKNEEEEEDDDDDDDDDEPLHITRTRLIKSAIHKLE
SSDSDVDSRATASSVISKQNTESTTIVISDDEDSDNDIRPNDPLRSSYKECTVKNKSPES
PVMPESPGRDYDDLSESQVFEFETQQYVASAWDNADLDGSVLTKNLKSDRILKPQLDETP
NEASPSWSSETELVPDEDIERACQQAEEKIRQQQPRKPADEMERDYKQVEEKIRPQQTRE
NSDVHEFSSKASSTTKSWDKFAKPKPLKTKVTKTTPSDKRDHLQVKKPVLIDALAQKIRR
HPWKRSSTSEDMEEPSSSTTPSSSAVSSTSSSSSSSSSTPSSSSITSPYFSASTSRGTPA
IVPPKKVRKIAEPESTAERLGLKKKERKAFDLSQRSLDCVARLRCHGQNVQVEPHQKRRR
ASRTSKTSPQKRMVKANKKLMGSQDIQFFRQSREKHQKPATEPITTSASKPVSRQDELHS
SRPTIPNNEDGDFLPCPQPDAHCQQDNEKGALGSSDSSGDGVGNKFLQASEAAEGNLEGE
KAAQASKEDVDDEWMFYTQMEPTDMEICSQMEEFEDENDELFLTQRDPVDMDIDTDSGSD
TPGQPDFTDKNVPPSNAANDHLFLKPGMSPMSQKKAKPSTTKIYTPSSRSASLVLEMEKG
AKPPPPANVAKAKIPRLASAMPPPAMPPPKMPPPKMFQPLPPPQLPKPPALKQVTLPQGS
VPKLVTSNKISSTSEPPSYKVYQRPEAPVNKPVNKPMPTMDQSPKFDLSVLTQAILKWEY
RMLDNYKAFGSPLDLCQLPLKEVPVNFSSYLEYFNTLYPLLLINAFEEMANEWLKEGRVK
LYLKVQGIEYSNRTASASFIAGLSQECDVKQIYPKEDDLVLLWLPDNTGAYAQDEPNFHD
LHPHFGYVSRSNVLNRTPGSRSTLNLTIQTRGNVSSVNSQPVLCEVVGSLISIFREFRAL
CLLRNGPMLRPLLAPHVSFFTHSLDGPSDLDAPEFNRDQARAIACGIAMIHRKQKTPKFL
LIHGPPGTGKSKTIGGLLYKLLSSATNSSATVGNLHSKSRRTRVLLCAPSNAAIDSLMKK
VILIFKEKCRNINAPQGNCGDINLVRLGNERTISKSLKPFSLDHQTKARAQRAQQTVESD
VHRRKEQLDQMIENLSHQCAKTQKNSTEFKNLLEQKKQFLKEREGLSRQIKECRGRRQES
QALVLQNAHVICCTLSTSGSIVLENAFRRLGHEPFSCVIIDEASQAKETETLIPMLYRCP
SVILVGDPNQLPPTVVSQKAKEFGFDQSLMARLCKSLHPSNSKLPPILLLSMQYRMHPDI
CEFPSKYIYNSALKNDWQGQCRQEQEIRTVSEFRLLRSLSGPCVCETAQKRCSLSWPFKP
YKVFDVMDGRETKERDSFINHKEVSLVGLLLKLLCKEQAVRVGVITPYNAQKHRILDAIK
TSGINKQLQVEVDTVDGFQGREMDCIIVSCVRASSEMGSIGFVGNRQRMNVTITRAKFSL
FILGHLRTLREQSDWGALIEDAGRRECIINTMQKNFESDVKKIVKQKPNPLSRSLSHPPI
DRPSAVIRPVMHSPVEAGPSSVPRPHHDTTQAAQPMPRLIPLECPKDPRMNDRPSDPRFS
ERRPIREETQDRSRRDIPASRHSSQRSNSYDGSHRSSGQSSRYSSKHRGSSPPRRR
NT seq
7191 nt
NT seq
+upstream
nt +downstream
nt
atggagaagtgtctgtggtgtaccacatctctggattcagagggtgatgcagcgatggtc
gccctgttgcgcagctactgctcaggacagcagtctgaaatgcagatggactctctgaat
gaagacctctgctgctgtcttgagtgtgtggtggagtatcatcgagccagagagaatgtc
cctgatctgcacaagtgtttgtgggaaatggagattgctcgactcctgcgtgtgttgggg
tccgttttggatcaggagctgggagatgaagatgaaatctatatcattgaaggcgatcat
gagcagccggtgttaaagttctctccttcagatatccatgaccgtatcttcatcccactg
tgtgaaattttgagatatccatacctgctgtgctgccgagagctgtctgatatggtggtt
agggtcttgtacaagttgcaggattggcagcaaactttgagttggtctgagaagtatcag
ggaacatatctgcttctcgttcatcccgatgaaaaggtgcgtcgctgggcaattgatcta
gcaaaaaccttaaagagtgtggaccgggatgcctattatgaccttcgggagatcttcgct
tgcatgtttcaaataatcgagcttggaatatctttagatttaccagatttggatcctggg
tgttatgcaagcggaaaagtgcccatgctgccctctcacctctatgatgcaaagaacaag
aagaactactggctaggcatctgtatgttactaacacagctcagcgctgaggcaatggac
tctctcttcgtgggacagtttaatatcccgctttgcatactcaatacaatggatgcattg
aaaagggaggataacccggcttctgaccctttctggccagccctccactgtttcatggtc
attttagaccgtcttggttctaagatttgggctcaggttgaccctaatatggctttccag
accatcaccggagcagccagctatgtgtgtgaattaagaagcatccagcaaaagacaatg
gggaggatggtaaaagtagagccagaatatgacgacaatgtcgtgacttgcagtcagatg
gtgtatgactgttatgcctcgaaaaaacaaggccatgcacctggctcatccaacagtggt
gttggcagcaactatgtgatttatgacgatatgcaatcactggtcagcgtgcttaattca
gagatgggccagagcatgcgtgtatatggatgcacttttctgtggttcatcccatttgtt
cgttccataatggaacttcaagagcacaatgcttcctatattagtgaaatcatccactat
ctttgtgataagatccgagataatcggtacatgctgactggacaagcaagcgtgtgtgat
aaagtgactgagctctttgctcgtatctttattcaaatcgttgagctacactataccgaa
ggacaaatgggaatactttctcgctgtccccccaagtgggttgaggtgattgtcatgtgc
gtcgtcttatgtgatgaaccttatggacccccagacaggatgggtgggattcacagtgtc
agttcaacatcttacagtcttggcattgtaggaagacctacatcagaatgtgggaatgga
gcaataattaaaggctgtttgacgcttattcggcagctgcttaaggaagggaaaagaaga
tctgacccagatgcggccatgtttttgaatttgcttaacaagcagctgcgtggtgatacc
aacaaaaggtggagtctaactttttcaaattctgcaaagcttcagcagtgtttgaggaaa
attgtgcagctgatggctgaaagacctgctgttccaccccgatccgcaccatctgttgag
gcagctacaaatactgttgtttccagaaattcagtatcaatctgccaacaacaagaggac
ccggaggcaggtcccagcagagctgcgtttatcaaagaggagcctctttggaattatgga
aaaaaatctttctccaatgaggaattctcatgtgggcctgaggatgtcttcaagggtaaa
aaggaaccttctgacccagtgttaatttcagagctgaggcctgctgttgagttgaccaat
ataaaaccagatctgggtaaactgcaggaaattcgatcaagattaaatgatgatcagagt
ttgtcaaagatcgaagcaattgcaaggaagaagtctgacgtgtcagctaaaaagagacca
ggttttggggctttaaaaaatgaggaggaggaggaggatgatgatgatgatgatgatgat
gatgaaccccttcatatcactcgaactcgtctgataaaatctgcaatccacaagcttgaa
tctagtgactctgacgttgactccagagcaactgcgtcttcggttatttccaagcagaac
acagagtccactaccatagttatctctgatgatgaagattctgataatgatataaggcca
aatgaccccttgaggtctagttacaaagaatgcacagtaaaaaacaaatctccagaaagt
cctgtaatgcctgagagtccggggcgtgattatgatgatctaagtgaatcacaagtgttt
gagtttgagactcagcaatatgtggcatctgcttgggataatgcagatttggatggatca
gtcttgacaaagaatctcaaatcagatcgaatactcaagccacagttggatgaaacgcct
aatgaagcatctccctcatggagttcagagactgagctggtaccagatgaggacattgag
agggcctgtcagcaggcagaagagaagatcagacaacagcagccgagaaagccagcagat
gagatggaaagagactataagcaggtggaagagaaaatcagaccacagcagacacgagag
aattcggatgtgcatgaattctcatccaaagcatcaagtactacaaaaagctgggataaa
tttgccaaaccaaaacctctaaagactaaagtaacaaaaaccactccatctgataagaga
gaccatttgcaggttaaaaagccagtgttaattgatgcccttgctcaaaaaatcagacgc
cacccttggaaacgtagctcaacatctgaggacatggaggaaccttcctcttcaactact
ccatcctcatctgctgtatcctccacctcctcctcctcctcatcatcatcatccactcca
tcctccagctccatcacttctccttatttttctgcatctacgtcacgtggcacccctgcc
attgttcctccaaagaaggtgcgtaaaattgctgagccagaatcaacggcagagcgttta
ggattgaaaaagaaggaaaggaaagcctttgatctttctcagcgttcacttgactgtgtc
gccagactcaggtgccatggccagaacgtgcaggtggagccacatcagaaaagaaggcga
gcgtctcgaaccagtaagacttctccgcagaaacgtatggtgaaagctaacaagaaacta
atgggatctcaagatattcagtttttcaggcaaagtcgtgagaagcatcagaagccagca
acagaacccattacaacatcagcttccaaaccagtcagtcggcaagatgaattgcactca
tcgagaccaacaattccaaacaatgaggatggtgacttcttgccctgtcctcaaccagat
gcccattgtcagcaggataatgaaaaaggtgcattagggagtagcgattctagtggggat
ggggtagggaataagttcctccaagctagtgaggctgctgaaggtaacttggaaggagag
aaagctgctcaagcatcaaaagaggatgttgatgatgaatggatgttctatacacagatg
gaacctacagacatggaaatctgttcacaaatggaggaatttgaggatgaaaacgacgaa
ctctttcttacccagagagatcctgttgacatggacatcgatacagatagtgggtcggat
acccctggtcaacctgacttcactgacaaaaatgtaccgccttctaatgcggcaaatgat
catttgttcttgaagcctggaatgtcacccatgtctcagaaaaaagccaaaccttccacc
actaaaatatacactcccagctcccgtagtgcctcacttgtccttgaaatggaaaaagga
gccaagcctccccctcctgcaaatgtcgctaaagcaaaaattcctcgattggcttcagca
atgccacccccagcaatgccaccaccaaaaatgccaccccccaaaatgttccagccttta
ccccctccacaattaccaaagccacctgccttaaaacaagtaactcttcctcagggcagt
gtccccaagttggtcaccagtaataaaataagctcaacctcagaacccccatcatacaag
gtataccaaagaccagaggctccagttaacaagccagttaacaaaccaatgcccacaatg
gatcaaagcccaaagtttgacctttcggtgttaacccaggcaatccttaaatgggaatac
agaatgcttgataattataaagcatttgggagtccacttgatctgtgccaactgccgctg
aaggaggtgccagtaaatttttcttcctacctggagtacttcaacaccttgtacccactg
ctgctaattaatgcattcgaagagatggctaatgaatggctcaaagagggaagggtcaag
ctgtacctaaaagtccaaggtattgaatacagcaatcgcactgctagtgctagcttcatt
gccggcctttctcaggaatgtgatgtgaaacaaatttacccaaaagaagatgaccttgta
ttgctttggctgccagacaacactggggcatacgcccaggatgaaccaaattttcatgat
ctacatcctcattttggctatgtatcccggtccaatgttttaaacagaactccaggttcc
aggtcaacattaaacctgacaattcagacacgcggtaatgtatcatcagtgaattcccaa
cctgtgctctgtgaagttgttggatcattgatcagcatatttcgggagtttcgtgcactg
tgtttgctgagaaacggaccaatgctacgtcctcttcttgcgccccatgtgtcttttttc
acacattctttggatggaccatcagacctagatgcaccagaattcaacagggaccaggca
agagcaatagcatgtgggatcgctatgatacaccgaaaacagaagactccaaaatttctc
cttattcatggtcctcctggcactgggaagagtaaaacaattggtggtctgttgtacaaa
cttctgtcttcggctactaatagttctgctactgtgggcaaccttcactccaaatctcga
cggacacgtgttcttctctgtgcaccttctaatgctgccattgacagtctgatgaagaaa
gtcatcttgatctttaaagagaaatgtcgaaacattaacgcacctcaaggtaattgtggt
gacataaacctggtaagactgggaaatgaaagaaccatctcaaagtcactaaaacctttc
agcctcgaccaccagactaaagcaagagctcagcgagcccagcaaactgtagaatctgat
gtacacaggcggaaggagcaactggaccagatgattgaaaatctctctcatcaatgtgca
aaaacccagaagaattctactgagttcaaaaatttattggagcagaagaagcagtttctg
aaagagagagaaggactgagtcggcagattaaagagtgtcgcggcagaagacaggagagt
caagctcttgtcctgcagaatgctcatgtgatctgctgcacgctcagcacaagtggaagt
attgtcctcgaaaatgccttccgacgtctcggacatgagccatttagctgcgtcatcatc
gatgaggctagtcaggctaaagaaacagagacgctgattcccatgctgtaccgatgtcct
tctgtaatacttgttggcgatcctaaccagcttccaccaaccgttgtctcccagaaagca
aaggagtttggcttcgaccagtctctgatggcacggttatgcaaaagtcttcacccctca
aactcaaaactccctccaattcttctactcagtatgcaataccgcatgcacccagacatc
tgcgaattcccttccaagtacatctacaacagcgcactcaaaaatgactggcagggccag
tgcagacaggagcaggagattaggactgtgtctgaattcagactcctcaggtcattgagc
ggaccgtgcgtgtgcgagactgctcagaagcgctgctccctcagctggcccttcaagccc
tacaaagtgtttgacgtgatggatggcagagagaccaaggagagagactcatttatcaac
cataaagaggtcagtctggtggggctgctattgaagctgctgtgtaaggagcaggcggtg
cgagtgggtgtcatcacaccatacaacgcccagaaacatcggatactggacgccatcaag
acttcaggcatcaacaagcagcttcaggtggaagtggacacagtcgatggctttcagggt
agagaaatggactgtattattgtgtcctgtgtgagagccagcagtgaaatgggttccatt
ggatttgttggaaatcgccagaggatgaatgtaacaatcaccagagccaagtttagtctc
ttcatactgggacatctacgcacactcagggaacaaagtgattggggagcgttgattgag
gacgcagggagacgtgaatgcataatcaacaccatgcagaaaaacttcgaaagtgacgtc
aagaagatcgtgaaacaaaaaccaaatccgttgagccgcagtctttctcatccccctatc
gacagaccaagcgctgtgatccgacccgttatgcattctcccgtggaggcaggaccttca
tccgtgccccgcccccatcatgacaccactcaggcggcacagccaatgccacggctcata
ccattggagtgtcctaaagacccgcggatgaatgacaggccttcagacccacggttttca
gaacggcggccaatcagagaagagacacaagacagaagtagacgggatattccagcgtca
cgccattcatcacagagatctaattcatatgatggaagtcatcgaagttctggacaatct
tctagatactcttcaaaacaccgtggttcttcaccaccaagaaggagatga
DBGET
integrated database retrieval system
