Danio rerio (zebrafish): 562496
Help
Entry
562496 CDS
T01004
Symbol
col2a1a
Name
(RefSeq) collagen, type II, alpha 1a precursor
KO
K19719
collagen type II alpha
Organism
dre
Danio rerio (zebrafish)
Pathway
dre04510
Focal adhesion
dre04512
ECM-receptor interaction
dre04518
Integrin signaling
Brite
KEGG Orthology (KO) [BR:
dre00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
562496 (col2a1a)
04518 Integrin signaling
562496 (col2a1a)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
562496 (col2a1a)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
dre00536
]
562496 (col2a1a)
Glycosaminoglycan binding proteins [BR:
dre00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
562496 (col2a1a)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
COLFI
VWC
VWC2L_2nd
Motif
Other DBs
NCBI-GeneID:
562496
NCBI-ProteinID:
NP_571367
ZFIN:
ZDB-GENE-980526-192
Ensembl:
ENSDARG00000069093
UniProt:
Q2LDA1
A0ACM8Q988
LinkDB
All DBs
Position
8:23069742..23093816
Genome browser
AA seq
1491 aa
AA seq
DB search
MFRLLDSRTLLLLVATHSVLLSLVRCQQEDDQEEFGGCVQDGQQYADRAVWKPEPCRVCV
CDSGTVLCDEVICEDLNDCANPIISPGECCPICPADTDDPIGSLGAKGQKGEPGDITDVV
GPRGPAGPMGPPGEQGTRGERGAKGEKGSPGPRGRDGEPGTPGNPGPPGPPGPNGPPGLG
GNFAAQMAGGFDEKAGGAQMGVMQGPMGPMGPRGPPGPSGAPGPQGFQGNPGETGEPGPA
GALGPRGPPGPPGKPGSDGEAGKPGKAGERGPPGPQGARGFPGTPGLPGIKGHRGHPGLD
GAKGEAGAAGAKGEAGSNGESGAPGPMGPRGLPGERGRPGATGAAGARGNDGLPGPAGPP
GPVGPAGAPGFPGSPGSKGEAGPTGARGPEGAQGPRGEAGTPGSPGPAGASGNPGTDGIP
GAKGSAGASGIAGAPGFPGPRGPPGPQGATGPLGPKGQSGDPGIPGFKGEAGPKGERGVL
GPQGPPGPSGEEGKRGPRGEPGSAGPLGPPGERGAPGNRGFPGQDGLAGAKGAPGDRGVP
GLSGPKGGTGDPGRPGEPGLPGARGLTGRPGDAGAQGKVGATGAPGEDGRPGPPGPLGAR
GQPGVMGFPGPKGANGEPGKPGEKGLVGRTGLRGLPGKDGETGPSGPPGPVGAVGERGEQ
GQPGPSGFQGLPGPTGAPGEPGKPGDQGVPGEGGAAGPTGPRGERGFPGERGGAGPQGLQ
GPRGLPGTPGTDGPKGAIGPAGAAGAQGPPGLQGMPGERGAVGISGAKGDRGDSGEKGPE
GAPGKDGSRGLTGPIGPPGPSGPNGAKGETGPIGSIGAPGARGAPGDRGEIGAPGPAGFA
GPPGADGQPGNKGEQGESGQKGDSGAPGPQGPSGAPGPVGPTGVTGPKGARGAQGAPGAT
GFPGAAGRVGPPGPNGNPGAAGPAGPSGKDGPKGVRGDAGPPGRAGDAGLRGPPGAPGEK
GEAGEDGPPGPDGPSGPAGLAGQRGIVGLPGQRGERGFPGLPGPSGEPGKQGAPGGSGDR
GPPGPVGPPGLTGPAGETGREGNPGSDGPPGRDGAAGVKGERGNTGPIGAPGAPGAPGAP
GSVGPIGKQGDRGENGPQGPAGPPGPAGARGMVGPQGPRGDKGEAGEAGERGQKGHRGFT
GLQGLPGPPGSPGDQGAAGPAGPSGAKGPSGPVGPAGKDGSNGQPGPIGPPGPRGRSGES
GPVGPPGNPGPPGPPGPPGPGIDMSAFAGLSQPEKGPDPLRYMRADEASSSLRQHDVEVD
ATLKSINGQIEDIRSPDGSRKNPARSCRDLKLCHPEWKSGDYWVDPNLGSAADAIKVFCN
METGETCVKPSTPKIPRKNWWTSKSKAQKHVWFGESMNGGFHFSYADGSQTPSTTTIQLN
FLRLLSTEATQTITYHCKNSVAYMDQATGNLKKAILLQGSNDVEIRAEGNSRFTYGVLED
GCKKHTGQWAKTVIEYKTQKTSRLPIMDIAPMDIGGADQEFGVDIGAVCFL
NT seq
4476 nt
NT seq
+upstream
nt +downstream
nt
atgttcagattgctggattcacggactctcctgctacttgtggcaacgcatagcgttttg
ctatcgcttgtaagatgtcaacaagaagatgaccaggaagagtttggcggctgtgttcaa
gatggccagcagtatgcagaccgtgcggtttggaaaccagaaccgtgccgtgtctgcgtg
tgtgattcggggactgtgctgtgtgacgaggtcatctgtgaggatctgaatgactgtgcc
aatcccatcatttcacctggagagtgctgtcccatctgcccagctgacaccgacgaccct
atcgggtcacttggtgcaaagggacagaaaggagaaccaggcgatattacagatgttgta
ggaccaagaggacctgctggaccaatgggacccccgggagagcagggaacacgtggagaa
agaggagctaagggtgagaagggaagtcccggcccaagagggagagatggcgagcctggt
acacctggaaacccaggaccccctggaccacccggacccaatggtccccctggacttgga
ggaaactttgctgctcagatggctggtggttttgatgagaaggcaggaggtgctcagatg
ggtgtgatgcagggaccaatgggtccaatgggtccccgtggtcctcctggcccctctgga
gcacctggcccacaaggtttccaaggcaaccctggagagactggtgaacccggccctgct
ggtgcccttggaccccgtggcccacccggcccccctggaaaacccggaagtgatggtgag
gctggcaaacctggtaaagctggtgagcgtggacccccaggacctcagggagctcgtgga
ttccctgggacccctggactccctggcatcaagggacacagaggacacccaggtctggat
ggtgctaaaggagaggctggtgctgcaggtgccaagggtgaggcaggttctaacggtgag
agtggcgctcctggaccaatgggtcctcgtggtctgcccggtgagagaggtcgccctggt
gcaactggtgctgctggtgcccgtggtaatgatggtctgcctggtcctgctggtcctcct
ggtcctgttggtcctgctggtgctccaggtttcccaggatcccctggatctaagggtgaa
gctggtcccactggggctcgtggacctgagggcgcacagggacctcgtggagaggctggt
acacctggatcacctggacccgccggtgcatccggtaaccctggtactgatggtattcct
ggagctaaaggatctgctggtgcttctggcattgctggtgctcctggtttcccaggacca
cgtggtccaccaggacctcagggagccactggacctcttgggcctaaaggacaatctgga
gaccctggtatcccaggattcaaaggcgaggctggacccaagggagagcgtggtgttcta
ggacctcaaggacctcctgggccatcaggtgaagagggcaagagaggaccaagaggagag
cctggttctgccggacctcttggacctcctggagagagaggagctccaggtaaccgtgga
ttccctggccaggatggacttgcaggagcaaagggtgctcctggtgatcgtggtgttcca
ggtttgagtggaccgaaaggaggcactggagatcctggtcgccctggtgaacctggtctt
cctggagccagaggtctcactggacgccctggtgatgctggagctcaaggaaaagtcgga
gcgactggtgcccctggtgaagatggccgccctggaccacctgggcctctgggagctcgt
ggtcagcctggagtgatgggattccctggacccaagggagccaatggtgaacctggaaaa
cctggagagaaaggacttgttggacgcactggtcttagaggtttgcctggtaaagatgga
gagactggaccttctggtcctcctggccctgttggtgctgttggtgagagaggagaacaa
ggtcaacctggtccatctggcttccagggtctgcctggacctactggagcccccggagaa
cctggtaaacctggtgaccagggtgttcctggagagggtggtgctgccggtcccactgga
ccaagaggtgagcgtggtttccctggtgagagaggaggcgctggccctcagggtctccaa
ggaccaagaggacttccaggaactcccggaacagatggacccaagggtgcgattgggcca
gctggtgctgctggagctcaaggtcctcccggtcttcaaggcatgcctggtgagagagga
gctgttggtatctctggagctaaaggtgacagaggtgactctggagagaagggacctgaa
ggtgctcctggtaaagatggttcaagaggtttgactggtccaattggcccacctggtcct
tctggtcccaatggcgcaaagggtgaaactggtcctattggttcaattggtgctcctggt
gctcgtggtgcccctggtgatcgtggtgagattggtgcacctggacctgctggctttgct
ggaccccctggtgctgatggccaacctggaaataagggagagcagggtgaatcaggacag
aaaggtgattcaggagcccctggaccccaaggaccatcaggtgctccaggcccagtgggc
ccaactggtgtcacaggacctaagggagcacgtggagcccaaggagcccctggtgccact
ggtttcccaggtgctgcaggacgagttggaccccctggccccaacggtaaccctggtgct
gccggcccagcaggtccttctggtaaggatggtcctaagggagttcgtggtgatgccggt
cccccaggtagagcaggagatgctggactgcgtggacctcctggtgctcctggagagaag
ggagaggctggtgaagatggtcctcctggtcctgatggtccttccggccctgctggtctt
gctggtcagcgtggtattgttggtttgcctggtcagcgtggtgaaagaggtttccctgga
cttccaggaccttctggtgagcctggcaaacagggagctccaggaggctctggtgaccgt
ggacctcctggccctgttggcccacctggattgactggacctgctggagagactggccgt
gagggtaatcctggatctgatggtccacctggtagagatggtgctgctggtgtgaagggt
gagcgtggtaacactggcccaattggtgctcctggagctcctggtgcccctggcgctcct
ggttcagttggtccaattggcaaacagggagacagaggagagaatggcccacaaggacct
gctggaccccctggacccgctggagctcgaggcatggttggaccccaaggacctcgtggt
gataagggtgaggcaggagaagctggagaaagaggccagaagggacacagaggattcact
ggtctgcagggtctgcccggacctcccggttctcctggagaccagggtgctgctggacct
gctggaccttctggtgctaaaggaccttcaggacctgttggacctgctggtaaggatggt
tctaatggtcagcctggacccattggtccacctggacctcgtggacgctctggagagtct
ggcccagttggtcctcctggtaaccccggaccccctggtcctcctggtccccctggccct
ggcattgacatgtctgccttcgctggattgtctcagccagagaagggacccgatcctctg
cgttacatgcgtgcagatgaagcctccagctctctcagacaacacgatgtggaggtggac
gccactctgaagtccatcaacgggcagattgaggatatccgcagccccgatggctcccgc
aagaatcctgcacgctcctgccgagacctgaaactctgccaccctgaatggaagagcggt
gactactgggtggatcccaaccttggtagcgctgctgatgccatcaaagttttctgcaac
atggagaccggagagacctgtgtgaaaccaagcactcctaaaatcccacgcaagaactgg
tggacaagcaagagcaaggcccagaagcacgtatggtttggagaaagcatgaacggcgga
ttccaatttagctatgctgatggcagccagactcctagtactaccaccatccagctgaac
ttcctcaggctgctgtctactgaggccactcagaccatcacctaccactgcaagaacagc
gtggcttacatggaccaagccacaggcaacctgaagaaggccattctgctgcagggctcc
aatgatgtggagatcagagcagagggcaacagccgctttacatatggcgtacttgaggat
ggctgcaagaagcacacaggtcaatgggccaagactgtgatcgagtacaaaactcagaag
acatccagactgcccatcatggacatcgctccaatggacatcggaggcgcagatcaggag
ttcggagtggacattggcgcagtctgcttcttgtaa
DBGET
integrated database retrieval system
