Danio rerio (zebrafish): 562676
Help
Entry
562676 CDS
T01004
Symbol
myo5c
Name
(RefSeq) unconventional myosin-Vc
KO
K10357
myosin V
Organism
dre
Danio rerio (zebrafish)
Pathway
dre04814
Motor proteins
Brite
KEGG Orthology (KO) [BR:
dre00001
]
09140 Cellular Processes
09142 Cell motility
04814 Motor proteins
562676 (myo5c)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dre03019
]
562676 (myo5c)
04131 Membrane trafficking [BR:
dre04131
]
562676 (myo5c)
03029 Mitochondrial biogenesis [BR:
dre03029
]
562676 (myo5c)
09183 Protein families: signaling and cellular processes
04812 Cytoskeleton proteins [BR:
dre04812
]
562676 (myo5c)
Messenger RNA biogenesis [BR:
dre03019
]
Eukaryotic type
mRNA surveillance and transport factors
Factors involved in mRNA localization
Cargo complex
562676 (myo5c)
mRNA cycle factors
P-body specific factors
562676 (myo5c)
Membrane trafficking [BR:
dre04131
]
Others
Actin-binding proteins
Myosins
562676 (myo5c)
Mitochondrial biogenesis [BR:
dre03029
]
Mitochondrial quality control factors
Mitochondrial dynamics
Retention of mitochondria
562676 (myo5c)
Cytoskeleton proteins [BR:
dre04812
]
Eukaryotic cytoskeleton proteins
Actin filaments / Microfilaments
Actin-binding proteins
Myosins
562676 (myo5c)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Myosin_head
DIL
IQ
ATG16
AAA_22
Csm1_N
Myosin_N
AAA_16
NPHP3_N
Motif
Other DBs
NCBI-GeneID:
562676
NCBI-ProteinID:
XP_691143
ZFIN:
ZDB-GENE-131127-196
Ensembl:
ENSDARG00000104235
UniProt:
E7FCI5
LinkDB
All DBs
Position
25:4787418..4836528
Genome browser
AA seq
1746 aa
AA seq
DB search
MALSELYTKYNRVWIPDAEHVWKSAEILTDFKPGDSELELQLEDGTELHYPLEGGEKLPP
LRNPDILVGENDLTALSYLHEPAVLHNLKVRFVESKIIYTYCGIILVAVNPYKQLPIYGD
AVIHAYSGQNMGDLDPHIFAVAEEAYKQMARNNKNQSIIVSGESGAGKTVSARYAMRYFA
MVSKSGSKTRVEDKVLASNPITEAIGNAKTTRNDNSSRFGKYTEISFDKRYQIIGANMRT
YLLEKSRVVFQSENERNYHIFYQMCACANQPEFKGLRLLGAEKFNYTRLGGEIEIEGVDD
RADMAETRRTFNLLGLKENFQTDVFKVLAAILHLGNVIIKAKDPEKSFIGSRDPHLAIFC
DLMGVSTENMSRWLCHRRIVLSTETVVKPQPRERAVNARDALAKHIYAHLFNWVIHKINH
ALMVPGKQHSFIGVLDIYGFETFEINSFEQFCINYANEKLQQQFNLHVFKLEQEEYMKED
IPWTLIDFYDNQPVIDLIEAKMGILDLLDEECLFPQGTDKNWLQKLYNFLGSKPLFEKPR
LSNDSFMIQHFADKVEYQCKGFLEKNRDTLYEELVDIMRASQFALLAGFFKEEEADSGHK
IIKVTPAQPRVKASNKQLRSTVGDKFRSSLYLLMETLNATTPHYVRCIKPNEEKLPFEYD
SRRVVQQLRACGVLETIRISAQSYPSRWTYVEFYSRYSILMSQSELKLGEKKQTCRTVLQ
RLIPDSNQYKFGRTKIFFRAGQVAYLEKLRLDHLRAACVTIQKHVRGWRQRRSFLNIRQA
ALIIQLYVRGKKQIRCTVTAQALKQGWAAIVIQRHCRGFLVRRIYQLVLRAAVTIQAFTR
GWMARKRYKKMVAEHKALVLQKYARAWLVRRRFQTMRRLVINVQLSYRVQQLRKKVEEQN
KENCGLMEKLTSLSNARAQGLEKIQALEAELGKLTNEMSALVQRAKTNSEEANQAIDVLQ
NDKEKLVEENKALERKLKDTTVQMQDQFEDVKRKLMEDLEREERLRKVAEHNSELQKEDS
DKEIVAIKEENRRLREERIRLQTQVEEDVKTNTELQEQMLQLTKHVKVIPDLRKEINNLQ
IQRAEAEKTLRAQNLQARAKMNLITRQLLGDATEQDLIQRLNEEASDNNDDGADLITAFD
GMERAAKVMETQLREQKDAHESQLEALIFKNEHLSKENEQLQALFQEKSDINQSIGQEVT
RLTAENMVIPELKQQVSELNRHKHELESQLQDQTAEMSAKLKELSSALHLAVEEEQSQRR
RLQEELTESQRRREETDRQISELQEENQQLKKAQITESQAKNTLRLETSRLTAENMDFEE
QLDMKDRLIKRLQDQIKALQTHAAANQKAAPAVPKEYLGMLEYKKEDEGRLIRILILELK
PRGVGVNMIPGLAAHLLFMCVRHADYLNDGNKLKCLMNNIITAVKEVITEHQENFELLSF
WLSNTYHFLNCLKQYSGEEEFMKHNTPRQNKNCLKNFDLSEHRQILSDLAINIYHQFISV
MEDALFPMIIPGMLEHESLQGISSMKPTGLRKRSSSVFEDGGDSSTSEAFSVSSILQKLS
TFNSSMCQQGMEPQLQGQIVRQLFYLIGSSSVNCILLRKDLCSCRKGMQIRCNISYLEEW
LREKDLLSSNAMETLGPLSQIAWLLQVNKTTDEDAAEIKQRCSELSAVQIVKILNSYTPI
DDFEKRVAPSFVRKVQALLQEREGSSQLMMDSQYRFQVTFPFCSSTQALELLQIPSSLHL
DFLTRI
NT seq
5241 nt
NT seq
+upstream
nt +downstream
nt
atggctttgtcggagttgtatacaaagtataacagggtgtggatccctgatgctgaacat
gtctggaaatctgcggagattttgacagattttaagcctggtgattctgagttggaacta
cagctggaggatgggacggagttgcattatcctctggaagggggtgaaaagttgccaccc
ctccgaaaccccgatatcctggtgggtgaaaacgacctgacggctctcagttaccttcac
gagccggccgtgctgcataacctcaaagtccgatttgttgagtccaaaatcatctacacg
tattgcggaataattttggtggctgtcaatccatataagcagcttcccatctatggagat
gcagtcatccatgcatactccgggcaaaacatgggcgatctggaccctcatatattcgct
gtggctgaagaagcctacaaacaaatggccaggaataacaaaaatcagtccatcattgtg
agcggtgagtccggggccggaaagactgtatctgctcgctatgctatgagatactttgcc
atggtcagcaaatccggcagcaaaacccgagtggaggacaaagttttggcgtccaatccg
atcactgaggccattggaaatgcaaaaacaacccgaaatgacaacagcagtcgatttgga
aagtacactgagatcagtttcgataaaagataccaaatcattggtgccaacatgaggacg
tatcttctggaaaagtccagggtggtgtttcagtcggagaacgagagaaattatcacatc
ttctaccaaatgtgtgcttgtgcaaatcagccggagttcaaaggcttacgactgttgggc
gcagaaaagtttaattacacacgtttgggtggtgagatcgagatcgaaggtgtggacgac
cgtgctgatatggcagaaacacgcagaaccttcaatctactgggtctcaaggaaaacttt
cagactgacgtgtttaaggtgctcgccgcaatcctgcatttaggaaatgtaataatcaag
gcaaaggacccagagaaatcattcatcggttccagagaccctcacctggccatattctgc
gacctcatgggcgtcagcacggaaaacatgagccgctggttgtgtcatagacggatagtc
ctgtcaacagagaccgtagtcaaaccgcagccccgggaacgtgctgtcaatgcacgcgac
gctcttgctaaacacatctacgcccatcttttcaactgggtcattcacaaaatcaaccac
gcgctgatggtccctggcaaacagcattcgtttattggggtcttggatatttacggattt
gagaccttcgaaattaacagtttcgagcagttctgcatcaactacgccaatgagaagctg
cagcagcagttcaacctgcacgtgtttaaactggagcaggaggagtacatgaaggaggac
attccctggacgctgatcgatttctacgacaatcagcccgttattgatctcatcgaggct
aagatgggcattctggaccttctagatgaggagtgtctgttcccgcaaggcactgataaa
aactggctgcaaaaactgtacaattttctaggctcaaagccgctgtttgagaagcctcgt
ttgtctaatgactctttcatgattcagcattttgctgataaggtagaatatcagtgtaaa
ggttttttggagaagaacagagacacgctttatgaagagctggtggatatcatgcgtgct
agtcagtttgctctcttggcaggattttttaaagaggaggaagcagattctggccataaa
atcatcaaagtgactccggcacaacctagagtcaaagcgtcaaacaagcagctcagaagc
actgtaggagacaagtttcgaagctccttgtacctgttgatggagacgctgaacgccacg
acacctcattatgtgcgctgcattaaacccaatgaggaaaaactgccattcgagtatgac
tccaggcgtgtggttcagcagctgagggcctgcggtgtgttggaaaccatccgtatcagc
gctcaaagttacccatccaggtggacgtacgttgagttttacagccgttacagtatcctg
atgagccagtcggagctgaagctgggagagaagaagcagacgtgcaggacggttcttcag
agactcattcctgactccaatcagtacaagtttggtcggaccaagatcttcttccgggcc
gggcaggtggcgtatctggagaagctgcgtttagatcatctgcgagcggcttgtgtgacc
atccagaagcacgtgaggggctggagacaaagacgcagctttctgaacatcagacaggcg
gctctcatcatacagctgtacgtgcgcgggaagaagcagatcagatgcacagtgacagct
caggcgttgaagcagggctgggctgcaatagtgatccaaagacactgccgcggttttctg
gtacggaggatttaccagctcgtcctgagagctgcggtcaccatacaggccttcaccaga
ggatggatggctcgcaaacgctacaaaaagatggtggcagaacataaggctctggttctg
cagaaatatgctcgagcgtggctggtgcgccggcggtttcaaaccatgcggcggctggtc
attaatgttcagctatcatacagagtccagcagctgcgtaagaaagtagaggagcagaat
aaagagaactgtggcctgatggagaaactcaccagcttgtctaacgcacgggctcaaggg
ttagaaaagattcaggctctggaggcggagctgggaaaactgaccaatgagatgtcagct
ttagtgcagagggcgaaaacaaactcagaggaggccaatcaggcaatcgatgtgcttcag
aatgacaaagagaagcttgttgaggaaaataaggctttggagcggaaactcaaagatacg
actgtgcagatgcaagatcaatttgaggatgtgaagcggaagctgatggaagatttagaa
agagaggaaagactaagaaaggtggcagagcacaacagtgaactgcagaaggaagactcg
gacaaagaaattgtggcgataaaagaggaaaaccgtagactgagagaggagcgaatcaga
ctgcaaacgcaagtggaggaggacgtgaagaccaacacagaactgcaagagcaaatgctg
cagctcaccaaacacgtcaaggtcataccagatttacgtaaagaaatcaacaacctgcag
attcaacgagctgaagctgaaaaaaccctgagagctcaaaatctacaagccagagctaag
atgaatctgatcacgaggcagctgcttggtgatgctacagagcaagatctcatccagagg
ctcaatgaagaagcctctgataataacgatgatggagctgatctaatcactgcttttgat
ggcatggagcgagctgctaaggtgatggaaactcaactgcgagagcagaaagacgctcac
gagagtcaactggaagctctgatcttcaaaaatgagcatttaagcaaagagaacgagcag
cttcaagctttgtttcaggagaagagcgacattaaccaaagcattggacaggaagtgact
cgactcaccgctgagaacatggtgattcctgaactgaagcagcaggtgtcagagctgaac
cgccacaaacacgagctggagagccagttacaggaccagactgctgagatgagcgcgaaa
ctgaaggagttatcgagtgcgctccatctggctgttgaagaggagcagtctcagcgcaga
cgcctgcaggaggagctgacagagagccagaggaggagagaggagacggacagacagatc
tctgagctccaggaggagaaccagcagctaaagaaagctcagatcacagagagccaagcc
aaaaacacactccgactggagacttcacgcctcaccgctgagaatatggacttcgaggag
cagctagacatgaaggacagattaataaagcgacttcaagaccaaatcaaagctcttcaa
acacacgctgcagccaatcagaaagcagctccagccgtacccaaagagtacctgggcatg
ctggagtacaagaaggaggatgaaggcaggctgatccggatactcatcctggagctgaag
cctcgcggtgtgggtgtgaatatgatccctggtttggctgctcatctgctcttcatgtgt
gtgagacacgcagattatctgaatgacggaaacaaactcaagtgcctcatgaacaacatt
ataacagccgtcaaagaggtcatcacggagcaccaggagaattttgaacttctgtccttc
tggctctcaaacacgtatcacttcctgaactgcctcaaacagtacagcggggaagaggag
ttcatgaagcacaacactccccggcagaacaaaaactgcctgaagaactttgacctttcg
gagcaccgtcagatactcagcgacctcgccatcaacatctaccatcagttcatcagcgtc
atggaggatgcgctgtttcctatgatcatcccagggatgctggagcatgaaagtctccag
ggaatctccagcatgaagcccaccggtctccgcaagcgctccagcagtgtgtttgaggat
ggcggagactccagcacgtctgaggccttcagcgtcagctccatcctgcagaagctcagc
acctttaactccagcatgtgtcagcagggcatggagccgcagctgcaggggcagatcgtc
agacagctcttctacctcattggctcctcatccgtcaactgcatcctgctccgcaaggac
ctgtgctcctgccgcaagggcatgcagatcaggtgtaacattagttatctggaggaatgg
ctgcgagagaaggatttgctgagcagcaacgctatggagactttggggccgctgtctcag
atagcctggcttcttcaagtcaacaagaccacagatgaagacgcagccgagatcaagcag
agatgctccgagctctcagccgtacagatcgtgaaaatcctgaactcctacacgcccatt
gatgattttgaaaagcgagtcgccccgtcatttgtacggaaggtgcaggcgctgctgcag
gagcgcgagggctcgtcacagctgatgatggactcgcagtatcgtttccaggtcacgttt
cccttctgctcctcaacacaggctctggagcttttacagattcccagcagccttcatctg
gacttcctcacccgcatctga
DBGET
integrated database retrieval system
