Danio rerio (zebrafish): 562793
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Entry
562793 CDS
T01004
Symbol
limd1a
Name
(RefSeq) LIM domain-containing protein 1 isoform X1
KO
K16682
LIM domain-containing protein
Organism
dre
Danio rerio (zebrafish)
Brite
KEGG Orthology (KO) [BR:
dre00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dre03019
]
562793 (limd1a)
03036 Chromosome and associated proteins [BR:
dre03036
]
562793 (limd1a)
Messenger RNA biogenesis [BR:
dre03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
562793 (limd1a)
Chromosome and associated proteins [BR:
dre03036
]
Eukaryotic type
Sister chromatid separation proteins
Aurora kinases
Regulators of Aurora kinases
562793 (limd1a)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LIM
zf_RING_Vps8
LIM_FHL2-3_N
Motif
Other DBs
NCBI-GeneID:
562793
NCBI-ProteinID:
XP_073781800
ZFIN:
ZDB-GENE-070712-1
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All DBs
Position
16:3209736..3247361
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AA seq
575 aa
AA seq
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MDKYDDLGLEASKFIEDLNMYEASKDGLFRVKRDAGNNPDFEETRKVFASKMTKIHIQKQ
QEEMAKTSLAARINGSLSKVSDNTLYTKDRPPINTYRQGGEAAAKPPIMSGPMVGTASVT
PYASYEGQKHHSTIIQHNDGPSSRVYDSPGNAVNSVPVPARAAPSVSPPGTWASRSGYPS
QTPSPFSNSSSSCSSPGAGQNHSPVGFLQISAKSPSQSPTGTYRDAFQVSPGLHSQPISA
QLSATQNGADHNIGTPTQVSQEAPQTKSTAPNNPAIPSPKPVLPIESPHEESFHALKLPC
PSLHVQTDQGPSVAEIKLEALTERLEKEMDTQPNAEYFGSCVKCNKAVYGASQACQAMGS
LYHDSCFTCSACSRKLRGKAFYFVCGKVFCEEDFLYSGFQQSADKCSVCGHLIMDMILQA
LGKSYHPGCFRCAICNESLDGVPFTVDTENKIYCVKDYHRVLAPKCAACNQPILPSEGSD
ETIRVVSMDRDYHVECYHCEVSLKATLLTFKIIVSCLAVISIFFLLYLFIYFLSSLPKKK
THNINNLHLFILFLFYFFFTINVHTHTHINSRGLS
NT seq
1728 nt
NT seq
+upstream
nt +downstream
nt
atggataaatacgacgatttgggactagaggcgagtaagttcattgaggacttgaacatg
tacgaagcgtcgaaggacggtttatttcgcgtgaagagggacgcgggaaacaaccctgat
tttgaagaaaccaggaaagtttttgcctcaaaaatgaccaaaatacacatccagaagcaa
caggaggagatggcaaaaaccagtttggcagcaaggatcaacgggagtctttctaaagtg
tcggataacacattgtacaccaaagacagaccacccatcaatacttacagacagggcggt
gaagcggcagctaaacctcccatcatgtctggaccaatggttggcactgccagtgtgact
ccatatgcatcttatgaaggacaaaaacatcattcgaccatcatacagcacaatgatgga
cccagcagcagggtttatgacagtcctgggaatgctgttaactcagtacccgtgccagcc
cgggcagcaccctctgtcagcccgcctggcacatgggcatcaagaagcgggtacccctcc
cagacaccatctcccttttcaaacagttcctcctcttgtagctcacccggagcaggtcag
aatcattcccctgtgggctttcttcaaatctcagcaaagtctccttcccagtcgcccaca
gggacatacagggacgcatttcaggttagccctggtctgcactcccaacccatctctgcc
caattgtctgccactcaaaatggagcagatcataacattggcacccctacccaggtgtcc
caagaggcaccccagaccaagagcactgcacccaataatccagcaattccttctcccaaa
ccagtgctccctattgagtcccctcatgaggagtctttccatgcgctcaaactgccatgc
ccgagccttcatgtacagacagatcaggggccatctgtggctgaaataaaattagaagct
ctaaccgaacgcttggaaaaggagatggacacccagccaaacgctgagtactttggcagc
tgtgtgaagtgcaacaaggcggtgtatggagccagtcaggcgtgtcaggccatggggagc
ctctatcacgacagctgcttcacctgtagcgcatgcagtcgaaagctcagagggaaagcc
ttttactttgtctgtgggaaagtgttttgtgaagaggacttcctgtactctggcttccag
cagtctgctgacaaatgcagtgtgtgtggacatttaatcatggacatgatcctgcaggcg
ctggggaagtcttaccacccaggctgcttccgctgcgccatctgtaacgagagtctggac
ggagtgcctttcactgtggacaccgagaacaagatctactgcgtgaaggactaccacagg
gttctcgctcctaaatgtgcagcctgcaatcagcccatccttccctctgagggatcggat
gaaaccattcgcgtggtctccatggacagggactatcatgtggagtgttaccactgtgag
gtgagtttgaaggcgacgctacttactttcaaaataatagttagttgtttagcggtcatc
agcatcttttttttactttatttatttatttattttttgtcgagtctaccaaaaaaaaaa
acacacaatatcaataatttacacctttttattttatttttattttattttttttttaca
ataaatgtacacacacacacacacattaatagcagaggtctttcttga
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