Danio rerio (zebrafish): 563276
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Entry
563276 CDS
T01004
Symbol
lig3
Name
(RefSeq) DNA ligase 3
KO
K10776
DNA ligase 3 [EC:
6.5.1.1
]
Organism
dre
Danio rerio (zebrafish)
Pathway
dre03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
dre00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
563276 (lig3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
dre03400
]
563276 (lig3)
Enzymes [BR:
dre01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
563276 (lig3)
DNA repair and recombination proteins [BR:
dre03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Short Patch-BER factors
563276 (lig3)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
LIG3_BRCT
zf-PARP
DNA_ligase_A_C
BRCT_2
RNA_ligase
mRNA_cap_enzyme
Itf52_C
Motif
Other DBs
NCBI-GeneID:
563276
NCBI-ProteinID:
NP_001025345
ZFIN:
ZDB-GENE-030131-8453
Ensembl:
ENSDARG00000052553
UniProt:
F1QJL4
LinkDB
All DBs
Position
5:60847823..60873092
Genome browser
AA seq
1011 aa
AA seq
DB search
MPSLWLGRALRTLSRSSLTKISWEPLFRATLKHQYLQCSRTLIFTRGSESSPSGVFFCAP
HTPAFTLISSSYFHISWPVRRSEQADMAEQRYCVEYAKRGTAGCKKCKDKIMKGLVRIGK
IVPNPFSESAGEMKEWYHVKCIFEKLERARATTKKIEDITELEGWEELQDEDKDLINKHV
SELAAKVNSTPKKKVQAKLNTSGQLSSPPADPTVNAPRKFSGFTATKAGSSSSSPGPSPA
KPAQGSVLSAQMCDPTHKDNLLREFRKLCALVAEKSGYNAKTEIVRDFLTKGSGGDKFRG
DLYLTVKLLLPGVVKNVYNLNDKQIVKLFSRILNCNQDDMVQDLEQGDVSETVRMFFEES
KSFPPSAKSLLTIQEVDASLSRLSQLTKEDDQQAELQSIAKKCTGNDLKCYIRLVKHDLK
INSGAKHILDAVDPNAYDAFKASRNLGDVIDRVLRNQQDASNGTGPRKILSIEASLMTPV
QPMLAEACKSIEYAMKKCPNGMYSEIKYDGERVQVHKNGNHFSYFSRSLKPVLPHKVAHF
KDFIPQAFAGGHSMILDAEVLLIDTKTSKPLPFGTLGVHKKAAFQDAQVGLFVFDCIYFN
GVSLMDKPLCERRKFLHDNMVEVPNRILFSEMKHVTRAPDLAEMITRVIREGLEGLVLKD
IKGLYEPGKRHWLKVKKDYLNEGAMADTADLVVLGAFYGKGSNGGIMSSFLMGCYDPESR
KWCTVTKCSGGFDDAMLDRLQKDLDVIKIGKDPSKIPGWLKIVKNYYPDFIIRDPQKAPV
WEITGAEFSKSEMHTADGISIRFPRCTRMRDDKDWKTATNLQQLKELYRISKENCDFEVT
AGPSKANQNDKSSSGGESGGSSPSASRGASTANKPKNGHTPKAKAAKTESSAPAVKRKLP
AEKQDVKKIKTESVHSNGQSKLKSVPTTDPKQEKTLLDIFTGVKLYLPESVKDFEKLRRY
FLAYDGDLVPEYDSALATHTLGQPEDGSSAQKVTSNWIWECIRKRRVVPPC
NT seq
3036 nt
NT seq
+upstream
nt +downstream
nt
atgcccagtctttggcttggcagggcattaagaacactcagcagatcatctttgaccaaa
atttcttgggagcctttatttagagcaacactcaaacaccaatatctccagtgctcgagg
actcttatatttacacggggctctgaatcaagccccagtggagtctttttctgtgcgcca
cacactccagcatttactttaatatccagctcttatttccacatttcctggcctgtgcgg
aggagtgaacaagcggatatggcggagcagagatactgtgttgaatatgccaaacgtggc
acggctggctgcaagaaatgcaaagacaagatcatgaaaggtctggtcaggatcggcaag
atcgttccaaacccattcagcgagtctgcaggggaaatgaaggaatggtatcatgtaaag
tgtatctttgagaagcttgagagagcgcgggccaccacaaagaagattgaggacatcact
gaactggagggatgggaggaacttcaggatgaggataaagatctcatcaataaacacgtt
tcagaactggcagctaaagttaattcaaccccaaagaagaaagtgcaagcaaagctaaac
accagtgggcagctgtcatcgccgccagctgatccaacagtcaatgctcctcgcaagttt
tctggcttcacagctaccaaggccggttcctcttcctccagtcctggaccatctccagcc
aaacccgctcagggtagcgttttatcagctcagatgtgtgaccccacacataaagacaac
ttacttcgtgagttcagaaaactctgtgctttagtggcagagaagtcgggctacaacgcc
aagacggagatcgtcagagacttcttaacaaaaggctcaggtggagacaaattcagagga
gatttgtacctgacagtgaagcttctcctcccaggcgtagtgaagaatgtgtacaacctc
aatgacaaacaaatcgtcaagctttttagccgcatactgaattgcaatcaggatgacatg
gtgcaagacttggaacagggagatgtttcggagacggtgcggatgtttttcgaggaaagc
aagtctttccctccttcagcaaaaagtcttctgaccatccaagaggtggatgcttcgctg
agccgattatcccagctcacaaaggaggacgatcagcaggcagagctgcagagcattgcc
aaaaaatgcaccgggaatgatctgaagtgctacattcgtttggtcaaacatgatttgaaa
atcaactcaggggcgaaacacattttggatgctgtagaccccaatgcctatgatgccttc
aaagcctcccgtaatctcggtgatgtgatagacagagtgctgcgtaaccagcaggatgct
tctaatggaactggcccccgaaagatcctcagcatcgaggcatctctgatgactccagta
cagccaatgctggcagaggcatgcaagtccattgagtacgccatgaagaagtgtcctaat
gggatgtattctgagatcaaatatgatggtgagcgcgtgcaggtccataagaacggcaat
cacttcagttacttcagtcgcagtctcaaaccagtcctcccacacaaggttgcccatttt
aaggacttcataccgcaggcgtttgctggtggtcatagcatgatccttgatgctgaagtt
cttcttattgacacaaagactagcaaaccactgccttttgggactcttggagtacacaag
aaagccgcttttcaggatgctcaagtgggcctgttcgtgttcgactgcatttattttaat
ggtgtcagtctaatggacaagcctctctgtgagagaagaaagtttctccatgataatatg
gtggaagttcctaaccgaattctgttctcagaaatgaagcatgtcacaagagctcctgat
ctggcagaaatgatcacgcgtgtcatcagagaggggctggagggcttggttctgaaggat
ataaagggcctttatgaaccaggaaaacgccactggctgaaggtgaagaaagactatctg
aatgaaggagcgatggcggacactgctgatcttgtggtgcttggagccttctatggcaaa
ggctcaaatggtggaattatgtccagtttcctcatgggctgctatgacccggaatccagg
aagtggtgcaccgttaccaagtgttcaggaggcttcgacgacgccatgttagacagactg
cagaaagatttggacgtgattaaaattggcaaggatccaagcaagatcccaggatggttg
aagattgtcaagaactattacccagatttcattatccgagatccacaaaaagcaccagtg
tgggaaatcacaggagcagagttttctaaatctgaaatgcacactgctgatggcatatcc
atccgattcccacgatgcacccgaatgcgtgatgacaaggactggaagacggcaactaac
cttcagcagctcaaggagctatatcgcatctcaaaggagaattgtgattttgaggtgacc
gctggtccatccaaagcgaaccaaaatgacaagagctcctcaggaggtgagagcggagga
agctctccatctgcatctcgcggagcatccacagctaacaaacccaaaaatggtcatacc
cccaaagcaaaggctgcgaaaacagaatcatctgctccggcagttaagaggaaactacca
gctgagaaacaagatgttaagaagataaaaacagaatcggttcacagcaatggtcaaagc
aaattgaagagcgttccaacaaccgacccgaagcaagaaaagacactacttgacattttc
accggagtaaagctctacctccctgaatcagtgaaagactttgagaagctccgacgctac
tttctagcatacgatggagatttggtgcccgagtatgactctgctttagccacacacacg
ctaggacagccagaggatggcagttcagcccagaaggtcacctccaactggatctgggaa
tgcatccggaaaaggagggtggttcccccctgctga
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