KEGG   Danio rerio (zebrafish): 563948
Entry
563948            CDS       T01004                                 
Symbol
lsm5
Name
(RefSeq) U6 snRNA-associated Sm-like protein LSm5
  KO
K12624  U6 snRNA-associated Sm-like protein LSm5
Organism
dre  Danio rerio (zebrafish)
Pathway
dre03018  RNA degradation
dre03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:dre00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    563948 (lsm5)
  09123 Folding, sorting and degradation
   03018 RNA degradation
    563948 (lsm5)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:dre03019]
    563948 (lsm5)
   03041 Spliceosome [BR:dre03041]
    563948 (lsm5)
Messenger RNA biogenesis [BR:dre03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     563948 (lsm5)
  mRNA degradation factors
   5'-3' decay
    Lsm complex
     563948 (lsm5)
Spliceosome [BR:dre03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   LSm proteins
    563948 (lsm5)
SSDB
Motif
Pfam: LSM SM-ATX
Other DBs
NCBI-GeneID: 563948
NCBI-ProteinID: NP_001093908
ZFIN: ZDB-GENE-070822-23
Ensembl: ENSDARG00000071573
UniProt: A7E2L8
LinkDB
Position
12:complement(13904041..13909547)
AA seq 91 aa
MAAITATNPSQLLPLELVDKCIGSRIHIVMKNDKEIVGTLLGFDDFVNMVLEDVTEFEIT
PEGRRITKLDQILLNGNNITMLIPGGEGPEV
NT seq 276 nt   +upstreamnt  +downstreamnt
atggcggcaatcacagcaacgaatccttcgcagcttttaccactcgagctggtggataag
tgcattggctctcggattcacatcgttatgaagaacgataaagagattgtgggaactctg
cttgggtttgacgactttgtcaacatggtcctagaggatgtcacagaatttgaaatcaca
ccagagggaagaagaatcacaaaactggatcagattctccttaatggcaataacatcaca
atgctgattccaggaggagaaggaccagaagtttga

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