Danio rerio (zebrafish): 564106
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Entry
564106 CDS
T01004
Symbol
si:dkey-219c3.2
Name
(RefSeq) transcription initiation factor TFIID subunit 4 isoform X1
KO
K03129
transcription initiation factor TFIID subunit 4
Organism
dre
Danio rerio (zebrafish)
Pathway
dre03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
dre00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
564106 (si:dkey-219c3.2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
dre03021
]
564106 (si:dkey-219c3.2)
03036 Chromosome and associated proteins [BR:
dre03036
]
564106 (si:dkey-219c3.2)
Transcription machinery [BR:
dre03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIID
564106 (si:dkey-219c3.2)
Coactivators
SAGA/TFTC/STAGA complex
564106 (si:dkey-219c3.2)
Chromosome and associated proteins [BR:
dre03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
TFTC complex
564106 (si:dkey-219c3.2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TAF4
TAFH
Serglycin
Motif
Other DBs
NCBI-GeneID:
564106
NCBI-ProteinID:
XP_005163125
ZFIN:
ZDB-GENE-090313-238
Ensembl:
ENSDARG00000075805
UniProt:
E7FFQ2
A0AB40EDI1
LinkDB
All DBs
Position
25:20272202..20356885
Genome browser
AA seq
949 aa
AA seq
DB search
MAGVPDPLEDMLYSEVDEKAVSDLVGSLESQLGGQNKTVGPQGDARRASNALNPHLGKLL
PAQVGTTLEQQQRQRQAERNQEGNSQENGPDRIPASNCVPATANLPANTSANLVPAANLA
QYHSSNPSTCSSDAAAPTDSHPNTNHIACAVRTVPARTQPVNGSSSTLNSSVIASAPASV
NGIDVGSGGGSGNKSNMSAPTSTNTAFVPAQPNSTLPHANVSLDSQANPTIALHRPPNTI
TSVVHNGGDPKVSGLPVQGAALVPTPVAFTNTEPKSDPQNQIKAIVPNQLPGAPVGLHPS
TPTQIIVSSSPVVTSLPVASTPSALPKPTATALVGQPTTLLRPATPTQGTPTATPQQRPG
APTTQLIVRPPQQTTIQLPPGFTIPPGMVLVRTEAGQLALVPQQVLAQAKAQNQNKGTLS
PRPATPTAGAPFRVTTPVAQQKTAVVTITSAQKPTTTVITAGARVQPAPQTVLKPSVTPQ
SPVTPPVTVSANRAPVLSQEMQENVKKCKNFLATLIKLASHNSPSPETSRNVKALVQDLL
DAKIEPEEFTNRLQTELKSSPQPYLIPFLKKSLPALRLTLLNSQQSLTQLSQTSATAAAP
LPVNTIKAPAPSTLSTTIRPTTALTPASALAVKRPGVQTTPTRMPVVITQTVRAQGAIGT
PLQVRSPMGVAIHASANQKQKLNDPGGGTFRDDDDINDVASMAGVNLNEENARILATGSE
LVGTQIRSCKDEAFLPASLLHKRLLETAKKFGVTEVSMETVTLISHATQSRLRSMLEKVS
AVAQHRADSCKDEDLYEQTSDVRTQLKFFEQLEKIEKQRKDDEERELLMKAAKSRSRQED
PEQARLKQKAKEMQQQELAQMRQRDANLTALAAIGPRKKRKLDSPGASAGAELPAGSSGS
ATGSTSSSSSSVRQTRQRITRVNLRDLIFCLEQERTTARSTLLYKALLK
NT seq
2850 nt
NT seq
+upstream
nt +downstream
nt
atggcgggtgtccccgatccactggaagatatgctctattccgaagtggacgaaaaagcc
gtcagtgacctcgtaggctcgttagaatcgcaattaggtggacaaaacaagacagtcggt
cctcaaggcgacgccaggagagcttcgaacgcgctaaatccacacttggggaaattactg
cccgcccaagtaggaacaacactggagcagcagcagcggcagcggcaagcagaacgaaac
caggagggaaactctcaagaaaacggtccggacaggataccggcgtccaattgtgtccct
gccaccgcgaacctgcccgcgaacacttctgcaaatttggttcccgccgcgaacctggcg
caatatcattcatcaaatccatcaacttgttcaagtgacgcagcagcaccaacagactct
catcccaacacaaatcacattgcgtgtgctgtccggacggttcccgccagaacacagcca
gtgaacggaagcagtagcacgttaaactcttctgttatcgcttctgctcctgcttctgtg
aacggtattgacgttggttcaggtggaggtagtggtaataaaagcaacatgtctgctcct
acttctacaaatactgcttttgtgcccgctcagcccaacagcacactgccacatgcgaat
gtgtcactagatagtcaagcaaatcccaccatagcactgcacaggcctcctaacaccatc
actagtgtcgtccacaacggaggtgaccctaaagtctcaggattgcccgtgcagggggct
gctcttgtgcccacccctgtggcgttcacaaacactgagcccaaatctgaccctcaaaac
cagattaaagccatcgtcccgaaccagctcccaggggctcctgtagggttgcaccccagc
acacccactcaaataattgtgtcgtccagtcctgtggtgacctcacttcctgtggcaagc
accccttctgcccttccaaagccaacagcaactgctcttgtaggacagcctaccaccctg
ttgagacctgctacgcccactcaagggacaccaactgcgacaccccaacagcgcccgggg
gctcctacgacccagctgattgtcagaccaccacaacaaaccaccattcagttaccacca
ggattcaccataccaccaggtatggtgctggtccgtacagaggccggtcagctggcgttg
gttcctcagcaggtcttggctcaggctaaagctcagaaccaaaataaaggcaccctgtcc
ccgagacctgctacacccactgctggagcacctttcagagtcaccacaccagttgcccag
cagaagaccgcagtagtaaccattacctcggctcagaagcccaccaccacagtcatcaca
gcaggagcacgtgtgcagcccgccccacagacagtcctcaagccctccgtgacccctcag
agtcctgtcaccccccctgtcactgtctcagctaacagagcccctgtcctctctcaggaa
atgcaagagaatgtaaagaagtgcaagaacttcctagcaacgctcatcaaactggcatcc
cataattccccctcgccagaaacatctcgtaacgtgaaagcacttgtacaggatctgctg
gatgcaaaaattgagccagaggagtttacaaatcgcctgcagacggagttgaaatcatct
cctcagccgtacctgatcccttttctcaagaaaagcctgcctgctctgcgtctgaccctt
ctgaactctcagcagtctttaactcagctgtctcagacctctgctacagcagcagctcct
ctgccggtcaacaccattaaagctccggcaccgagcacgttatccacaaccatcagaccc
accactgccctcacgcccgcctcagcactggctgtcaagaggcctggagttcagacaact
ccgacacggatgccggtggtgattacacagacagttcgtgctcaaggtgctattgggaca
cccttgcaagtgaggagccccatgggtgtggccattcatgcctcggccaatcagaaacag
aagctcaatgaccccggaggcgggactttcagggatgatgacgacatcaatgacgtggca
tccatggctggtgtgaacctgaacgaggaaaacgcccgtatcttggccacgggttcagag
ctggtgggcacccagatccgctcctgtaaggatgaggccttccttcctgccagcctgctc
cacaaacgactcctcgaaaccgccaagaagttcggcgtgacggaggtgtcaatggagacg
gtcactctcatttctcacgctactcagtctaggctgcgctccatgctggagaaagtgtcg
gccgttgcgcaacaccgagccgattcatgtaaagatgaagatctgtatgagcagacgtca
gatgttcggacccaactgaagttctttgagcagctggagaagatcgagaagcagaggaaa
gatgacgaggaacgggagctgctaatgaaagccgcaaaaagtcgctcgaggcaagaggat
cccgaacaggcccggctgaagcagaaagctaaagagatgcagcagcaggaactcgcccag
atgagacagcgggatgccaacctcacagcccttgccgccattggaccccgcaagaaacgc
aagctcgactctcctggggcctcagcaggtgcagagcttcctgcgggctcctccggatca
gcgaccggttctacctcatcctcttcatcctcagtcaggcagacccgtcagcgcatcacc
cgggtcaacctcagggacttgatcttctgcttggagcaggagcgaaccacggccaggtcc
acgctgctctacaaggcccttttgaagtag
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integrated database retrieval system
