Danio rerio (zebrafish): 564412
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Entry
564412 CDS
T01004
Symbol
ush1c
Name
(RefSeq) harmonin
KO
K21877
harmonin
Organism
dre
Danio rerio (zebrafish)
Brite
KEGG Orthology (KO) [BR:
dre00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
03037 Cilium and associated proteins [BR:
dre03037
]
564412 (ush1c)
Cilium and associated proteins [BR:
dre03037
]
Primary cilia and associated proteins
USH complex and associated proteins
564412 (ush1c)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PDZ
USH1C_N
PDZ_6
PDZ_2
Baculo_LEF5_C
DUF3567
Motif
Other DBs
NCBI-GeneID:
564412
NCBI-ProteinID:
NP_001035018
ZFIN:
ZDB-GENE-060312-41
Ensembl:
ENSDARG00000051876
UniProt:
Q29RC0
LinkDB
All DBs
Position
25:23850402..23911171
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AA seq
548 aa
AA seq
DB search
MERKVAREFRHKVELLIDNEAEKDYLYDVLRMYHQSMDLPVLVGDLKLVINEPKRLPLFD
AIRPLIPLKHQVQYDQLTPKRSRKLKEVRLDRTHPEGLGLSVRGGLEFGSGLFISQIVKD
GQAGNVGLQVGDEIVRINGYSISSCIHEEVINLIKTKKTVSLKVRHVGMIPVKSSSDEPL
KWQFVDQFVSESGEKSNSIAGLASIGGNEIKEKKVFLSLVGTKGMGISISSGPTKKPGIY
VSNVKPGSLSAEVGLQVGDQIVEVNGVEFTNLSHQEAVRVLKSSRSLTITVLTGAGSELF
MTDEERLAVEARHELDRQELMHQKKVALETNKIVKEQQEKERQRKMEISQKAAEEEERYR
KEMERIEAAEKKHHKEWEDDWGSKEKKKSVSPAASPSPPPPTRLAPSPKPKTSTADSYEE
ETGEGFQKYVDDFDPHSMFTAEQIAGRDVRLLRIKKEGKLDLAIEGGIDSPLGKIVVSSI
YEGGAADKHGGVVSGDEIMAVNGKILTDVTLAEGQTSMAQAWNSGGDWIDLVIAVSPPKE
YEDEVTFF
NT seq
1647 nt
NT seq
+upstream
nt +downstream
nt
atggaaagaaaagtggccagggaatttcggcataaggtggagttgcttattgataatgaa
gcagagaaggactacctttatgatgttcttcgcatgtaccatcaatccatggacctgcct
gtccttgttggtgacctgaagctggtaataaatgagcccaaacgccttcctttgtttgat
gccatcagacccttgattcctctgaagcaccaagtgcagtatgaccagctcacgcccaag
agatccaggaagttgaaggaagttcgtctggatcgcacacaccccgagggtctgggtttg
agtgttcgaggaggactggagtttggctctggcctctttatatcgcagatagtcaaagat
ggacaggctggaaatgtcggcctgcaggtcggtgatgagattgtgcgcatcaacggctac
tccatctcttcctgcattcacgaggaggtcatcaacctcatcaagaccaagaagactgtg
tctttgaaagtccgccatgtgggaatgattcctgtcaagagctcctccgatgagcctctg
aagtggcagtttgtggatcagtttgtttcggagtcaggggagaagagtaacagtattgct
ggcttggcttcaattggagggaatgaaattaaggaaaagaaagtgttccttagtttggtg
ggcaccaaaggcatgggaatcagcatatcaagtggaccaacaaagaaaccaggcatctac
gtgagcaatgtgaagccgggttcactctcagctgaagtgggcttacaggttggcgaccag
attgtggaggtcaatggggtggaattcaccaacctgagtcatcaagaggcagtgcgggtg
ttaaagagcagcaggagtctaaccatcaccgtactcactggggctggaagtgagctgttt
atgacggatgaggagcggttggcggttgaagctcgacatgagctggacagacaggagtta
atgcatcagaagaaagtggcattagagaccaacaaaattgtcaaagaacaacaggagaaa
gaacgccagaggaagatggagatatctcagaaggctgcagaggaagaagagcgctatcgc
aaagagatggaaagaattgaagctgcagagaagaaacaccacaaagagtgggaagatgat
tggggctccaaggaaaaaaaaaaatctgtttccccggccgcttctccatcccctccacca
cccacacgtcttgcaccttcacccaaacctaaaacctccactgctgattcctacgaagaa
gagaccggagaagggtttcagaaatacgtggatgattttgatccacattccatgttcaca
gccgaacagatagcaggcagagatgtgcgacttttaagaattaagaaggaaggaaagctt
gatctggccattgagggaggaatcgattccccattgggaaagattgtggtgtcgtctatc
tatgaaggaggtgcagcagataaacatggtggggttgtgtcaggtgatgagatcatggca
gtgaatggaaagattttgacagatgtgactctagctgaaggacagacctcaatggctcag
gcctggaacagtggaggggactggattgacctggtcatcgcagtgtctccaccaaaggaa
tatgaagatgaggtgacattcttttaa
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