Danio rerio (zebrafish): 564652
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Entry
564652 CDS
T01004
Symbol
smarcd3a
Name
(RefSeq) SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 3 isoform X1
KO
K11650
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D
Organism
dre
Danio rerio (zebrafish)
Pathway
dre03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
dre00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
564652 (smarcd3a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
dre03021
]
564652 (smarcd3a)
03036 Chromosome and associated proteins [BR:
dre03036
]
564652 (smarcd3a)
Transcription machinery [BR:
dre03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
564652 (smarcd3a)
Chromosome and associated proteins [BR:
dre03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
564652 (smarcd3a)
PBAF complex
564652 (smarcd3a)
GBAF(ncBAF) complex
564652 (smarcd3a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SWIB
SWIB_eIF2D
Motif
Other DBs
NCBI-GeneID:
564652
NCBI-ProteinID:
XP_005163573
ZFIN:
ZDB-GENE-070912-491
Ensembl:
ENSDARG00000038786
UniProt:
A0A8M2BAQ8
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All DBs
Position
2:complement(35485352..35529520)
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AA seq
518 aa
AA seq
DB search
MDMEDSAGGARKATKSKLFEFLVHGVRPGMTSGARMPHQGAPMGPPGPPYGGTPQIRPGM
PNPALDPNRKRPAPTQPVQPPSVQNRSRKKPLGFPAANEISARQMDMREAQSDPAIGSNA
KRRKMADKILPQRIRELVPESQAYMDLLAFERKLDQTIMRKRVDIQEALKRPMKQKRKLR
LYISNTFNPAKPDTEDSEGSIASWELRVEGKLLDDPGKQKRKFSSFFKSLVIELDKDLYG
PDNHLVEIALKHAAKIGETQWHRTPTTQETDGFQVKRPGDVNVRCTLLLMLDYQPPQFKL
DPRLARLLGIHTQTRSCIIQALWQYVKTNKLQDSHEKEYINCDKYFQQIFDCPRLKFCEI
PQRLTNLLLPPDPIVINHIISVDPNDQKKTACYDIDVEVDDPLKGQMNGFLLSTANQQEI
ASLDNKIHETIESINQLKIQRDFMLSFSRDPKGYIQDWICSQNRDLKLMTDTVGNPEEER
RAEFYNQPWSQEAVSRYFYCKIQQRRQELEQALAMRTT
NT seq
1557 nt
NT seq
+upstream
nt +downstream
nt
atggacatggaggattcagccggaggagcgcgcaaagccaccaagagtaaactgtttgag
ttcctcgtccatggagtgcgtccaggaatgacctcaggggcacggatgccccatcaagga
gctcccatggggcctccaggacccccatatggaggaactccacagatccggccagggatg
ccaaatccagccctcgaccccaaccgaaaacgtcccgccccgacccagcctgtgcaacct
ccctctgtccagaaccgttccagaaagaaaccacttggatttccggcagcaaatgagata
tcagcgagacagatggacatgagagaagcccagtcagatcctgcaattggatccaatgcc
aagagaagaaaaatggcagacaagattctccctcagaggattcgtgaactggtgcctgag
tcgcaggcatacatggacctcctggcctttgagcggaaacttgaccaaaccattatgagg
aagcgggtggatatccaggaggccctcaaaagaccaatgaagcaaaagcggaagctgcga
ttgtacatttccaacactttcaaccctgccaaacctgacacagaagactctgagggcagc
attgcatcctgggagctgcgcgtagagggcaagttgttggatgatcctggaaaacaaaag
aggaaattttcatctttctttaagagccttgttatcgaacttgacaaagatctgtacggc
cctgacaaccacttagtggagatagcgctgaaacatgcggcgaaaattggggaaacgcaa
tggcaccgcaccccaacgacccaggagacagatggcttccaggtgaagaggcctggagat
gtaaacgtgcgctgtactctcttgctcatgctggattaccagcctcctcagtttaagctg
gatcctcgtcttgcccgtctgcttggcatccacactcagacccgctcctgcatcatccag
gctctgtggcagtacgtcaaaaccaacaagctgcaggattctcatgagaaagagtacatc
aactgtgataaatatttccagcagatttttgactgtcctcgtctgaagttctgtgaaatc
cctcagcgacttaccaacctgctgctgccgcctgatcctatcgtgatcaatcacattatc
agcgtggatcccaacgaccagaagaagaccgcctgctatgacattgatgttgaagttgat
gatcctcttaagggtcagatgaatggatttctgctgtccacagctaatcaacaagagatt
gcatctctagacaacaagatccatgaaactattgagtctatcaaccaactgaaaatccaa
agagatttcatgctcagcttctccagggaccccaagggctacatccaggactggatctgc
tcccagaaccgggacctcaagctgatgacagatacagtcggaaatccagaggaagagaga
agagcagagttttacaaccagccttggtctcaagaagccgtcagtcgctacttctactgc
aagattcaacagcgaagacaggagcttgaacaagctttagcgatgcgaacgacttaa
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