Danio rerio (zebrafish): 564951
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Entry
564951 CDS
T01004
Symbol
roraa
Name
(RefSeq) nuclear receptor ROR-alpha A
KO
K08532
RAR-related orphan receptor alpha
Organism
dre
Danio rerio (zebrafish)
Brite
KEGG Orthology (KO) [BR:
dre00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
dre03000
]
564951 (roraa)
09183 Protein families: signaling and cellular processes
03310 Nuclear receptors [BR:
dre03310
]
564951 (roraa)
Transcription factors [BR:
dre03000
]
Eukaryotic type
Zinc finger
Cys4 thyroid hormone receptor-like
564951 (roraa)
Nuclear receptors [BR:
dre03310
]
1. Thyroid hormone like
1F. RAR-related orphan receptor
564951 (roraa)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-C4
Hormone_recep
Motif
Other DBs
NCBI-GeneID:
564951
NCBI-ProteinID:
NP_001103637
ZFIN:
ZDB-GENE-060306-2
Ensembl:
ENSDARG00000031768
UniProt:
F1QLY4
LinkDB
All DBs
Position
25:35947501..36473677
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AA seq
468 aa
AA seq
DB search
MMYFVISAMKAQIEIIPCKICGDKSSGIHYGVITCEGCKGFFRRSQQSNAAYSCPRQKNC
LIDRTSRNRCQHCRLQKCLAVGMSRDAVKFGRMSKKQRDSLYAEVQKHRLQQQQRDHQQQ
PGEAEPLTPTYGLSTNGLTELHDDLSGYMNGHTPDGTKPDSGVSSFYLDIQPSPDQSGLD
INGIKPEPICDFTPGSGFFPYCSFTNGETSPTVSMAELEHLAQNISKSHMETCQYLREEL
QQMTWQAFLQEEVENYQSKPREVMWQLCAIKITEAIQYVVEFAKHIDGFMELCQNDQIVL
LKAGSLEVVFVRMCRAFDPQNNTVYFDGKYAGPDVFKSLGCDDLISSVFEFGKNLCSMHL
SEDEIALFSAFVLMSADRSWLQEKVKVEKLQQKIQLALQHVLQKNHREDGILTKLICKVS
TLRALCSRHTEKLTAFKAIYPDIVRAHFPPLYKELFGSDFEQSMPVDG
NT seq
1407 nt
NT seq
+upstream
nt +downstream
nt
atgatgtattttgtgatttcagctatgaaagctcaaatcgaaataattccctgcaagatc
tgtggagacaaatcatcaggcatccattatggcgtgataacgtgcgagggctgcaagggc
ttcttcaggaggagtcagcagagcaatgcggcgtactcgtgcccgcgtcagaagaactgc
ctgattgaccgcaccagccggaaccgctgccagcactgcaggctgcagaagtgtctggcc
gtgggcatgtcacgtgacgcggtgaagtttggccgaatgtcaaagaaacagcgggacagc
ctgtatgcggaagtgcagaaacaccggctacagcagcagcagcgggaccaccagcagcag
cccggtgaagccgaaccccttaccccaacttatggcctctccaccaatggtctgaccgag
ctccacgatgatctgagtggatacatgaatggccacacgccggatggcaccaagcctgac
tcaggagtcagcagcttctacctggacatccaaccctcacctgatcaatccggcctggac
atcaatggcatcaagccagagcccatctgcgactttacccctggctcaggcttcttcccc
tactgctccttcaccaatggggagacgtcccccaccgtttccatggctgagttggaacat
ctggcccagaacatttccaagtcccacatggagacgtgtcagtacctgagagaagaactt
cagcagatgacctggcaggcgttccttcaggaggaggtggagaactaccagagcaagccc
agggaagtcatgtggcagttgtgtgccatcaaaatcacagaggccattcagtatgtggtg
gagtttgccaagcgcatcgacggcttcatggagctctgtcagaatgatcagatagtgctt
ctcaaagcaggctctttggaggtggtgttcgtcagaatgtgccgtgccttcgaccctcag
aacaacacagtctatttcgatggaaagtatgccgggcctgatgtctttaaatcattaggc
tgcgacgacttgatcagctctgtcttcgagtttgggaaaaacttgtgttctatgcacctc
tctgaagacgagatcgccctgttctccgccttcgtcttgatgtctgccgaccgatcctgg
ctccaggagaaggtgaaggtggagaaactccagcagaagatccagctggccctccaacat
gttctgcagaaaaaccacagagaggacggcatactgacaaagttgatatgcaaagtgtcc
acgctgcgagccctgtgcagccggcatacggaaaagctgacggcgttcaaagcaatatac
ccagacattgtccgcgcacatttcccccctttgtacaaggagttattcggatcggacttt
gagcagtcgatgcccgttgacgggtag
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