Danio rerio (zebrafish): 565026
Help
Entry
565026 CDS
T01004
Symbol
tgfbrap1
Name
(RefSeq) transforming growth factor-beta receptor-associated protein 1 homolog
KO
K20177
vacuolar protein sorting-associated protein 3
Organism
dre
Danio rerio (zebrafish)
Pathway
dre04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
dre00001
]
09140 Cellular Processes
09141 Transport and catabolism
04148 Efferocytosis
565026 (tgfbrap1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
dre04131
]
565026 (tgfbrap1)
Membrane trafficking [BR:
dre04131
]
Endosome - Lysosome transport
Tethering complex
CORVET complex
565026 (tgfbrap1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Vps39_1
CNH
zf-Vps39_C
Clathrin
TPR_Vps41
DcpS
Motif
Other DBs
NCBI-GeneID:
565026
NCBI-ProteinID:
NP_001077023
ZFIN:
ZDB-GENE-070410-66
Ensembl:
ENSDARG00000061508
UniProt:
A4IG72
LinkDB
All DBs
Position
6:complement(15036828..15065325)
Genome browser
AA seq
863 aa
AA seq
DB search
MSVKAFDLVPAVEREQVMGEKVRINIECIECCGQHLYLGTNDCFIHHFLLEEHTTAKGKL
AFNAQKLLHKYLGLKKPVVELKAASALERLIVLCDSAITVVDMVTLEPVPTGGAKLKGVT
AFCINENPVTGDAFCVEMAVVLARRRAVQICTVHEDRVQMLKEVTTPEQPCALSLDGYNI
CLALSTQYMILNYSTGASQDLFPYDCEERKPIVKRIGREEFLLAAPGGLGMFANAEGISQ
RAPVSWSENVIAAAVCFPYVVALDEGFVTVHSMLDQQLKQTLSFRDGQLLQDFEGKVVVA
SSKAVYMLVPLPLERQIQDLLASHRVEEALTLTEAAQRNIPKEKYQILHRRILQQAGFIQ
FGQLQFLEAKEHFRKGQLDVRELISLYPLLLPASSSFTRCHPPLHEFADLNHLTQGDQEK
VQRFKRFLISYLHEVRSSDIANGFHEDVDTALLKLYAETSHESLLDLLASENACLLADSA
PWLEKHHKYYALGLLYHYNGQDAAALQMWVKIVNGDLQDSTRPDLFEYVVDFLSFCSNLD
LVWRHADWALQKDQKIGVQIFTKRPTSEERRGQLNADDVITYLQKHSQALLLYLEHLVLE
KKLQKEKYHTHLAVLYAEKVLGLISRPSTSEEQLSAARQKLQRLLKESNLYRVQLLLGKI
QDSELLLLERATLHGKLEEHDKALHVLVHQLKDSSAAEEYCSWASASQDSSYRQNLFHQL
LSVYLDPDVPGGAQTVAAVDLLNRHAEVFDAVRVLKLLPEDWSLPLLRPFLCGAMRATVH
ARCTSQVALGLARAQNLQLLHDRLKYRGGPVLVSEKKGCQLCHNTFSEPDCACLPGGTPV
HINCVAKKALDLPHENAHHSNHT
NT seq
2592 nt
NT seq
+upstream
nt +downstream
nt
atgagtgtaaaagcttttgatctggttcccgccgtggagcgggagcaggtgatgggcgag
aaggtgcggataaacattgaatgcatagagtgctgcggccaacacctgtacctaggcacc
aatgactgcttcatccatcacttcctcctggaggagcacaccacagctaaaggtaaactg
gccttcaacgctcaaaagctcctccacaaatacctgggcctgaagaagccagtggtggag
ctgaaggctgcctctgctttggagcgcctaatcgtcctctgtgattcggctattacggtt
gtggacatggtaacactggagcctgtgcccactggaggtgcaaagctcaaaggtgtgact
gcgttttgcattaatgagaatccagtgaccggggatgcgttttgtgtggaaatggctgta
gttttggcacgccgacgggccgtccagatttgtacagtccatgaggacagagtgcaaatg
ttaaaggaagtgaccacaccagagcagccctgtgccctgagcctggacgggtacaatatc
tgtttggccctgtctacacagtatatgatcctcaactacagcacaggagcctctcaggat
ctgttcccttatgactgtgaggagaggaagcccattgttaaaaggattggtcgtgaggaa
tttctccttgctgccccaggcggacttgggatgtttgctaatgctgagggcatatcccag
cgtgcaccggtgagctggtccgagaacgtgatcgcggcagctgtgtgtttcccttatgtg
gtcgctctggatgaaggctttgtgaccgttcacagcatgttggaccagcagctgaaacag
acgctttcattcagagatggacaactcttgcaggattttgaaggtaaggtggtggtggcc
tcatcaaaagccgtgtacatgctggtgcctcttcctctggagcgtcagatccaagatcta
ctggcaagccatcgagtggaggaggcactgaccctcacagaggcggcacagagaaacatt
cccaaagaaaaatatcagatattgcacaggagaattcttcaacaagcaggattcatccag
ttcggccagcttcagtttttagaagcaaaagagcattttaggaagggacagcttgacgta
cgggagctgatttctctttatccgcttctcctacctgcctcttcttccttcacacggtgc
catccgccccttcacgagtttgccgacttgaaccacctgacgcaaggagaccaggagaag
gtacaacgcttcaaacgtttcctcatcagctacctgcacgaggtccgcagcagcgacatc
gctaatggtttccatgaagatgtagacactgcattgttgaagctgtacgcagagaccagc
catgagagtcttctggacctgctggcctctgaaaacgcttgtctcctggcagacagtgcc
ccttggctggagaagcatcacaagtattatgctcttggtcttttatatcactacaatgga
caagatgctgctgctttacagatgtgggttaagattgtcaatggagatctccaagactca
acgcgaccagatctgtttgaatatgttgtggattttcttagtttttgctccaaccttgac
cttgtgtggaggcatgcagactgggcactacaaaaagatcaaaagattggcgtccagatc
ttcactaaaaggcctacctcagaagagaggaggggccagctgaatgcagatgacgtgatt
acatatttgcagaagcacagtcaagcccttctgctctatctagaacaccttgtgctagaa
aagaaacttcagaaagagaagtatcacacacatctggctgttctgtatgcagagaaggtg
ctgggtttgatctcacggccttcaacctctgaggaacagctgtcggctgcccgtcagaaa
ctacaacggttgctaaaagagtctaatctgtatagagtccagttactactaggtaaaatt
caagactctgagctgctgctacttgagcgagcgacactacatgggaagttagaggaacac
gacaaggctttacacgtattagtgcaccagctgaaagactcttctgcggctgaggagtac
tgctcctgggcctctgcgtctcaggactcatcctaccgtcagaaccttttccaccaactc
ttgagtgtttacttggacccggatgtacctggaggagcacaaacagtagctgccgttgac
ttgcttaaccgacacgctgaagtgtttgacgcagtgcgtgtgttaaagcttctcccagaa
gactggtctctgccgttactccgtccttttctgtgcggggccatgagggccactgttcac
gcacgctgcacttcacaggtcgcactgggattggctcgagcccaaaacctccagcttctg
catgacaggctgaagtatcgaggtggcccagtattagtgtctgaaaagaagggatgccag
ctgtgccacaacaccttcagtgagcccgactgcgcctgcttgcccggtgggacgcccgtc
cacattaactgtgtcgctaagaaagccctggacttgccacacgaaaatgcccaccacagc
aaccacacatga
DBGET
integrated database retrieval system
