Danio rerio (zebrafish): 565402
Help
Entry
565402 CDS
T01004
Symbol
col11a1a
Name
(RefSeq) collagen, type XI, alpha 1a precursor
KO
K19721
collagen type V/XI/XXIV/XXVII, alpha
Organism
dre
Danio rerio (zebrafish)
Pathway
dre04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
dre00001
]
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
565402 (col11a1a)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
dre00536
]
565402 (col11a1a)
Glycosaminoglycan binding proteins [BR:
dre00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
565402 (col11a1a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
COLFI
Laminin_G_2
Laminin_G_1
Laminin_G_3
Motif
Other DBs
NCBI-GeneID:
565402
NCBI-ProteinID:
NP_001077313
ZFIN:
ZDB-GENE-070209-167
Ensembl:
ENSDARG00000026165
UniProt:
A2RUX5
LinkDB
All DBs
Position
24:complement(28764019..28893251)
Genome browser
AA seq
1736 aa
AA seq
DB search
MERPRWSPMWKTKRWLLDSTVFKLITVSLVLVLQAPHVRAEPVDVLKVLEFPTVPEGVEK
TSGFCTNRRASQPDAAYKISKNAQLSAPTKQLFPDGVFPEDFSILTTIKPKAGIQSFLLS
IYNEKGVQQLGVEVGRSPVFLYEDQEGKPAPEDYPLFRALNLADGKWHRVGISVEKKTVT
IVVDCKKKLTKPLGRSDHASIDTKGITVFGTRILDEESFEGDIQQLLIVADPKAAYDYCE
HYSPDCDVPHKDTLQAQEPGEEYTTPVEYGDLYDYYEGGTPTATDEFSEPQRVKRSVSMK
SKRTKKSPKSFAKPYKYLEPKQAKKLVPKKKRYGYLPPTPRQAILGLGGGAALGQKGEKG
EPAVIEPGMLIEGPSGPPGPAGLPGPPGLQGPPGLAGDPGDRGPPGRAGLPGADGLPGPP
GTMLMLPFRFGGDGEKGPVVSAQEAQAQAILSQARLAMRGPPGPMGLTGRSGPVGLPGPP
GLKGESGDHGPQGPRGIQGPPGQIGKPGKRGRAGADGARGMPGESGSKGDRGFDGLPGLP
GEKGHRGETGPAGPPGPTGEDGPRGEDGEIGPRGLAGESGPRGLLGPRGPPGPPGQPGIA
GVDGPQGPKGNMGPQGEPGPPGQQGIPGGQGLPGPQGPIGPPGEKGPQGRSGLPGLPGAD
GPPGHPGKEGPPGEKGALGQPGPQGPIGYPGPRGVKGADGVRGLKGGKGEKGEDGFPGFK
GDMGLKGDRGELGLAGPRGEDGPEGPKGRAGPNGESGPQGSAGEKGKLGVPGLPGYPGRQ
GPKGSTGFPGFPGANGEKGGRGVAGKAGPRGQRGPTGPRGARGARGPTGKPGPKGTAGND
GPPGPPGERGPQGPQGPVGFPGPKGPPGPPGKDGLPGHPGQRGETGFQGKTGPPGPGGVV
GPQGPTGETGPIGERGHPGPPGPPGEQGLPGAGGKEGAKGDPGPQGSPGKDGPPGLRGFP
GERGLPGVTGPPGLKGAEGPQGPPGPVGSPGERGAAGSAGPIGLPGRTGPQGPPGPAGEK
GAPGERGPLGPAGRDGVQGPVGLPGPAGPQGPPGEDGDKGEVGEPGQKGSKADKGEQGPP
GPPGLQGPIGAPGPAGADGEPGPRGQQGMFGQKGDEGSRGFPGPPGPIGLQGLPGPPGEK
GENGDVGPMGPPGPPGPRGPQGPPGADGPQGPPGGIGGMGAVGEKGEQGEAGNPGPPGEP
GPGGPKGERGEKGEAGPPGAAGPAGPKGPPGDDGPKGNPGPVGFPGDPGPPGEPGVAGID
GGPGEKGEDGESGQPGPPGPSGEAGPPGPPGKRGPPGAHGAEGRQGEKGAKGEAGLEGPP
GKTGPVGPQGPSGKPGPEGLRGIPGPVGEQGLPGAPGQDGPPGPMGPPGLPGLKGDPGSK
GEKGHPGLIGLIGPPGEQGEKGDRGLPGPQGAAGSKGDNGISGASGPIGPPGPPGLPGPQ
GPKGSKGSTGPAGQKGDTGTVGPPGPPGPPGEVIQPLPIHSPKKSRRSIDMQADEAGTML
DYGEGMEDIFSSLNNLKQDIERMKYPMGTQNNPARSCKDLQLAHPEFPDGEYYIDPNQGC
SGDSFKVYCNFTAGGETCIFPDKKSNGVRISSWPKEVPGSWFSEFKRGKILSYVDAEGNS
INMVQMTFLKLLTASARQNLTYSCHQSVAWHDATTDSYDRALHFLGSNDEEISYDNNPYI
KALSDGCAVRKGYGKTVLEINTPKIDQVPIVDVKFTDFGDPNQKFGFEVGPVCFLG
NT seq
5211 nt
NT seq
+upstream
nt +downstream
nt
atggagaggccaaggtggtccccaatgtggaaaacgaaaaggtggcttttggattccact
gttttcaaattgatcacagtttccctcgtcctggttctgcaggctccacatgtcagagca
gaacccgtggatgtcttaaaagtattagaatttcccactgtcccagaaggagtagagaaa
acgtcaggattctgcacaaaccgaagagcatcacagccagacgcggcctacaaaatcagc
aagaatgcccagctcagtgccccgaccaagcagcttttcccagatggcgttttccctgaa
gacttctccatcctaaccacgatcaagcccaaagcagggatccagtccttcctcctgtcc
atctacaatgagaaaggcgtccagcagctgggcgtggaggtgggccgttcacctgtcttc
ctgtacgaggatcaggagggcaaacctgccccggaggattaccctctgttccgcgctctc
aatctggccgacggaaagtggcatcgcgtaggcatcagcgttgagaagaagacagtgact
attgttgtcgactgtaagaagaagctgaccaagccattgggcaggagtgaccatgccagt
atcgacaccaagggtatcaccgtttttggcaccaggatcctggatgaggaatcttttgag
ggtgatatacaacaactgctgattgtggctgaccctaaagcagcttacgactactgtgaa
cattacagcccagactgtgacgtccctcacaaggacacactgcaggcacaggagcccgga
gaggagtacacaactcctgttgaatatggtgatttatatgattattacgagggaggcaca
cccacagcgactgatgagttttctgagccgcagagagtgaaacgtagtgtctccatgaaa
tccaagaggacaaaaaagtcccctaaatcttttgccaaaccctataagtacctggagcca
aaacaggctaaaaagttagtgcctaagaagaagagatacggatacctgccaccaacacca
agacaagccattctagggctgggtggaggtgctgctcttggtcagaaaggtgagaaagga
gagcctgcagtgattgaaccaggaatgctgatcgagggaccttcaggaccacctggacct
gctggtcttccaggtcctccaggtttacaaggcccccctggtttggctggagatcctggt
gataggggtcctccaggccgtgctggtcttcctggagctgatggtttgccaggaccacct
ggaactatgctcatgctgccgtttcgttttggtggtgatggagaaaagggcccagtggtt
tcagctcaggaggctcaggctcaggctattctctctcaggccaggctcgccatgagaggt
ccaccgggtccaatgggtctcactggacgatctggaccagtgggtcttccaggtcctcct
ggactgaagggagaaagtggggatcatggtcctcagggtccaaggggaatccaaggccca
ccagggcaaataggaaaacctggaaagaggggtcgtgctggagctgatggtgcccgagga
atgcctggagagtctggatctaagggtgacagaggtttcgatgggcttccgggtctgcct
ggtgagaaaggacacaggggtgagaccggccctgctggacccccgggaccaactggagag
gatggaccaagaggagaagatggtgagatcggaccaagaggacttgctggtgagagcggg
ccgcgaggtcttctcggcccaagaggccctcctggacctcctggacaacctggcattgct
ggtgttgatggtccgcagggtcccaaaggaaacatggggcctcagggagagccaggtcct
cctggacagcagggaatcccaggaggacagggtcttccaggtccacagggacccatcgga
ccacccggagaaaaaggccctcagggaaggtctggtttgcctggattgcctggtgcagat
gggcctcctggacatcctggtaaagagggtccacctggagagaaaggagctttgggccag
cctggtccccagggccccatcggctatcctggccctcgcggtgtgaagggtgcagatggt
gtccgtggtctaaagggaggcaaaggagagaagggtgaggatggattcccaggtttcaag
ggagacatgggtctcaaaggcgacaggggagagctgggactggctggacccagaggagaa
gatggtccagagggcccgaagggtcgtgcagggcctaacggtgaatctggaccccaggga
tctgccggagaaaagggcaaactaggtgttccaggattgcccggctatccaggacgtcaa
gggccaaagggttcgaccggtttccccggattcccaggagccaatggagagaaaggaggc
aggggggtggctgggaaagctggtccaagaggccaaagaggtccaacgggcccccgtggt
gcacgaggtgcaagaggcccaacaggaaagccaggcccgaagggaacagcaggcaacgac
ggtccacctggcccacccggtgagagaggccctcaaggaccccagggtcctgttggtttc
ccaggaccaaagggtccccctggaccacctggaaaggatgggctgcccggtcaccctggc
cagcggggagagactggattccaaggcaaaactggcccaccaggacctggaggtgttgtt
ggaccacaaggaccgactggagaaaccggtccaattggtgaaagaggacatcctggaccc
cctggtccccccggagagcagggtcttcctggcgctggtggaaaagaaggggcaaaggga
gatccaggtcctcagggcagtccaggaaaagacggtccaccaggactcagagggttccct
ggagaaagaggtcttccaggagtgacgggtccacctggtttgaaaggcgccgagggccct
cagggccctcctggccctgttggttcccctggtgagagaggagcagcaggatctgctggt
cccattggcctgcctggacgtactggacctcagggacccccaggacctgctggagagaag
ggtgcaccgggagagagaggtcctctgggtccagccggtagggatggagttcaaggtcca
gttggtctgccaggtccagcaggacctcagggtccacctggagaagatggtgacaaggga
gaagtgggtgaaccaggccagaagggaagcaaagctgacaaaggagaacagggtccacca
ggtcctcctggtcttcagggacccattggagctcctggacctgctggagcagatggcgag
cccggtcctcgtggacagcagggtatgtttggacagaagggagatgaaggatcccggggc
ttccctggacctcctggtcccatcggtctgcagggtcttccaggaccacctggcgagaaa
ggtgaaaatggagatgttggtcctatgggtcctcctggtccaccaggtcccagaggacct
cagggtcctcctggtgctgatggcccgcaaggtcctcctggtggaataggaggaatggga
gccgtgggtgagaagggtgagcaaggagaagctggcaaccctggacctcctggagagcct
ggacctgggggcccgaaaggtgagagaggagagaaaggtgaagctggtccccctggtgct
gctggacctgcaggtcccaaaggaccccctggagatgatggacccaagggtaaccctggc
cctgttggttttcctggagacccaggtccacctggtgagccaggtgttgctggaatagat
ggaggcccaggagagaagggagaggatggagagtctggtcagcctggaccccctggtcct
tctggagaagctggtccaccaggacctcctggaaaacgaggacccccgggggcgcatgga
gctgaaggcagacaaggagagaagggcgccaagggagaagcaggacttgagggtccacca
ggtaaaactggaccagttggtcctcaaggaccctctggaaagcctggtcctgaaggtctc
agaggaatccccggtccagtcggtgaacaaggacttcctggtgctcctggacaagatggt
ccacctggaccaatgggacctcctggtctgcctggccttaaaggagaccctggctctaag
ggtgagaagggtcaccctggtcttatcggtctcatcgggccgcccggtgaacagggagag
aagggagatcggggtttgcctggacctcagggtgctgccggcagtaagggtgataatggc
atcagtggtgcttctggtccaattggtcctcctggtcctcctggattgcctggtccacaa
gggccaaagggatccaagggttcaactggtcctgctggtcaaaaaggagacactggcacg
gttggacctcctgggcctcctggtcctcctggtgaggtcatccagcctctgcccatccac
agtcccaagaaatcccgtcgctccatcgacatgcaggcggatgaagcaggcaccatgctg
gactatggagagggcatggaggacatattcagctctctcaataatctcaaacaggacatc
gagcgcatgaagtaccccatgggcacgcaaaacaacccagcacgaagctgtaaagacctt
cagctcgctcaccctgaattcccagatggcgaatattacattgatcctaaccagggctgc
tctggagactccttcaaagtgtactgcaacttcacagcaggaggagagacctgcatcttc
cctgataaaaagtcaaatggagtgagaatatcttcatggcccaaagaggtgcccggctcc
tggttcagtgaatttaagcgtggcaaaatactttcatacgtggacgcagaaggcaactcg
ataaacatggtccagatgacgttcctcaaactactgacagcctccgccaggcaaaacctg
acctacagctgccaccagtcagtggcctggcacgacgccactacggacagctatgacaga
gcattacacttcctcggctccaacgacgaggagatctcatacgacaacaacccctacatc
aaggccctgtcagacggctgtgcggtgaggaagggctatggaaagacagtactggagatt
aacactcccaaaattgatcaggttccaatcgtcgacgtgaagttcactgactttggggat
cccaaccagaaatttggatttgaagttggtccagtctgcttccttggctaa
DBGET
integrated database retrieval system
