Danio rerio (zebrafish): 565659
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Entry
565659 CDS
T01004
Symbol
edc4
Name
(RefSeq) enhancer of mRNA-decapping protein 4
KO
K12616
enhancer of mRNA-decapping protein 4
Organism
dre
Danio rerio (zebrafish)
Pathway
dre03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
dre00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
565659 (edc4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dre03019
]
565659 (edc4)
Messenger RNA biogenesis [BR:
dre03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
565659 (edc4)
mRNA degradation factors
5'-3' decay
Decapping complex
565659 (edc4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ge1_WD40
EDC4_C
WD40_WDHD1_1st
WD40
Beta-prop_HPS5
Beta-prop_EDC4L
Beta-prop_EML_2
WD40_CDC20-Fz
Beta-prop_TEP1_2nd
WD40_Prp19
Pdc1_Ge1
WDR55
Motif
Other DBs
NCBI-GeneID:
565659
NCBI-ProteinID:
NP_001038550
ZFIN:
ZDB-GENE-030131-5032
Ensembl:
ENSDARG00000062266
UniProt:
Q1LUT1
LinkDB
All DBs
Position
18:complement(23250233..23302153)
Genome browser
AA seq
1384 aa
AA seq
DB search
MASSSSMDIEGATQHLRDILKLDRPGNSAEASLVESQRKPSFNGELNGVLGSDLMGAAMV
EPTVHNSDKLNGQDTQTICLSGDDGSICVPIRANIVEIVSSRDSSIDSKARGSNKVKIQP
VAKYDWEHKYYYGNLIAVSNTYLAYAIRGANNHSMIRVLHLSSTERSLLKGFTGAVTDLA
FAHLDSTLLGCVDEAGNMFIWQLTSHSSKIQDEVIVHIRRPEDTPLNSNRRLIWCPFIPE
DNDESPEDACQTLALLHEDRAEVWDLDILRSNNSSWPVDATELKEGFITIRGHAARISEG
ALSPDGTVLATASHDGYVKFWQIYIEGQDQPRCLHEWQPHNGQPLSCLLFCDNHKKQDPD
VPFWRFLITGADQNQELKMWCTVSWTCLQTIRFSPDPFNCGVLPSLKASLDLSAEFLILS
DVQRKVLYVMELLQDQEKGRASFTAVSEFLLTHPVLSFGVQDVSRARLRHTEVLPPEEES
ESMTAEGNQGTSESRSGIQIKLYCVHTKSLQDVQIWFQPNQGDSSSLFMPQSGSQDGFSF
SDPLADLNVEAMSSDKESGDSGSQNDLSKILPLPSPADFMSPAPSALPKLMTPDAFMTPS
ASMPASPGSSASSLTIVTAMSSSDSGARGGDDLTQSPKMSVECVNSSFANAGSPRSNSIL
ISGLGENIQVSPPNPPLSLDLQAIDPMVVPQASPTRARSPDVISSASTAMSQDIPEIASE
TLQRGLSGANADSGPILHSDSMASAASILHLLSPRARSSAEHSLLPLELGAASVDGEQRL
SNTPSLLETALSQENAGAAGGSCSDSSVNHAWPAAPDITRETRNSLRDNGLGDCSREEIK
DRHISSPYHRRTYHLTQNDSQDASAEQSDHDDEVASLASSSGNCGPRSSHRLPVKDWKTS
PRSSPKLKRKSKKDEGESSQSRQIESQMSTEVQDELLQMLRSQQREIAELRQNQLDLLQR
VTSHMDAVQSSMMAHIEHAMLAQQEQEQRRMERILVEGQSRNQQLQDQLVQQLVQTLNNS
LCNRLEKVLREEMKKTVPQTISKSLEPVTGQMNSTIAAKLTAVEGALKENVTKVVKSKNT
TDAIGRAAAEAMQGPIQAAYKETFQSIVLPVFERGCQSMFQQINDSFKQGTNEYIQQLET
HIKNRKQRDQDTRDPVIGQLQQMIDSLQSSQDQLASTVTASVSSDVQHQLHMIVGNLQDS
ILTQVQRIVKGEVSLAMKEQQAAVTSSIMQAMRSAAGTPVPSAHLDYQAQQASILQLLQQ
GQLNEAFQQALSAADLNLVLYVCETIDSQQVFGQQPCPLHQAVLLSLIQQLSTNLSTRTE
LKISYLEDAVMNLDHGDPVTRDHMSAVLTQVRQKLFLFLQQDAHSPMSKRARRLMMMLQG
LVNH
NT seq
4155 nt
NT seq
+upstream
nt +downstream
nt
atggcttccagttccagcatggacatagagggtgcgacccagcaccttcgggacatccta
aaactggatcgtccgggaaattcggccgaagcgtctttggtcgagagccagagaaaacca
tctttcaatggagagctgaacggagttctcggatccgatctcatgggagcagcaatggtg
gagccgacggtgcacaactcagacaaacttaatggacaggacacacagaccatctgtctt
tcaggagatgacgggtccatttgtgtcccaatcagagcgaatattgtggaaattgtgtcc
agccgtgactctagtattgacagtaaggctcgtggaagcaacaaggttaaaattcagcca
gtggccaaatatgactgggagcacaagtactactatggcaatttaatagccgtgtccaac
acgtacttggcttatgctatcagaggtgcaaacaatcattcaatgattcgtgtgctgcac
ctgagctctacagagcgctctctgctgaagggcttcaccggggctgtcacagaccttgcc
tttgcccatctggactccaccctgttgggatgtgtggacgaagccggaaacatgttcatt
tggcagcttacaagccacagcagcaaaatacaagacgaagtgattgttcacatccgcaga
cctgaggacactccactaaactctaaccgcagactcatctggtgtcccttcatcccggag
gacaatgacgagagcccagaggatgcatgtcagacattagcattgcttcatgaagacaga
gctgaggtttgggacctcgacatcctccgatcaaataacagctcatggcctgtggacgcc
actgaattgaaagagggtttcatcaccattagagggcatgcagctcgcataagtgaggga
gctctgtcccctgatggtacggttttggccacagctagtcatgatggatatgtcaaattt
tggcaaatttacattgaaggacaggaccaaccccgatgcctgcatgaatggcagccgcat
aatggacagcctctatcttgcctgctgttttgtgacaaccacaagaagcaagatccagac
gttccattctggcgcttcctgattactggagctgatcagaaccaggagctgaagatgtgg
tgcacagtatcatggacctgcctacaaaccatcaggttttctccagatccatttaactgc
ggtgtgctacccagcctgaaggccagtttggacctttctgcagaatttctcattcttagt
gatgttcaaaggaaggtattgtatgtcatggagctgctgcaggatcaagagaaaggccgt
gccagtttcactgcagtctcagagtttctgctcacacaccctgtgctcagcttcggtgtt
caggatgtttctcgtgctcgcctgcgccatactgaggtccttcctcctgaagaagaaagc
gaaagcatgacagcagaaggaaaccagggaacctctgagtccagatcaggaattcagatt
aaactctactgtgtgcatacaaaatcactacaggatgtgcagatctggtttcagcccaat
cagggggactcctcttcactcttcatgcctcagtctggatcacaggatgggttcagtttt
tctgacccgctggctgatctgaatgtggaggcaatgagctctgacaaggagtctggcgat
agtggttcacaaaatgacctgagtaagattctgcctcttccaagtcccgctgacttcatg
agtccagccccatcagccttgcccaaactcatgaccccggatgccttcatgacacccagc
gcctctatgcccgcttctcctggcagcagtgctagcagtctgaccattgtcacggccatg
agcagctcagacagcggtgcaagaggtggagatgatctgactcagagccctaaaatgtct
gttgaatgtgtcaacagcagtttcgccaatgcaggcagtccaagatccaactccatcctc
atctcaggccttggggaaaacatccaggtttcccctccaaaccctcctctctctctggat
ctccaggcaatagatcccatggttgtcccacaggcgtctccaacaagagctcgctcaccg
gatgtcatctcatctgcctctactgcaatgtcccaggacatacctgagattgcctccgag
acgctgcagaggggactgtccggtgccaatgctgattcgggccccatcctgcactctgac
agcatggcatcagccgcatcaattctccacctgctatctccaagggcccggagcagcgct
gagcacagtttgttgcctcttgaattgggtgcagcgtctgtggatggagagcagagactc
agtaacacaccatccctgctggagactgctctctcacaggaaaacgccggagcagccgga
ggatcctgttctgacagcagtgtgaaccacgcatggcctgctgctcctgatatcacgcga
gagacgcgcaacagcctgcgagacaacggtttaggagactgctctagggaggaaataaaa
gacaggcacatttcctccccctaccatagacgcacatatcacctgactcagaacgacagt
caagatgcaagtgcagagcagagtgatcatgacgatgaggttgccagtctggcctcgtcc
tcagggaactgcggccctcgctcctctcacagacttcctgtaaaggactggaaaacatca
ccccgcagctcccctaagctcaagcggaagagcaagaaagatgaaggagagtcctcgcaa
tctagacagattgaaagccagatgagcacagaggtgcaggacgagctcctgcagatgctg
cggagccagcagagggagatcgcagagctccgacagaatcagcttgatcttctgcagaga
gtcactagccacatggacgcagtgcagagctccatcatggctcacatcgagcatgccatg
ttagctcagcaagaacaagaacagagaagaatggagcgaattctggtcgagggtcaaagt
cgaaaccaacagctccaggaccagctagttcagcagctcgtccaaactctgaacaacagt
ctctgcaaccggcttgagaaagttttgcgtgaagaaatgaagaaaaccgtcccgcagacc
atatcgaagagtctcgaacctgtgaccggccagatgaacagcaccattgctgccaagtta
actgcagtagaaggagcactcaaagaaaacgtcaccaaagttgttaagtccaagaacact
acagatgccattggtcgagctgctgcagaggccatgcagggtcctattcaggcagcctac
aaagagaccttccagagcattgtcctgcctgtgtttgagagaggctgtcagtccatgttt
cagcagatcaatgacagcttcaaacagggaaccaacgaatacatccagcagttggagacg
cacatcaaaaacaggaaacaaagagaccaggatacacgggatcctgtcattggccagtta
cagcagatgattgacagtcttcagagttcacaagaccagctggcgtctacagtgacggcc
agcgttagctctgacgtccagcatcagctccacatgattgtcggaaatctgcaggactca
atcctgacacaggtgcagcgtatagtgaagggagaggtgagtttggctatgaaggagcag
caggccgccgtcacctccagtatcatgcaggccatgcgctcagccgcaggaacacccgtc
ccatccgcacatctggactaccaggcccagcaggccagcatattacagctactacagcag
ggccagcttaacgaggccttccagcaggctttatccgcagcagacctgaatctggtcctg
tacgtgtgcgagaccatcgactcccaacaagtgttcggccagcagccctgtccactccac
caggccgtccttctgtccctcatccagcagctctccaccaacctgagcacgcgcacagaa
ctcaagatcagctatctcgaagatgctgtgatgaaccttgaccacggagatcccgtcacc
cgagaccacatgtccgcagtgctgacccaggtacgacagaagctcttcctgttcctgcag
caggacgcccacagccctatgagcaagcgtgcacggcgcctcatgatgatgctgcagggc
ctggtcaaccactag
DBGET
integrated database retrieval system
