KEGG   Danio rerio (zebrafish): 565852
Entry
565852            CDS       T01004                                 
Symbol
vps11
Name
(RefSeq) vacuolar protein sorting-associated protein 11 homolog
  KO
K20179  vacuolar protein sorting-associated protein 11
Organism
dre  Danio rerio (zebrafish)
Pathway
dre04140  Autophagy - animal
dre04142  Lysosome biogenesis
dre04148  Efferocytosis
dre05132  Salmonella infection
Brite
KEGG Orthology (KO) [BR:dre00001]
 09140 Cellular Processes
  09141 Transport and catabolism
   04142 Lysosome biogenesis
    565852 (vps11)
   04140 Autophagy - animal
    565852 (vps11)
   04148 Efferocytosis
    565852 (vps11)
 09160 Human Diseases
  09171 Infectious disease: bacterial
   05132 Salmonella infection
    565852 (vps11)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04131 Membrane trafficking [BR:dre04131]
    565852 (vps11)
Membrane trafficking [BR:dre04131]
 Endosome - Lysosome transport
  Tethering complex
   CORVET complex
    565852 (vps11)
   Hops complex
    565852 (vps11)
SSDB
Motif
Pfam: PEP5_VPS11_N TPR_PEP5_VPS11 VPS11_N VPS11_C VPS18_solenoid_2nd TPR_Vps41 Clathrin Beta-prop_WDR3_1st zf-C3HC4_2 Beta-prop_WDR36-Utp21_1st zf-RING_2 zf-rbx1 zf_RING_Vps8_fungal zf-C3HC4 Beta-prop_IFT122_1st zf-C3H2C3 TPR_GEMI5 WD40_Prp19 zf-ANAPC11 zf-RING_UBOX Beta-prop_EML_2 zf-RING_5 Beta-prop_VPS8 zf-RING_Vps41 ADIP zf_RING_Vps8 Glyco_transf_10 DLP_helical Rab11-FIP3
Other DBs
NCBI-GeneID: 565852
NCBI-ProteinID: NP_001032797
ZFIN: ZDB-GENE-050731-5
Ensembl: ENSDARG00000036338
UniProt: Q4G0A0
LinkDB
Position
10:complement(34676545..34694138)
AA seq 927 aa
MAAFSQWRRFVFFDKETVKDPSENGKNFQLPMGISACDSGRGHIVLGDMDGQIWFLTRSL
QLSSFQAYKLRVTHLYQLKQHNILVSVGQDEPGINPLVKVWNLDKRDSGSPLCTRIFPAI
PGNKPTEVSCLSVHENLNFMAIGFTDGSVVLTKGDITRDRHSKTLSLHEGNCPITGLAFR
QAGKVTHLFVATLEKVQCYTLSVKEYPRVELDTHGCALRCSALTDPSQDSQFIVAGDDCV
YLYQPDERGPCFAFDGHKLLTHWHRGYLLLLTHSNKSPSKSDYGSRQTSPTEKHILTIYD
LDNKFIAYSAVFDDVIDVLAEWGSFYVLTSDRTVYMLQEKDTQTKLEMLFKKNLFVMAIN
LAKSQHLDNDGLSEIFRQYGDHLYVKGDHDGAIQQYIRTIGKLEPSYVIRKFLDAQRIHN
LTAYLQALHRQSLANADHTTLLLNCYTKLKDSSKLEEFIKSNESEVHFDVEIAIKVLRQA
GYHSHAVFLAERHMHHEWYLKIQLEDLKNYQEALRYIGRLPFDQAESNMKRYGKTLMHHV
PESSTILLKRLCTDYHPSKDSTDRDSLDRPVENKANPEEFIPVFANNPRELRLFLEHMIE
VDPFSPEGVYDTLLELRLQDWAHEQDPGKKKVLQEAALSLLRSDNTVFDKALVLCQMHNF
KEGVLYLYEKGKLYQQIMHYHMQNEEYGKVVEACKRYGDSEVCLWEQALGYFARKEENCK
SYISEVLKHIDDNNLMPPLLVVQTLAHNSTASLSVIKDYLINKLERETQQIEEDERKIRQ
YREETAHLRSEIQELKTCAKIFQKTKCSMCNSPLELPSVHFLCGHSFHQHCLESFAESEA
ECPTCTPENRKVMDMLRAQDQKRDLHDHFHRQLRCSNDGFSVIADYFGRGVFNKLTLITD
PPGGKGGAGNLEAEFNRDLLINTKRNV
NT seq 2784 nt   +upstreamnt  +downstreamnt
atggcagcgtttttacagtggagacgatttgtgtttttcgataaagaaactgtgaaggat
ccgagcgaaaatgggaaaaacttccagctaccgatgggcatatcggcctgtgattcaggc
cgaggacacattgtgctcggagatatggatggtcagatctggtttttgacccgctctctc
cagctatcaagcttccaggcatataagctgcgggtgacgcacctgtaccagctcaaacaa
cacaacatcctggtgtcagtggggcaggatgaacctggcatcaatcctctggtgaaggtg
tggaatcttgataagagggacagtggcagtcctctgtgtacccgaatattccctgccatt
cctggaaacaaacccactgaagtgtcttgtctcagcgtacatgaaaaccttaatttcatg
gctataggttttacagatggcagtgttgtgctgacgaagggtgacatcaccagagatcga
cacagcaaaacgctcagcctccatgagggcaactgtccaatcacaggcctggctttcaga
caggctgggaaaatcacacacctgtttgttgccaccttagagaaagtgcagtgttacacg
ttgtcagtgaaagagtatcctcgtgtagaattggacacacacggctgtgctctccgctgt
tctgcgctcactgacccgtcacaggactcgcagtttatagtggctggagatgattgtgtg
tatctgtaccagcctgatgagagaggaccctgcttcgcttttgatgggcataagcttttg
acacactggcacagaggatacctgctgctgctcacacacagtaacaagtcgcccagcaaa
tctgattatggcagcagacagacgtcccctacagaaaagcacatcctgaccatttacgat
ttagacaacaagttcatcgcttacagtgcggtgtttgatgatgtcattgacgttctggct
gaatgggggtctttctacgtcctaacaagtgacaggacggtgtatatgctgcaggagaaa
gacacacagaccaagctggagatgctgtttaagaagaatctgtttgtgatggccattaac
ttggccaaaagtcaacacctggacaatgatggtctgtctgagatattcaggcaatatgga
gaccatctctacgtcaaaggagatcatgatggagctattcaacaatatatccgcaccatt
gggaagctcgaaccatcctatgttatccgcaagtttttggatgcacagagaatacacaac
ctaaccgcatacctgcaggcccttcacaggcagtcactggccaacgctgatcacactaca
ctactgctcaactgctacaccaaactgaaggacagctccaagctggaggagttcataaag
agcaatgagagcgaggtgcattttgatgttgaaattgccatcaaagtgttacgccaggct
ggttatcacagtcacgccgtgtttctggcagagagacacatgcaccatgaatggtatctg
aagatccagctagaggatttgaagaattatcaagaggctttgcgctacatcggtaggttg
ccatttgatcaggctgaaagtaacatgaagcgttatggtaaaactcttatgcaccatgtt
cccgagagctccaccatcctcttaaagcgcctctgcaccgactatcaccccagcaaagac
tccaccgaccgggacagtctggacaggcctgtggaaaacaaggccaatccagaggagttc
atcccagtgtttgccaataacccgcgagagctgcgattgtttctggagcacatgatcgag
gtggacccgttctctcctgaaggagtttatgacactctgctagagctcagactgcaggac
tgggcacatgagcaggacccagggaagaaaaaagtcctgcaggaggcagcactctccctt
ctgaggagcgacaacactgtgtttgacaaggccctcgtgctctgccagatgcacaacttt
aaagaaggagtgctgtatttgtatgaaaagggcaaactgtatcagcagatcatgcattac
cacatgcagaatgaggagtatgggaaagtggtggaggcctgtaagcgctatggggacagc
gaagtgtgcttgtgggagcaggcactgggctatttcgcacgcaaagaagaaaactgcaag
tcctacattagtgaagtcttgaagcacatcgacgacaataacctgatgcctccgcttctg
gtggtgcagactttggcccataattccacagcatctttatcagtcatcaaagactacctg
attaataaactggagagggagacccagcagattgaggaagacgaaaggaagattcgccag
tatagagaagagacggctcatttacggtctgagatacaagaacttaaaacttgtgcaaag
atctttcagaagaccaagtgcagcatgtgcaacagcccgctcgagctgccgtctgtgcac
ttcctgtgtggccactctttccatcaacactgcttagagagcttcgctgagagtgaggca
gagtgtcccacctgcacccctgagaacaggaaggtcatggacatgttgcgtgcgcaggat
cagaaacgagatctgcatgaccattttcacagacagttgagatgctctaacgacggcttc
tcagtcatcgctgactactttggccgtggagtgttcaacaaactcactctgataacggat
cctcccggaggaaagggtggagctgggaatctggaggctgaattcaacagagatctgctc
attaacaccaagagaaacgtttga

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