Danio rerio (zebrafish): 566947
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Entry
566947 CDS
T01004
Symbol
ddx3xa
Name
(RefSeq) DEAD-box helicase 3 X-linked a
KO
K11594
ATP-dependent RNA helicase DDX3X [EC:
5.6.2.7
]
Organism
dre
Danio rerio (zebrafish)
Pathway
dre04622
RIG-I-like receptor signaling pathway
Brite
KEGG Orthology (KO) [BR:
dre00001
]
09150 Organismal Systems
09151 Immune system
04622 RIG-I-like receptor signaling pathway
566947 (ddx3xa)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dre03019
]
566947 (ddx3xa)
03041 Spliceosome [BR:
dre03041
]
566947 (ddx3xa)
03036 Chromosome and associated proteins [BR:
dre03036
]
566947 (ddx3xa)
Enzymes [BR:
dre01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
566947 (ddx3xa)
Messenger RNA biogenesis [BR:
dre03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
566947 (ddx3xa)
mRNA cycle factors
Common to processing body (P body) and stress granule
566947 (ddx3xa)
Spliceosome [BR:
dre03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
566947 (ddx3xa)
Chromosome and associated proteins [BR:
dre03036
]
Eukaryotic type
Gene silencing
RISC (RNA-induced silencing complex)
566947 (ddx3xa)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Utp25_C
Motif
Other DBs
NCBI-GeneID:
566947
NCBI-ProteinID:
NP_001119895
ZFIN:
ZDB-GENE-030131-1565
Ensembl:
ENSDARG00000020573
UniProt:
B0S6P6
LinkDB
All DBs
Position
9:33334495..33354738
Genome browser
AA seq
709 aa
AA seq
DB search
MSHVVVDGSHGLDQQLAVLDLNSADGQGVGTGRRYIPPHLRNKDASKNDSPGWDGSRTNG
FVNGYHDSRMNGTANFARGPLRNDRGGRGGFRGNRNGASFNQPVHNAGYGTYENKDGGWN
SVVNRDAYASFGGRSDRGKSAFFNDRGASSRGRYERGGFGGGTGGNSRWVEESRDEEDWS
KPMPPNERLEHELFSASNTGINFEKYDDIPVEATGTNSPGHIESFHDVDMGEIIMGNITL
SRYTRPTPVQKYAIPIIKTKRDLMACAQTGSGKTAAFLLPVLSQIYSEGPGEALQATKAS
TQQENGKYVRRKQYPISLVLAPTRELALQIYDEARKFAYRSRVRPCVVYGGADIGQQIRD
LERGCHLLVATPGRLVDMMERGKIGLDYCKYLVLDEADRMLDMGFEPQIRRIVEQDTMPP
KGSRQTMMFSATFPKEIQILARDFLEEYIFLAVGRVGSTSENITQKVVWVEENDKRSFLL
DLLNATGKDSLTLVFVETKKGADALEDFLYREGYACTSIHGDRSQRDREEALHQFRSGRC
PIMVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFYNDKNSNI
TKDLLDILVEAKQEVPSWLENLAYEHQHKSTNRGRPKRFSGGFGARDYRQMPGGGNTFGN
RGARNTGGHGGNRGFGGNKGGFGSFGGDSYGGTYGNYGGNYTQVDWWGN
NT seq
2130 nt
NT seq
+upstream
nt +downstream
nt
atgagtcatgtggtcgtcgacggttcacacggtctagatcagcagcttgctgtcttagac
ttaaactcagctgatggacagggtgttggcactggccggcgttacattcctcctcatttg
agaaacaaagacgcatcaaaaaatgattctccaggatgggatggtagtcgtaccaatggt
tttgtcaatgggtaccatgacagtcgtatgaatgggactgcaaacttcgcacgtgggcct
cttcgcaatgaccgaggaggacgtggtggctttcgtggaaacagaaatggtgcttccttt
aaccagccagtgcataatgcaggttatgggacgtatgaaaacaaagatggaggctggaac
tctgtggtgaacagagatgcctacgcaagcttcggtgggcgatctgacagaggaaagtct
gcattcttcaatgacagaggagctagctcaagaggaaggtatgagcgtggaggctttgga
ggaggaacaggaggaaacagtcgttgggttgaagagtccagagatgaagaggactggtca
aagccaatgccccccaatgagcgtctggaacatgagctgttctctgcgagcaacacaggg
attaactttgagaagtatgatgacattcctgtggaggccactggaacaaactctcctggg
catattgagagtttccatgatgtagacatgggtgagatcattatgggcaacatcaccctg
agccgctacacgcgtcctactcctgttcaaaagtatgcaattcccatcatcaagaccaag
agggacctgatggcctgtgcacagacaggctcggggaagactgcggccttcttgcttcct
gtgctgagtcagatctactctgaaggacctggagaagcactgcaagccaccaaagccagc
acccagcaggagaatggaaagtatgttcgtcgtaagcagtatcccatttctcttgtcctg
gctccaactagagaacttgcccttcagatttatgatgaggccagaaagtttgcttaccgc
tccagagtgcgcccatgtgtagtgtacggtggtgcagatattggccagcagatccgtgat
ttggaaagaggctgtcatctgctagtggccacccctggtcgtttggtagacatgatggag
cggggaaagattggcctggattactgcaaatatctggtgttggatgaagctgacagaatg
cttgatatgggtttcgaacctcaaatcagacgtattgtggaacaggacacaatgcctcct
aaaggttctcgccagaccatgatgttcagtgccaccttcccgaaagagattcagattctg
gcccgtgactttcttgaggagtacatcttccttgctgtgggccgtgtgggctccacctca
gaaaacatcactcagaaggtggtttgggtagaagagaacgacaagcgctctttcctcctt
gacctgctcaatgccacaggcaaggattctctcacacttgtgtttgtggagactaagaag
ggagcagatgctcttgaggacttcctctaccgtgagggctatgcctgcaccagtattcat
ggtgatcgttctcagcgtgatcgtgaggaggcgcttcaccagtttcgttctggacgatgc
cccatcatggttgccactgctgtggctgcacgtggccttgacatctccaacgtaaaacac
gtcatcaactttgacttgcccagtgacattgaggagtacgtccatcgcattggtcgtaca
ggccgcgtgggaaatcttgggctggccacatccttctacaatgataagaacagcaacatc
actaaagatttgctagacatcctggtggaggccaaacaggaggttccttcctggcttgag
aacctcgcctacgagcaccagcacaaaagcaccaaccgtggacgtcccaaaaggttttct
ggtggttttggggccagagattaccgccagatgcctgggggaggcaacacttttggcaac
cgtggtgctcgcaacactggcggccatggaggaaacagaggttttggaggcaataagggt
ggctttgggagtttcggtggtgacagctatgggggcacctatggaaactatggaggaaac
tacactcaggtggactggtggggcaactaa
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