Danio rerio (zebrafish): 567476
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Entry
567476 CDS
T01004
Symbol
smarcc2
Name
(RefSeq) SWI/SNF complex subunit SMARCC2
KO
K11649
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily C
Organism
dre
Danio rerio (zebrafish)
Pathway
dre03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
dre00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
567476 (smarcc2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
dre03021
]
567476 (smarcc2)
03036 Chromosome and associated proteins [BR:
dre03036
]
567476 (smarcc2)
Transcription machinery [BR:
dre03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
567476 (smarcc2)
Chromosome and associated proteins [BR:
dre03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
567476 (smarcc2)
PBAF complex
567476 (smarcc2)
GBAF(ncBAF) complex
567476 (smarcc2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SWIRM-assoc_2
SWIRM-assoc_1
SWIRM-assoc_3
SWIRM
Myb_DNA-binding
Myb_DNA-bind_6
Motif
Other DBs
NCBI-GeneID:
567476
NCBI-ProteinID:
XP_021330286
ZFIN:
ZDB-GENE-100728-1
Ensembl:
ENSDARG00000077946
UniProt:
A0A8M9Q5E9
LinkDB
All DBs
Position
6:39836470..39866673
Genome browser
AA seq
1036 aa
AA seq
DB search
MAVRKKDGGPNVKYFEASDTVSQFDNVRVWLGKNYKKYIQAEPPTNKSLSSLVVQLLQFQ
EEVFGRHVSNPPLTKLPVKCFLDFKAGGALCHILAAAYKFKSDQGWRRFDFQNPSRMDRN
VEMFMTIEKSLVQNNCLSRPVIYLSSEIEPKLLGKLKDIIKRHQGSVTEDKLSSSHVVVP
IPASLEDEEWVRPVMKRDKQMLLHWGYWPDSYDTWISASEVEAAVEDPPAAEKPRKVHAK
WILDLDQFNEWMNEEDYEVGEGGPRRKRISAKTLTDEVSAPDERRDKKPSGAKKRKRSPS
PSPTPPPQESKKKNTKKGPTTPYTKSKRGQREEEQEDLTKELDEPSPVPAVEEATLPKTV
TKKDSDSTPVKGGTMTDLDEQEDESMETVGKEEEEGSPSVKGEPVKGSDLHEDNVTEQTH
HIIIPSYAAWFDYNSVHAIERRALPEFFNGKNKSKTPEIYLAYRNFMIDTYRLNPQEYLT
STACRRNLAGDVCAIMRVHAFLEQWGLINYQVDSESRPTPMGPPPTSHFHVLADTPSSLV
PLQPKASQTSSSQQMLSFPEKVKDKPADLQNFGLRTDVYSKKSGPAKNKNAASATREWTD
QETLLLLEGLEMYKDDWNKVSEHVGSRTQDECILHFLRLPIEDPYLEDSSASLGPLAYQP
VPFSQAGNPVMSTVAFLASVVDPRVASAAAKSALEEFSRMKEEVPAALVEAHVRRVEEAA
RASGRQDPLYGLEGSGIAGTGLEDSDKPSDDGGEENKSSEGQPSQEKRDSKESKDGASEE
EEKQGENGKKEEERAREVETERETEKTDSEMADGEKEKERKEGSEEAQRDGETEGEKKAK
VERDVGEGNLATAAASALAAAAVKAKHLAAVEERKIKSLVALLVETQMKKLEIKLRHFEE
LETIMDREREALEYQRQQLLADRQSFHMEQLKYAEMRARQQHFQQIQHQHHSNQPGSQSA
TAPPVPHQPVATASAPPPTPSPAPLTATNTHSEAPPPPAAHSSPPNNTQAGAAHDSSTTP
LAGDSLYPTAPVPPSQ
NT seq
3111 nt
NT seq
+upstream
nt +downstream
nt
atggcggtacggaagaaagacggcggcccgaatgtaaaatatttcgaagcgtctgatacc
gtctcgcagttcgacaatgtccgggtttggctgggcaagaattataaaaagtatattcaa
gccgagccccccaccaataaatctttgtcgagtctggtggttcaactgcttcagtttcag
gaggaagtgtttggccgacatgtcagcaaccctcctctcactaaactaccggtgaagtgt
tttttggatttcaaagctggaggagctctgtgtcatattctggctgctgcctacaagttc
aagagtgatcaaggatggaggagatttgactttcagaacccttcgagaatggaccgcaat
gttgaaatgttcatgactatagaaaagtctttggtacagaataactgtttgtcccgacct
gtgatttacctgagttcagagatagagcccaaactactaggaaaactgaaggacatcatc
aaacgacaccagggctctgtgaccgaagataagctttccagctctcatgtagttgtgcct
attcctgccagtctggaggatgaagagtgggtccgtcctgtaatgaagagagacaaacaa
atgctgctacattggggttactggcctgatagttatgacacatggatatcagccagtgag
gtagaggctgctgtggaggatccacccgctgctgaaaaacccaggaaggtccatgccaag
tggattctggacctggatcagtttaatgagtggatgaatgaggaagactatgaagtggga
gagggagggccgaggaggaagaggatttcagcaaagactcttacagatgaagtgagcgct
cctgatgaaagaagggataaaaaacccagcggtgccaaaaagaggaaacgctccccttct
ccgtcccctacccctccaccacaggagagcaagaaaaaaaacaccaagaaaggtcccact
actccctacactaaatccaaacgaggacagagagaagaagagcaagaagatctgactaaa
gagttggatgaaccctcacctgtgcctgcagtggaggaagctacactacctaaaacagtg
actaagaaggactcagattccactccagtgaaaggaggcactatgactgaccttgatgaa
caagaggacgaatcaatggagactgttggaaaggaggaagaagaaggatccccgagtgtg
aaaggagaaccagtgaagggctcagaccttcatgaagataatgtcactgaacagacccat
catattattatccctagttatgctgcttggttcgactataacagtgtccatgctatagag
cgcagagcactgcccgagtttttcaatgggaagaacaagtcgaagactccagaaatttat
ttggcgtatcgtaacttcatgatcgacacatacagactgaacccacaagaatatttgacc
tccacggcttgccgtaggaacctcgctggagacgtttgtgcaattatgagagtccatgct
tttctggagcagtggggcctgattaattatcaggtggattcagagagtcgacccactccg
atgggacctccacccacttcacactttcacgttctagcagatactccatcaagtcttgtg
ccactacagccgaaagcatctcagacttcatcctctcagcagatgctgtcattcccggag
aaagtgaaggacaaaccagccgacttgcagaactttgggttgaggacagatgtgtacagt
aagaagagcggtccagctaagaataaaaatgctgccagtgccactcgggaatggacggac
caggagacgctgctactgctggagggtctagagatgtataaagatgactggaataaagta
tctgagcacgtgggcagccgcacacaggatgagtgtattctccacttcctgcgtctgccg
attgaagacccttacctggaggacagctccgcgtctctgggtccacttgcatatcagcct
gtaccattcagtcaagcgggaaaccctgtgatgagcactgtggccttcctggcctctgtg
gtggaccctcgagtagcatccgccgcagctaaatctgcacttgaggagttctctcgaatg
aaggaggaggttccagctgcgttggtggaggctcatgtgcgtcgggtggaggaggcggcc
cgggccagcgggaggcaagatcctctttacggcctggagggcagcggcatcgcaggaacc
ggcctggaagattctgacaaaccctctgacgatggaggtgaagagaataagagcagcgaa
ggtcagcccagtcaagagaagagagacagtaaggaaagtaaagatggagccagtgaggaa
gaagaaaaacaaggagaaaacggcaaaaaagaggaagagagagcgagagaagtggagacg
gagagggaaacagagaaaacagactcagaaatggccgatggtgagaaggagaaagagcgg
aaggagggatcagaagaggctcagcgggatggagagactgaaggagagaagaaagccaag
gtggagagagatgtaggagagggaaacctggccaccgccgctgcttctgcactcgccgct
gccgccgtcaaagctaagcacttggctgcggtggaggagaggaagatcaagtctctggtg
gctctgctggtggagacccagatgaagaaactggagatcaaactcagacactttgaagag
ctggaaaccatcatggacagagagagggaagccctggagtaccagaggcagcagcttctt
gcggaccgtcagtcatttcatatggagcagcttaagtatgctgagatgagagcccgacag
cagcacttccaacagatccagcaccagcatcacagcaatcagcctggcagtcagtctgca
actgctccacctgtgccccaccagcccgtcgccaccgcctcggctccacctccaacacca
agccccgcccccctgactgccaccaatacccatagtgaagctcctcctccacctgctgct
cacagttcacctcctaacaacacacaggctggagcagcacatgattccagcaccactcca
ctagcaggggattctctgtatccaacagccccggtgcctccatcacagtaa
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