Danio rerio (zebrafish): 568554
Help
Entry
568554 CDS
T01004
Symbol
kcnma1a
Name
(RefSeq) calcium-activated potassium channel subunit alpha-1a
KO
K04936
potassium large conductance calcium-activated channel subfamily M alpha member 1
Organism
dre
Danio rerio (zebrafish)
Pathway
dre04270
Vascular smooth muscle contraction
Brite
KEGG Orthology (KO) [BR:
dre00001
]
09150 Organismal Systems
09153 Circulatory system
04270 Vascular smooth muscle contraction
568554 (kcnma1a)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
dre04040
]
568554 (kcnma1a)
Ion channels [BR:
dre04040
]
Voltage-gated cation channels
Potassium channel, calcium- and sodium-activated (KCa/KNa)
568554 (kcnma1a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Slo-like_RCK
Slowpoke_C
BK_channel_a
Ion_trans
Ion_trans_2
TrkA_N
Motif
Other DBs
NCBI-GeneID:
568554
NCBI-ProteinID:
NP_001139072
ZFIN:
ZDB-GENE-070202-9
Ensembl:
ENSDARG00000079840
UniProt:
B7ZC96
Structure
PDB
LinkDB
All DBs
Position
13:16521969..16889105
Genome browser
AA seq
1184 aa
AA seq
DB search
MSNNINFNKNPDSSVSISKMDVIIPFTPDVPCDNNGQRMWWAFLASSMVTFFGGLFIILL
WRTLKYLWTVCCHCNIKNKEAQKVNNPITIQADGTTKTGNEKEEAPASEVGWMTSVKDWA
GVMISAQTLTGRVLVVLVFALSIGALGIYFIDSSDPIESCQNFYKDFTLQIDMAFNVFFL
LYFGLRFIAANDKLWFWLEVNSVVDFFTVPPVFVSVYLNRSWLGLRFLRALRLIQFSEIL
QFLNILKTSNSIKLVNLCSIFISTWLTAAGFIHLVENSGDPWENFQNSQPLSYWECVYLL
MVTMSTVGYGDVYARTTLGRLFMVFFILGGLAMFASYVPEIIELIGNRKKYGGSYSAVNG
RKHIVVCGHITLESVSNFLKDFLHKDRDDVNVEIVFLHNISPNLELEALFKRHFTQVEFY
QGSVLNPHDLARVKIESADACLILANKYCADPDAEDASNIMRVISIKNYHPKIRIITQML
QYHNKAHLLNIPSWNWKEGDDAICLAELKAGFIAQSCLAQGLSTMLANLFSMRSYIKIEE
DTWQKYYLEGVANEMYTEYLSSAFVGLSFPTVCELCYVKLKLLLIAIEYKSEQRESSILI
NPGNHVKMQEGTLGFFIASDAKEVKRAFFYCKACHDDITDPKRIKKCGCKRIEDEHPSTL
SPKKKQRNGGMRNSPNCSPKMMRHDPLLIPGNEQIESMDANVKRYDSTGMFHWCPSKEIE
KVILTRSEASMTVLSGHVVVCIFGDVTSALVGLRNLVMPLRASNFHYHELKPIVFVGSLD
YLRREWETLHNFPKVFILPGTPLSRADLRAVNINLCDMCVILSANQNNIDDASLQDKECI
LASLNIKSMQFDDSIGVLQANSQGFTPPGMDRSSPDNSPVHGLVRQASVTTGSNIPIITE
LVNDSNVQFLDQDDDDDPDTELYLTQPFACGTAFAVSVLDSLMSATYFNDNILTLIRTLV
TGGATPELEALLAEENALRGGYSTPQTLANRDRCRVAQLALYDGPFADLGDGGCYGDLFC
KALKTYNMLCFGIYRLRDAHLGAPSQCTKRYVITNPPYEFEMVPTDLIFCLMQFDHNAGQ
SRASLSHSSHSSHSSSKKSSSVHSIPATNRQNRSSKAREARDKQNATRMNRMGPEKRWFT
DEAENAYPRNIQIKPMSTHMANQVNQYKSTSSLIPPIREVEDEC
NT seq
3555 nt
NT seq
+upstream
nt +downstream
nt
atgagtaataatatcaattttaataaaaatccggactcttctgtctctatatcgaagatg
gacgtgatcatcccgttcacaccagacgtaccctgtgacaacaatggtcagcgcatgtgg
tgggctttcctcgcctcatctatggtgacgttcttcgggggtctcttcatcatcctcctg
tggaggaccctcaagtacctgtggactgtctgctgccattgcaacatcaaaaacaaggag
gcacagaaggtgaataaccctattactattcaggctgatggcacaacaaagactgggaat
gaaaaagaagaagccccagccagtgaagtgggctggatgacctcagtcaaagactgggcc
ggggtcatgatctcagcacagaccctcaccggcagagttttggtggtgttggtctttgca
ctcagcatcggagctctgggaatatacttcatagactcttcggatcctatagaatcctgt
cagaatttctacaaagacttcacgttacaaattgacatggcattcaacgtgttcttctta
ctctactttggtctgcgcttcatagcagccaatgataagctgtggttctggctggaggtc
aactcagtggtggacttcttcaccgtgcctcccgtgtttgtgtcagtgtacctgaacagg
agttggcttggtctgaggtttctaagagccttgagattgatacagttctcagaaatttta
cagtttttgaatatcttaaaaacaagtaattccatcaagctggtgaacctgtgttccatc
ttcataagcacatggctcactgctgcaggattcattcatctggtggaaaactcaggggat
ccatgggaaaacttccaaaactctcaaccgctctcatattgggaatgtgtgtacttatta
atggtcaccatgtccacggtgggatatggggacgtctatgcaagaaccactcttggacgc
cttttcatggtcttcttcattctcggtggtctggccatgtttgccagctacgtccctgaa
atcatagagttaataggaaaccgcaagaaatatggtggttcctatagtgcggtaaatggc
agaaagcatattgtggtctgtggtcatatcacgctcgaaagtgtttccaacttccttaaa
gacttcctacacaaggacagggatgatgtcaatgtagaaattgtttttcttcataatatt
tcccctaatcttgagctggaagccttgttcaaacgtcacttcactcaggtggaattctat
caaggatcggtcctcaacccacatgatctagcaagagtgaagattgagtcggcggacgct
tgcttgattcttgcaaacaaatactgtgcagaccccgatgctgaggatgcctcaaatatc
atgagagtgatatctatcaagaactaccatccaaagatcagaataataacacaaatgttg
cagtaccacaacaaggcccatctgctaaacattcccagctggaactggaaggagggagat
gatgcgatttgcctggccgagttgaaggcaggcttcatagcccagagctgcctggcacag
ggcctgtccaccatgctcgccaacctcttctccatgaggtcatacatcaagattgaagaa
gacacatggcagaagtattatctggaaggagtagccaatgaaatgtacactgagtacctg
tctagtgcctttgtcggcctttcatttcctacagtttgtgagctgtgctacgtgaagctc
aagttgctgttgatcgctattgagtacaagtcagagcaaagggaaagcagtattctgatc
aacccgggaaatcacgttaaaatgcaggaggggacactgggattctttattgccagtgat
gccaaagaagtgaaaagagcatttttctactgcaaagcatgtcatgatgacatcacagat
cccaaacggattaaaaagtgtggctgcaagagaatcgaagatgagcatccgtcaacactg
tcacccaaaaagaagcagcgcaacggaggcatgcgaaattcacccaactgctcgcccaaa
atgatgaggcatgatcctctactcattccaggaaatgagcagattgagagcatggatgct
aatgtcaaacgatacgactctactggaatgtttcactggtgtccatccaaagaaatcgag
aaggtcattctgacacgcagcgaggcctcaatgacggttttaagtggacatgtcgtagtc
tgcatatttggagatgtcacgtcagctttagtggggcttcgaaacttagtcatgcctttg
agagcaagcaacttccattaccatgagctaaagcccattgtgtttgtgggctcgttagat
tatctgcgaagagagtgggaaacccttcacaacttccccaaagtcttcatcttacctggt
acgccattaagtcgagctgatttaagggccgtcaacatcaacctctgcgacatgtgcgtt
atcctgtcagccaatcagaacaatatcgacgatgcttcactgcaggacaaggaatgcatc
ttggcatctcttaacatcaaatctatgcagtttgatgacagcattggggtcttgcaggct
aattcccaaggtttcacacctccagggatggataggtcatctcctgataacagtcccgtg
cacggcttagtgcggcaggcatccgtcaccaccggatcaaacatccccatcataactgaa
ctggtgaacgactccaacgttcagtttttggaccaagacgacgatgacgacccagacact
gagctctacctgacccagccgttcgcctgtggtaccgcattcgccgtcagcgtgttggac
tccctgatgagtgcgacatacttcaatgataatatcctcaccctgatccggacgctggtc
acgggaggcgccacgccggagctggaggccctgttggctgaggagaacgctctgagaggt
ggctacagcacgccgcagacgctggctaacagggacaggtgtcgggtcgcccagctggcc
ctctacgatgggcccttcgcagacttgggggacggaggttgctatggagacttgttctgt
aaagcattaaaaacctacaacatgctgtgctttggaatctatagattgcgagatgcacat
ttaggtgcaccaagccagtgcacaaaaagatatgtcatcacaaacccgccttatgagttt
gagatggtgcccacggacctgatcttctgtctgatgcagttcgaccacaacgcgggccag
tcccgagcgagcctgtcccactcctcccattcgtcccattcctccagcaagaagagctcg
tctgttcactccatcccagccaccaaccggcagaaccgcagcagcaaagcacgtgaagcc
cgtgacaaacagaatgcaacaaggatgaatagaatgggcccagaaaagagatggtttaca
gatgaagcagaaaacgcatacccaaggaacattcaaatcaagcctatgagcactcacatg
gccaaccaagtcaatcagtacaaatccactagcagtctgattccacctatccgagaagtc
gaagacgaatgctga
DBGET
integrated database retrieval system
