Danio rerio (zebrafish): 568568
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Entry
568568 CDS
T01004
Symbol
rc3h1a
Name
(RefSeq) roquin-1a
KO
K15690
RING finger and CCCH-type zinc finger domain-containing protein
Organism
dre
Danio rerio (zebrafish)
Brite
KEGG Orthology (KO) [BR:
dre00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
dre03000
]
568568 (rc3h1a)
04121 Ubiquitin system [BR:
dre04121
]
568568 (rc3h1a)
Transcription factors [BR:
dre03000
]
Eukaryotic type
Zinc finger
Cys3His zinc factors
568568 (rc3h1a)
Ubiquitin system [BR:
dre04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
568568 (rc3h1a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Roquin_1_2-like_ROQ
ROQ_II
zf-RING_5
zf-RING_UBOX
zf-RING_2
zf-C3HC4_4
zf-C3HC4_3
zf-CCCH
Prok-RING_4
zf-C3HC4
zf-CCCH_4
zf_CCCH_4
Baculo_IE-1
FYVE
zf-RING_4
zf-C3HC4_2
Motif
Other DBs
NCBI-GeneID:
568568
NCBI-ProteinID:
NP_001076328
ZFIN:
ZDB-GENE-050208-702
Ensembl:
ENSDARG00000062550
UniProt:
B3DIY0
LinkDB
All DBs
Position
22:15693411..15742317
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AA seq
1078 aa
AA seq
DB search
MPVQAPQWTEFLLCPICTQTFEENHRKPISLGCGHTVCKMCLNKLHRKACPFDQTTISTD
IEQLPVNTALLQLVSGQVPKAPPVTLLTAAEDVKHYEESRTCVEDLALYLKPLSNTRGAG
LNGAAQSVLSRPMQRKLVTLVHCQLVEEEGRIRAMRAARSLGERTVTELILQHQNPQQLS
SNLWAAVRARGCQFLGPAMQEEALKLVLLALEDGSALSRKVLVLFVVQRLEPRFPQASKT
SIGHVVQLLYRASCFKVTKRDEDSSLMQLKEEFRTYEALRREHDSQIVQIAMEGGLRIAP
DQWSSLLYGDQSHKSHMQSIIDKLQTPASFAQSVQELTIALQRTGDPANLNRLRPHLELL
ADIDPSPDAPAPTWEQLAKGLEAVRTVVHGLVDFIQNHSKKGGDQQQPPQHSKYKTYMCR
DMKQKGGCPRGASCTFAHSQDELEKYRKMNKRVGMRRQLSQSLTQLNELDLGLLSDDGPP
MEGLPRKSSSITNGILAAGPGSALAHLVSRGSDPSYEPTHKPTKMDSGSLSAPGSPPDSL
ESIPKSSMLMNAQSRIAGDGAVGQKHLSAVPRVPQMYSSHQPDLYFPETRAPPPPSASYE
SSQYATAGNPYPHHHRYPRHPAPDPGMSPYPDSYPNPYVSKHQYANPSAHYGYPSRHDNR
CHSPYAHPQTFAPREELVRRSPDIPPPLQPQNTSTSYLPESAQERYTNDTYNHPSQIRNY
HRNAYPRTQHSLDYLHRRRKEIMAQLEERKVVSPPPFASSHSYDSGYPQDMRAQRDYIEN
SHGFGHFREPDYTASYSPWLCDTIGSYIGSKDMKSKEGMHSMDAQNVEKGKSLRVHGLEL
QRRATEVKDDDPIIPFGSLPTVSRFGAISRTSKPGFPPNSPMPPLPNSAKHTADYTYANH
SGWSGDSYQSHQTSQGHFSERSSLSPAVQAREQLRMELQQVNQQISQQTHPRLENSSSVM
SQASRVDWSSGNLSSEQLSFELHQVEKEINKRSQEMENHDGKYKRISVENGPDEHLLQRD
EHQLSLSEGSNGSMGLVQDCGLVSSSMSSLTSKTSSLSLSSEQVASSPDLPKNGVVHS
NT seq
3237 nt
NT seq
+upstream
nt +downstream
nt
atgcccgttcaagctccgcaatggacagagtttctgttgtgtcccatctgcacgcaaacc
ttcgaggaaaaccaccgcaaacccatcagcctgggctgcggacacactgtctgcaaaatg
tgcctgaacaaactccaccgcaaagcctgtccgttcgaccagaccaccatcagcacagac
atcgagcaactgcccgtcaacactgcgctgctgcagctcgtcagtggacaggtacccaaa
gctcctcccgtgacgttactgacagctgcagaggacgtcaaacactatgaggagtcacgc
acgtgtgtggaggatctggcgctctatctcaaacccctcagcaacaccagaggtgcaggt
ctgaatggcgcagctcagagtgtcctcagcaggcccatgcagaggaagctggtgacgctg
gtgcactgccagctggtggaagaggagggccgcatccgggccatgagggcagcccgttcc
ctgggcgaacgcacagtcacagagctcattctccagcatcagaacccccagcagctctcc
tccaacctatgggccgccgtcagagccagaggctgccagtttcttggccctgccatgcag
gaagaagcattaaagctggttctgctcgctctggaggatggttcggccctttcaaggaaa
gttctggtcctgtttgtggtccagagattggaaccacgctttcctcaggcctccaaaacc
agcataggacacgtggtgcagctcctctacagggcctcctgctttaaggtgaccaagcgt
gatgaggactcctccttgatgcagctgaaggaagagtttcgcacatatgaggctcttcgt
agagaacacgactctcagatcgtccagatcgcaatggagggcggcctgcgcattgcccca
gaccagtggtcttctctcctgtatggcgaccagtcccacaagtcccacatgcagtctatt
attgacaagcttcagactccagcatctttcgctcagagcgtgcaggagcttaccatcgcc
ctgcagagaaccggagatcctgccaatctgaaccgcctcaggcctcatttggagctgttg
gccgacatcgaccccagtccagatgcccctgcgcccacatgggagcagttggctaaaggg
ttggaggcggtacggactgttgttcatggactggtggatttcatccagaaccacagcaag
aagggaggggatcagcagcagcctcctcagcacagcaaatacaagacctacatgtgccgt
gacatgaagcagaagggtggctgtccccgtggagcgagctgcacctttgctcactctcag
gacgagctagaaaaataccgtaagatgaacaagcgtgtggggatgcgccgtcagctcagt
cagtctcttacccagctgaatgagctggatctgggactgttatctgacgacgggccgccc
atggagggtctgccacgcaaatcctcctctatcaccaacgggatactggcagcgggacct
ggatcggctctggctcatctggtttcccgaggctcggacccatcttatgagcccacacac
aaacctaccaagatggattctgggagccttagtgcacctggctcacctccagactcattg
gaatccataccgaaaccatcaatgctcatgaatgcccagtccaggatagcaggcgatggc
gcagtgggacagaagcacttgtctgcggtgcctagagttcctcagatgtattcgtcacac
cagcctgacctgtatttccctgaaacaagagcaccaccaccaccatctgcctcatacgaa
tcctcccagtatgccacagctggtaatccttacccccaccatcatcgttacccccgtcat
cccgcacccgatccaggaatgtcgccatatccggactcttatcccaactcctacgtctca
aagcaccaatacgccaatcctagcgctcattatggatacccttcacgccatgacaaccga
tgccactcaccctacgctcatccccaaacattcgccccacgtgaagagctagtccgaaga
agtccagacatccctcccccgctacaaccccaaaacaccagcacctcatatctacccgaa
tctgctcaggagagatacaccaatgacacctataaccatcccagccagatcaggaattat
cacaggaatgcctaccctcgaactcagcactcgctggactacctgcaccggcgcagaaag
gagatcatggcccagctggaggagaggaaggttgtttctccaccgcctttcgcctcttca
cactcttatgactcgggctaccctcaagatatgagggcacagagagattacattgagaac
tcgcatggatttggacacttccgggaaccggactacactgcctcatattcaccatggtta
tgtgacaccatcggttcttacatcggcagcaaagacatgaagtccaaagagggcatgcac
tccatggacgcacaaaatgtagagaaaggcaaaagtctgcgagtacacggcttggagctt
caacgcagagcgactgaagttaaagacgatgaccccatcattccctttggctccctgcca
accgtgtctcgtttcggagccatttcgcgcacatctaaaccgggcttcccgccaaacagt
ccaatgccacccttgccaaactctgccaagcacaccgctgattatacctatgcgaaccac
agtgggtggagtggtgactcctaccagtcacaccaaacgtctcagggccacttcagcgag
cggtccagtttatctcctgccgtacaggcccgcgagcagctcaggatggagctacagcag
gtcaaccagcaaatcagccaacagacacacccccgcctggagaactccagctcagtgatg
tcccaagcatctcgggtggactggagctctgggaatttgtccagcgaacagctgagtttc
gagctgcaccaggtggagaaagagatcaacaagaggtcacaggagatggagaaccatgat
ggcaaatacaagcgcatctcagttgaaaatggaccagatgaacatcttctgcagagagat
gagcatcaactgagtctgagtgagggctccaatggttccatgggtttggtccaggactgt
ggtctcgtcagcagcagcatgtcctcactgaccagcaagacgtcctcgctcagcttgtcc
tctgaacaggtggccagcagccccgatctgcccaagaatggagtcgttcactcttag
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integrated database retrieval system
