Danio rerio (zebrafish): 569006
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Entry
569006 CDS
T01004
Symbol
upf2
Name
(RefSeq) regulator of nonsense transcripts 2 isoform X1
KO
K14327
regulator of nonsense transcripts 2
Organism
dre
Danio rerio (zebrafish)
Pathway
dre03013
Nucleocytoplasmic transport
dre03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
dre00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
569006 (upf2)
03015 mRNA surveillance pathway
569006 (upf2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dre03019
]
569006 (upf2)
Messenger RNA biogenesis [BR:
dre03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
569006 (upf2)
mRNA cycle factors
P-body specific factors
569006 (upf2)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MIF4G
Upf2
DUF1722
Motif
Other DBs
NCBI-GeneID:
569006
NCBI-ProteinID:
XP_073802916
ZFIN:
ZDB-GENE-090715-1
UniProt:
A0AC58J8W6
LinkDB
All DBs
Position
4:complement(1362612..1387328)
Genome browser
AA seq
1268 aa
AA seq
DB search
MSGSMPAERKKSVNMEERETGSFSKDRDAERPSGASRDKNKEENKMSGKKDGGKTAEDKK
RRAEEEKRKKEEKERKKKEEEKQRAEEEQRKKEEEEKKQLEEQEKKLLEEEAKRQREEEA
AQIREKEEADQLQQEAWERHHGRKDLRVKNQHAQETRPEEAFFSRLDSSLKKNTAFVKKL
RTLTEQQRGSLSQDFDSLNLSKYIGEAVSSMVEAKLKISDVGCAVHLCSLFHQRYAEFAP
LLLAAWKRHFEARKEEKTPNVSKLRTDLRFIAELTIVGLFTDKEGLSLIYEQLKNIIAAD
RETHTHVSVIISFCKHCGDDIAGLVPRKVKNAAEKYSLSFPPSQIINAEKQQPFQNLLRE
YFTSLTKHLKKDHRELQNIERQNRRILHSKGELSEDRHKQYEEFATQYQKLLANTQTLAD
LLDENMPELPQDKTVQEEHGPGIDIFTPGKPGEYDLEGGIWEDEDARNFYENMVDLKAFV
PAILFKDNEKSSQSSKESREGNSTEELEMELEALDIADEPMDLDATDEVESEELAKKLLD
EQEQEDEEASTGSHLKLIVDAFIQQLPNCINRDLIDKAAMDFCMNMNTKSNRRKLVRALF
TVPRQRLDLLPFYARLVATLHPCMSDVAEDLCSMLKGDFRFHIRKKDQINIETKNKTVRF
IGELAKFKMFSKTDTLHCLKMLLSDFSHHHIEMACTLLETCGRFLFRSPDSHLRTSVLLE
QMMRKKQAQHLDVRYVTMVENAYYYCNPPPMEKTVRRKRPPLQEYIRKLLYKDLSKVTTE
KVLRQMRKLPWHDSEVKGYLICCMVNIWNVKYNSIHCVANLLAGLVAYQEDVGIHVVDGV
LEDIRLGMEVNQPKFNQRRISSAKFLGELYNYRMVESAVIFRTLFSFISFGVNTDGTASP
LDPPEHLFRIRMVCTLLDTCGQYFDRGSSKKKLDCFLIYFQRYIWWKKSLDVWTKDQPFP
IDIEYMITDTLEMLRPKMKLCSSLEEACAHVSLLEREFLVKLGLEKDGRSSSSLGESEAL
DEEDDDDEDEGGAETEEQSGNESEMNEPEEEEGSENEEEEREEEEENTDYLTDSNKENET
DEENNEVTIRGGGLKHVACAEDEDFIQALDKMMLENLQQRSGEAVKVHQLDVAIPLQLKS
QLKKSSGPSCTSADPADAPDISDTMQFVMLTRKGNKQQFKILNVPLSSHLAANHFNQQQA
EQEERQRMKKLTLDINERQEQEDYQEMMQSVAQRPAQANTNRERRPRYQHPKGAPNADLI
FKTGGRRR
NT seq
3807 nt
NT seq
+upstream
nt +downstream
nt
atgagtggcagtatgcctgctgagcgcaagaagtccgtcaacatggaggagcgagagacg
ggctcgttcagcaaggacagagacgcagagcgaccgagcggcgcttccagagacaaaaac
aaagaggagaacaagatgagcggcaagaaggacggaggaaagactgcggaggacaagaag
agacgagctgaggaggagaagaggaagaaggaggagaaagagaggaagaagaaagaagag
gagaagcagagagctgaggaggagcagaggaagaaggaggaggaggagaagaaacagctg
gaggaacaggagaagaaactgctggaggaagaagccaaacggcagagggaggaggaggcc
gcacagatcagagaaaaggaggaagcggatcagctccagcaggaggcctgggagcgacac
catggccgaaaagacctgcgagtgaagaaccagcacgctcaggagacccgtccagaagag
gctttcttcagccgcctggactccagcctcaagaaaaacactgcttttgtcaaaaagctc
cgcacgctcacagaacaacagcgcggctccttatcgcaggacttcgactcactcaacctc
agcaaatacatcggggaggccgtgagctctatggtggaggccaagctgaagatctccgat
gtaggctgtgcagttcatctctgctcgcttttccaccagagatacgcagagttcgcacca
cttcttctcgccgcctggaagagacactttgaggcacgtaaagaggagaagacgcctaat
gtgagcaagctgcggaccgacctgcgcttcatcgcagagctcaccattgtagggctgttc
acggataaagaaggcctgtcgctgatctacgagcagctgaaaaatataatcgctgccgat
cgagagactcacactcacgtctccgtcattatcagcttctgtaagcactgtggagatgac
atcgccggattggtgccgcgcaaagttaaaaacgcagccgagaagtacagcctgtccttc
cctcccagccagatcatcaatgcggagaaacagcagcccttccagaacctgctgcgcgag
tatttcacctcgctcaccaaacacctgaagaaagaccaccgggagctgcagaacatcgag
aggcagaacagacgtatcctgcactctaaaggcgagctgagcgaggacagacacaagcag
tacgaggagttcgccacacagtaccagaagctgctggccaacactcagactctggccgac
ctgctggacgagaacatgccggaactgccccaggacaaaaccgtacaggaagagcacggt
ccaggcatcgacatcttcacaccggggaagccaggagagtatgatctagaaggaggaatc
tgggaggatgaagatgcaagaaacttctatgagaacatggtggatctgaaagcgtttgtt
cctgcaatcctgttcaaagacaacgagaagagcagccagagcagcaaagaaagccgagag
ggaaacagcactgaggagctggagatggagctggaggcgctggacatcgctgatgaaccg
atggatctggatgcaaccgatgaagtggagagtgaagaactggccaaaaaactgctggat
gagcaagagcaggaggatgaggaggccagcaccggctctcatctaaagctcatcgtggac
gctttcattcagcagctgccaaactgcattaacagagacctgatcgacaaggctgcaatg
gacttctgcatgaacatgaacaccaagtcaaaccgcaggaagttagtccgtgctctgttc
acagtgcccagacagaggttggatctgctgccgttttacgcccgtctggtggccactctt
cacccgtgtatgtctgacgtggctgaagacctctgctccatgctcaaaggagacttcaga
tttcatatcagaaagaaggaccaaatcaacattgagaccaagaataagacggtgaggttc
atcggagagttggccaagtttaagatgttctccaaaacagacacgctgcactgcctgaag
atgctgctgtctgatttctctcatcatcatatcgagatggcctgcacgctgctggagacg
tgtggacgtttcctcttccgctctccagattctcacctgcgcacgagtgtcctgctggag
cagatgatgcgcaagaagcaggctcagcatctggatgtgcgctacgtgaccatggtggaa
aacgcctattactactgcaaccctccgccgatggagaagacggtgcgcaggaagaggcct
ccgctgcaggagtacatccgaaaactgctctataaagacctgtccaaagtcaccactgag
aaggttttaaggcagatgcgtaagctgccgtggcatgacagtgaggtgaagggttacctg
atctgctgtatggtcaacatctggaacgtgaagtataacagcatccactgtgtggcaaac
ctgctggcaggactggtggcgtatcaggaggacgtgggcattcatgtggtggacggagtg
ctggaggatattcgcctcggcatggaggtgaatcagcccaagtttaaccagcggcggatc
agcagtgctaagtttctgggtgagctgtataactatcgaatggtggagtctgctgtcatc
ttcaggactctgttctccttcatctcgttcggggtgaacacggacggtactgccagtcct
ctggatccgccggagcatctgtttcgcatccgcatggtctgcacacttctggatacctgt
ggacagtacttcgaccgcggctccagcaagaagaagctcgactgcttcctcatttacttc
cagaggtacatctggtggaagaagagtctggacgtgtggactaaagatcagccgttccct
attgacatcgagtacatgatcacagacacactggagatgctgagacccaagatgaagctc
tgctcatctctggaggaggcctgcgctcacgtcagcctgctggagagagagttccttgtc
aaactgggtctggagaaggacggccgctcctccagctctttgggcgagagtgaagctcta
gatgaagaggatgatgatgatgaagatgaaggaggagcggagacggaggagcagtccggg
aacgagagcgagatgaacgaacccgaggaggaggagggctcagagaatgaggaagaggag
cgtgaggaggaagaggagaacacagactatctgaccgactccaacaaggagaacgagacg
gacgaggagaacaacgaggtgactattcgtggtggaggactcaaacacgtggcgtgtgct
gaggatgaggacttcattcaggctctggataagatgatgctggagaacctgcagcagcgc
agtggcgaggcggtgaaggtgcatcagctggatgtggccattcctctgcagttgaagagt
cagctgaagaagagcagcgggccgtcctgcaccagcgcagaccctgcagacgctcccgac
atcagcgacaccatgcagttcgtcatgctcacacgcaagggcaacaagcagcagtttaag
atcctgaacgtgccgctgtcgtctcacctggcagcgaatcactttaaccagcagcaggcg
gagcaggaggagcgacagcgcatgaagaaactcacactggacatcaacgagaggcaggag
caggaggactaccaggagatgatgcagtctgtggctcagagacccgctcaagcaaacacc
aaccgtgagcggcgaccgcgctaccagcaccctaaaggagcgcccaatgcagacctcata
ttcaagaccggcggcaggagacgctga
DBGET
integrated database retrieval system
