Danio rerio (zebrafish): 569589
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Entry
569589 CDS
T01004
Symbol
arid1b
Name
(RefSeq) AT-rich interactive domain-containing protein 1B isoform 1
KO
K11653
AT-rich interactive domain-containing protein 1
Organism
dre
Danio rerio (zebrafish)
Pathway
dre03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
dre00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
569589 (arid1b)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
dre03000
]
569589 (arid1b)
03021 Transcription machinery [BR:
dre03021
]
569589 (arid1b)
03036 Chromosome and associated proteins [BR:
dre03036
]
569589 (arid1b)
Transcription factors [BR:
dre03000
]
Eukaryotic type
Helix-turn-helix
ARID
569589 (arid1b)
Transcription machinery [BR:
dre03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
569589 (arid1b)
Chromosome and associated proteins [BR:
dre03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
569589 (arid1b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
BAF250_C
ARID
Motif
Other DBs
NCBI-GeneID:
569589
NCBI-ProteinID:
NP_001333143
ZFIN:
ZDB-GENE-030131-4459
Ensembl:
ENSDARG00000092503
UniProt:
A0A0R4ISW4
LinkDB
All DBs
Position
20:complement(5042862..5203511)
Genome browser
AA seq
2122 aa
AA seq
DB search
METGLVANHQVKNVGRGDPPPSPHHRTPPQQQSRAFHQQHQQRAAHNNNNISITIHSSSN
RADPQHGGKEDALEAQVDRHPRLLNTGDEEDRSSKTGGDRMGSRYEHSNFGPASNNNNNN
NSGGGGGSASQSGSSSVSEFNNYYGNGRGGPCFDQHGGQQSPRTALIHQAPGNMDQVQNS
HEGYHNNPYNHYPNYRPGYGGAGYGMMSPSRQGNMMGPGTNSPTAAAASHGKAAMASTTP
APGANVGSFQRFPGQNQQHPSGATPTLNQLLTSPSPMMRGYGGGYQDYSNPPSQQQQSGM
GLGKDMSSPYSPAASHSWAAQQRNHPAMSPGNNGNSRAQVATMDPMTMKRSQMYGMGNNP
YSQQGTYAGQPYGSPTAHRYPMGMQGRGQVGIGGMQYSQQQQMPAQYGPQGMSGYCQQGQ
PPYFSPPQQQSAAPSQPPYMQQRAPTQQDTLQEGYGSRGQSGKPNHDDMGLTQQDRPSSL
PDLSGSIDDLPTGTEAGLSSAVSASGSTSSQGEQSNPAQSPFSPHASPRVPSMRSGPSPS
PVGSPVGSSQSRSGPISPASGPGTQMAPQTPGNVPDVGSHSTHSQSPMSQERGYASNMQR
NAPGSQFGGQQPGPSMSPHSCPTGPMHHSVGSYQMGPSYGPQSGQYGPSGNYPRPANYGG
APGANYSGPGPGMGNSLGMNASSPMHGQGPGQPCGSMTTARGPGHAAGGRPYPAGSSSVA
PTSPNMPQSAGPGMGPPPPNVGRKPHESGPASAQQNLVPSSQARPAGYQGGSHMLGMGPG
GPYSLPPSNSSARMTPQGPSYNTMPTGPMTGSGDTMMPTDPKQRAEHKEEGSTPATEPPK
PKDNYGSQCVSQPPTPSPLSPSPASLSSYQGDDSDSISSPAWPKNPSSPKHSTVNMTNEK
ITRLYDMGCEPERRAWVDRYIAFMEERGTPVPNLPSVGKKPLDLCRLYLCVREIGGLAMV
NKNKKWRELSTHLNVGTSSSSASSLKKQYIQYLFAYECKVERGEEPPPDAFAMGDGKKQQ
QQAKIQPPSPANSGSLQGPQTPQSTGSSTMTEMPGDLKPPTPATTPHGQVTPQPAVRNSG
ISVQDPFSEGSDPAFQKRGPMHGGSGDATSRMQFDTSKDPFGAARKGGSESFVPGQMPGS
GMQEMYSRGPSSGMGMGPRPQYSYNPGFERRPDHVMGPEGGIAASGNQNNMVPSSSDPSM
FSGSRYASHQSRHGHDGYGQQYPHSMPYGAHGMYPQQQGYKRPGEGMYGPPAKRHESEAY
GMQYGGQQPDMYSQYGYPERRPMQSPFPYGYGRDRMQPGGQGPPQHSMMSGGPPPSSNSS
GGPQGNMWHTRHDMAYPYPTRQSHGPPYPSMSRGDDPEARVSQESQWPGQRQSPYPSHSS
SSSSSMPPMASRQPPSSYQSPPAMPNHISRVPSPAPFPRSVGGSMSPTKAHMMASLKQMQ
KPGGPVSMPSSQSGGLPGQGFSSIHREVNYPLDSVEATQPQLKPRRRLTSKDIGTPEAWR
VMMSLKSGLLAESTWALDTINILLYDDNTVSSFGLSQLPGFLELIVEFFRRCLIEIFGIL
EEYEVGTEGQKTLLGSCSEPTEKQQPSTPDFKSQSIAEHVEKRLDVEPEKPQPSSSAAAL
VMEKKEESAEDKADDEEKNTGKDPCPPVEPRPKQASKYDRLPVKIEEKDAEEDCVEDRSE
LLGLAGEFKSGLLHWKAGGGDSTAHIQTYFERSWEEEQPLENQEGVQAIGKETVEEQPRG
QEELKRELPGPSEENLTATVDDVLKSNPGSISEGESQTFPFRTRENKSSITLLEDEPRCW
DEAPLSVAESWQDELAKRCICVSNIIRGLSFVPGNDNELARHPGLVLILGKLVLLHHEHP
KRKRMPATYQREEERGLACSKDEWWWDCLGALRENTLVTLANISGQLDLSVYPESICLPI
LDGLLHWMVCPSAEAQDPFCTANGFSSLTPQRLVLECLCKLSIQDSNVDLLLATPPFGRQ
ERLFATLVRHVGDRKSQVCREMAVAVLSNLAQGDPTAARAVALQKGSVGALISFLEDSVA
MAQYQQSPHSLLHMGHSTQHEPPSINMMCRAAKALLAMAKVEENRPEFVLFESRLLDISL
SSVLNSGVAAILCEVLFKLGRS
NT seq
6366 nt
NT seq
+upstream
nt +downstream
nt
atggaaacgggtctggtcgcgaatcatcaagtgaaaaatgttggacgcggagatccccct
ccttcgcctcatcatcgcacacctccacagcaacagtcgcgagcattccatcagcagcac
cagcagcgagccgcgcacaacaacaacaacatctccatcaccatccacagcagcagcaac
cgcgcagatccgcagcatggaggaaaagaagacgctctggaggcgcaggtcgatcgccat
ccgcgtttgctgaacacaggcgacgaggaggatcgctcgtccaaaaccgggggggatcga
atgggcagcaggtacgagcactccaactttggaccagcgagcaacaataacaacaacaac
aacagcggcggcggaggcagcgcgtcccaaagcgggagcagctcagtttctgagtttaat
aattattacgggaatggaagaggagggccttgctttgatcaacatggcggacaacaaagc
cctaggacggctttaatacatcaggcaccgggcaacatggatcaagtgcagaactcccac
gaagggtaccataataatccgtacaaccactatcccaactaccggccggggtacggcggc
gctggatacggtatgatgagcccgtcgcggcaggggaacatgatgggcccaggtaccaat
tcgcctaccgctgctgctgctagccatggcaaggctgctatggcctcgaccaccccggct
cctggtgccaatgttgggagctttcagaggtttcccggacaaaaccaacagcacccttct
ggagctacacccaccctgaaccagctcctgacatccccgagtccgatgatgcggggatac
ggtggcggctatcaagattacagcaacccgccatcgcagcagcagcagtcgggtatgggt
ttgggcaaagacatgagctccccgtacagcccagctgccagccacagctgggcagcacaa
caaagaaaccacccggcaatgagccccgggaacaacggcaacagcagagcccaggtggca
actatggaccctatgaccatgaagcgttctcagatgtatgggatgggcaacagtccctac
tctcagcaaggaacttatgccggacagccatacggatcacccactgctcaccgatatcca
atgggaatgcagggccgtgggcaagttggcatcggaggaatgcagtactctcagcaacag
cagatgccagctcagtatgggccacaaggaatgagtggctactgtcagcaggggcagcct
ccgtatttcagccctccacaacagcagtccgcagccccctctcaacccccctacatgcag
cagcgagctccaacacaacaggacacactgcaggagggatatggcagcaggggacagtct
ggaaaaccaaaccacgatgacatgggtcttactcagcaggaccgcccgtctagcctcccg
gatctctctggctctattgacgacctccccacgggaacagaagcaggtctcagttcagcc
gtcagcgcttcaggctctaccagcagtcaaggcgagcagagtaaccccgctcagtccccc
ttctccccccacgcctcacccagagttcccagcatgcgcagcggaccctcgccctcccca
gttggatctcctgtgggttccagccagtcccgatctgggcccatatcacctgccagtggg
ccaggcacacagatggcccctcagaccccagggaatgttccagacgtgggctcccattcc
actcacagtcagtcgcctatgtctcaggagagaggatatgcatcaaacatgcagcgcaat
gcacctggttcccagtttggaggtcagcagcctggaccttctatgtctccacactcctgt
ccgactggccctatgcaccacagtgtgggttcctatcagatgggcccttcttacgggcct
cagagtggccagtatggtccttcaggtaactacccgcgtcctgctaattatggcggtgca
ccgggtgccaactacagtggccctggtccaggcatgggcaacagtctcggcatgaatgcc
agcagtccaatgcatggccagggtccagggcaaccctgtggctctatgacgacagctcga
ggtccaggacatgcggccggtggcaggccgtacccagcgggctccagcagtgttgctcca
acctctcccaacatgcctcagtctgctggccctgggatgggtccacctccacccaacgtt
ggccgcaaaccccacgagagtggccctgcatctgcccagcagaacctcgtcccctcgagc
caggccaggccagccgggtatcaaggtggctcccacatgcttggaatgggtcccggaggg
ccttacagccttccaccgagcaatagctctgccaggatgacccctcaaggtccctcctac
aacacaatgcccacagggcccatgacaggctcaggggacaccatgatgcccaccgatccc
aaacagagagctgagcacaaggaggagggcagcacacccgccacagagccccctaagcca
aaggacaactacggttctcagtgtgtgtcccagcctccaaccccgtcccctctgtcccct
agcccagctagtctgtcctcttatcagggggacgacagcgatagcattagcagccctgcc
tggccaaagaaccccagcagccctaagcacagcacagtgaacatgacgaatgagaagata
acgcggctgtacgacatgggctgtgagcctgagaggagggcatgggtggaccgttacatc
gcctttatggaggagaggggcacgccggtccctaacctgccttcagtgggcaagaagccg
ctggatctgtgccgcctctacctctgcgttcgtgaaatcggaggcttggctatggtaaat
aagaacaagaaatggagagagctgtccacccacttgaatgtggggacgtccagcagctcg
gccagctcccttaagaaacagtatatccaatacctgtttgcctacgagtgcaaggtggag
cgcggagaagaacctccacctgatgcgttcgctatgggcgatggcaagaagcagcaacag
caagccaagatccagccaccatcgcctgcaaactcaggctctcttcaggggccgcagact
cctcaatctacaggcagcagcaccatgacagagatgccaggggacctaaagccgccaaca
cccgctaccacaccgcacggacaagtcacccctcagcctgccgtcagaaacagtggtatt
agcgtgcaagatccgttctcagaaggcagtgacccagcctttcagaagcgaggtcccatg
catggaggcagcggagatgctacctctagaatgcagtttgacactagtaaggatcccttc
ggagctgctaggaaaggtggctctgagtccttcgtgccaggacagatgccaggtagtggc
atgcaggaaatgtattcccgtgggccgtcctcagggatgggaatgggcccacgaccccag
tactcttacaaccctggttttgaaaggaggccagaccatgtcatgggtccagagggggga
attgcagcttctggaaatcagaacaacatggtgccttccagcagcgatcccagcatgttc
tcaggcagtagatacgcctctcatcagagcagacacggccatgatggatatgggcagcag
tacccgcacagcatgccatacggtgcacatgggatgtatccgcaacagcagggttataag
cggcctggagaagggatgtacggtcctcctgctaagcggcacgagagtgaagcctatggt
atgcagtacggtggtcagcagcctgatatgtacagccaatatggttacccagagcgtagg
cccatgcagagcccattcccttatgggtacggccgagaccgcatgcagccaggtgggcag
ggacctcctcagcacagcatgatgagcggtggaccacccccatcctccaactccagcggc
gggcctcaggggaacatgtggcacactaggcacgacatgggatacccttaccccacccga
cagagtcatggccctccatacccctcaatgagccgtggggatgatccggaagccagggtc
agtcaggaaagtcagtggcccggtcagcgccaatctccctacccgtcacactcttcgtcc
tcttccagctccatgccccccatggctagccggcaaccaccttcttcctaccaatctcct
ccagcaatgccaaaccatatatctcgagttccaagccccgcacctttccctcgctctgtg
ggtggctctatgtcacctaccaaggctcatatgatggcgtctctgaagcagatgcagaag
ccagggggcccagtgtccatgccaagctctcaaagtggtggtcttcctgggcaaggcttc
ccatcaatccatagggaagtcaattaccctctggactctgtggaagccacacaaccccag
cttaaacctcgccgaaggttaacatccaaagacattggcacaccagaggcttggcgtgtg
atgatgtcccttaagtctggcttgcttgccgagagcacatgggccctagataccataaat
attttattatatgatgacaacacagtctcttcttttggtctgtctcagctgcctggtttc
ttggagctcattgttgaatttttcagaaggtgtttaatcgagatctttgggatccttgag
gaatatgaagttggaacagagggtcagaaaactcttcttggttcatgttcagaacctaca
gaaaaacagcaaccttccactccagacttcaaaagccaatccattgcggaacatgtggag
aagcgattagacgtggagcctgagaaacctcagcccagcagctcagcagcagcactcgtc
atggagaaaaaagaagagtcagcagaggataaggcagatgacgaggaaaagaacactggt
aaagatccatgtcctcctgtggagcccagacccaagcaggccagtaagtatgacaggctt
ccagtgaaaatcgaagagaaagacgctgaggaggattgtgtggaggatcgatcagagctg
ctaggtcttgccggggagttcaaaagtggtctgctgcactggaaggcaggcggcggggac
tccactgcccatatccagacctatttcgagagaagctgggaagaggaacagcctctcgag
aatcaggaaggtgtgcaagctattggaaaaaaaacggttgaagagcagcccagagggcaa
gaggagctgaaaagagaactcccagggccttcagaggaaaacttgacagccactgtagat
gacgtgctaaaatcgaatccagggtccatatctgaaggtgaatctcagacattccccttc
cgcaccagggagaacaagagcagcattactttgctggaagatgagccgcggtgctgggat
gaagcacctctttctgtagctgaaagctggcaggatgagttggccaagcgctgcatctgc
gtgtccaatatcatccgcggactctcctttgtcccaggcaatgacagtgaattggctcgg
cacccaggtttagtgctcattcttggcaaacttgtgcttctgcaccacgaacaccctaaa
agaaaaaggatgccggctacttaccagcgagaagaagagcgaggtctggcttgcagcaag
gacgaatggtggtgggactgccttggtgccttgcgtgaaaacaccttggtcacccttgca
aacatttcaggacagctagatctgtccgtttatccagaaagtatctgccttcccattctg
gatgggctgctccactggatggtgtgcccttcagcagaagcccaggaccccttttgcacg
gcaaatggcttctcgtccctcacaccgcagaggctggtgctggagtgcctgtgcaaactg
agcatccaagactcgaacgttgacctcctgctggccacaccgcccttcggcagacaggag
cgcctctttgccactttagtgcggcatgttggtgatcgaaagagtcaggtgtgtcgtgag
atggctgtagccgttctctctaaccttgcacaaggtgacccaacagctgcccgagctgtt
gccctgcagaagggcagcgtcggagccttgataagtttcctagaggacagcgttgcaatg
gcgcagtatcagcaaagccctcatagcctcttgcacatgggacactctacccaacatgag
ccgcccagtatcaacatgatgtgccgggccgccaaagccctgctggccatggcccaagtg
gaagagaacaggcccgagtttgtcctctacgagagcaggcttcttgatatctcgctgtcc
tccgtgctgaactctggagtggcggccatcttgtgtgaggtactcttcaagctcggccgc
tcgtga
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integrated database retrieval system
