Danio rerio (zebrafish): 569589
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Entry
569589 CDS
T01004
Symbol
arid1b
Name
(RefSeq) AT-rich interactive domain-containing protein 1B isoform 1
KO
K11653
AT-rich interactive domain-containing protein 1
Organism
dre
Danio rerio (zebrafish)
Pathway
dre03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
dre00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
569589 (arid1b)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
dre03000
]
569589 (arid1b)
03021 Transcription machinery [BR:
dre03021
]
569589 (arid1b)
03036 Chromosome and associated proteins [BR:
dre03036
]
569589 (arid1b)
Transcription factors [BR:
dre03000
]
Eukaryotic type
Helix-turn-helix
ARID
569589 (arid1b)
Transcription machinery [BR:
dre03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
569589 (arid1b)
Chromosome and associated proteins [BR:
dre03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
569589 (arid1b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
BAF250_C
ARID
Motif
Other DBs
NCBI-GeneID:
569589
NCBI-ProteinID:
NP_001333143
ZFIN:
ZDB-GENE-030131-4459
Ensembl:
ENSDARG00000092503
UniProt:
A0A0R4ISW4
LinkDB
All DBs
Position
20:complement(4897996..5052838)
Genome browser
AA seq
2122 aa
AA seq
DB search
METGLVANHQVKNVGRGDPPPSPHHRTPPQQQSRAFHQQHQQRAAHNNNNISITIHSSSN
RADPQHGGKEDALEAQVDRHPRLLNTGDEEDRSSKTGGDRMGSRYEHSNFGPASNNNNNN
NSGGGGGSASQSGSSSVSEFNNYYGNGRGGPCFDQHGGQQSPRTALIHQAPGNMDQVQNS
HEGYHNNPYNHYPNYRPGYGGAGYGMMSPSRQGNMMGPGTNSPTAAAASHGKAAMASTTP
APGANVGSFQRFPGQNQQHPSGATPTLNQLLTSPSPMMRGYGGGYQDYSNPPSQQQQSGM
GLGKDMSSPYSPAASHSWAAQQRNHPAMSPGNNGNSRAQVATMDPMTMKRSQMYGMGNNP
YSQQGTYAGQPYGSPTAHRYPMGMQGRGQVGIGGMQYSQQQQMPAQYGPQGMSGYCQQGQ
PPYFSPPQQQSAAPSQPPYMQQRAPTQQDTLQEGYGSRGQSGKPNHDDMGLTQQDRPSSL
PDLSGSIDDLPTGTEAGLSSAVSASGSTSSQGEQSNPAQSPFSPHASPRVPSMRSGPSPS
PVGSPVGSSQSRSGPISPASGPGTQMAPQTPGNVPDVGSHSTHSQSPMSQERGYASNMQR
NAPGSQFGGQQPGPSMSPHSCPTGPMHHSVGSYQMGPSYGPQSGQYGPSGNYPRPANYGG
APGANYSGPGPGMGNSLGMNASSPMHGQGPGQPCGSMTTARGPGHAAGGRPYPAGSSSVA
PTSPNMPQSAGPGMGPPPPNVGRKPHESGPASAQQNLVPSSQARPAGYQGGSHMLGMGPG
GPYSLPPSNSSARMTPQGPSYNTMPTGPMTGSGDTMMPTDPKQRAEHKEEGSTPATEPPK
PKDNYGSQCVSQPPTPSPLSPSPASLSSYQGDDSDSISSPAWPKNPSSPKHSTVNMTNEK
ITRLYDMGCEPERRAWVDRYIAFMEERGTPVPNLPSVGKKPLDLCRLYLCVREIGGLAMV
NKNKKWRELSTHLNVGTSSSSASSLKKQYIQYLFAYECKVERGEEPPPDAFAMGDGKKQQ
QQAKIQPPSPANSGSLQGPQTPQSTGSSTMTEMPGDLKPPTPATTPHGQVTPQPAVRNSG
ISVQDPFSEGSDPAFQKRGPMHGGSGDATSRMQFDTSKDPFGAARKGGSESFVPGQMPGS
GMQEMYSRGPSSGMGMGPRPQYSYNPGFERRPDHVMGPEGGIAASGNQNNMVPSSSDPSM
FSGSRYASHQSRHGHDGYGQQYPHSMPYGAHGMYPQQQGYKRPGEGMYGPPAKRHESEAY
GMQYGGQQPDMYSQYGYPERRPMQSPFPYGYGRDRMQPGGQGPPQHSMMSGGPPPSSNSS
GGPQGNMWHTRHDMAYPYPTRQSHGPPYPSMSRGDDPEARVSQESQWPGQRQSPYPSHSS
SSSSSMPPMASRQPPSSYQSPPAMPNHISRVPSPAPFPRSVGGSMSPTKAHMMASLKQMQ
KPGGPVSMPSSQSGGLPGQGFSSIHREVNYPLDSVEATQPQLKPRRRLTSKDIGTPEAWR
VMMSLKSGLLAESTWALDTINILLYDDNTVSSFGLSQLPGFLELIVEFFRRCLIEIFGIL
EEYEVGTEGQKTLLGSCSEPTEKQQPSTPDFKSQSIAEHVEKRLDVEPEKPQPSSSAAAL
VMEKKEESAEDKADDEEKNTGKDPCPPVEPRPKQASKYDRLPVKIEEKDAEEDCVEDRSE
LLGLAGEFKSGLLHWKAGGGDSTAHIQTYFERSWEEEQPLENQEGVQAIGKETVEEQPRG
QEELKRELPGPSEENLTATVDDVLKSNPGSISEGESQTFPFRTRENKSSITLLEDEPRCW
DEAPLSVAESWQDELAKRCICVSNIIRGLSFVPGNDNELARHPGLVLILGKLVLLHHEHP
KRKRMPATYQREEERGLACSKDEWWWDCLGALRENTLVTLANISGQLDLSVYPESICLPI
LDGLLHWMVCPSAEAQDPFCTANGFSSLTPQRLVLECLCKLSIQDSNVDLLLATPPFGRQ
ERLFATLVRHVGDRKSQVCREMAVAVLSNLAQGDPTAARAVALQKGSVGALISFLEDSVA
MAQYQQSPHSLLHMGHSTQHEPPSINMMCRAAKALLAMAKVEENRPEFVLFESRLLDISL
SSVLNSGVAAILCEVLFKLGRS
NT seq
6369 nt
NT seq
+upstream
nt +downstream
nt
atggaaacgggtctggtcgcgaatcatcaagtgaaaaatgttggacgcggagatccccct
ccttcgcctcatcatcgcacacctccacagcaacagtcgcgagcattccatcagcagcac
cagcagcgagccgcgcacaacaacaacaacatctccatcaccatccacagcagcagcaac
cgcgcagatccgcagcatggaggaaaagaagacgctctggaggcgcaggtcgatcgccat
ccgcgtttgctgaacacaggcgacgaggaggatcgctcgtccaaaaccgggggggatcga
atgggcagcaggtacgagcactccaactttggaccagcgagcaacaataacaacaacaac
aacagcggcggcggcggaggcagcgcgtcccaaagcgggagcagctcagtttctgagttt
aataattattacgggaatggaagaggagggccttgctttgatcaacatggcggacaacaa
agccctaggacggctttaatacatcaggcaccgggcaacatggatcaagtgcagaactcc
cacgaagggtaccataataatccgtacaaccactatcccaactaccggccggggtacggc
ggcgctggatacggtatgatgagcccgtcgcggcaggggaacatgatgggcccaggtacc
aattcgcctaccgctgctgctgctagccatggcaaggctgctatggcctcgaccaccccg
gctcctggtgccaatgttgggagctttcagaggtttcccggacaaaaccaacagcaccct
tctggagctacacccaccctgaaccagctcctgacatccccgagtccgatgatgcgggga
tacggtggcggctatcaagattacagcaacccgccatcgcagcagcagcagtcgggtatg
ggtttgggcaaagacatgagctccccgtacagcccagctgccagccacagctgggcagca
caacaaagaaaccacccggcaatgagccccgggaacaacggcaacagcagagcccaggtg
gcaactatggaccctatgaccatgaagcgttctcagatgtatgggatgggcaacaatccc
tattcccagcaaggaacttatgccggacagccatacggatcacccactgctcaccgatat
ccaatgggaatgcagggccgtgggcaagttggcatcggaggaatgcagtactctcagcaa
cagcagatgccagctcagtatgggccacaaggaatgagtggctactgtcagcaggggcag
cctccgtatttcagccctccacaacagcagtccgcagccccctctcaacccccctacatg
cagcagcgagctccaacacaacaggacacactgcaggagggatatggcagcaggggacag
tctggaaaaccaaaccacgatgacatgggtcttactcagcaggaccgcccgtctagcctc
ccggatctctctggctctattgacgacctccccacgggaacagaagcaggtctcagttca
gccgtcagcgcttcaggctctaccagcagtcaaggcgagcagagtaaccccgctcagtcc
cccttctccccccacgcctcacccagagttcccagcatgcgcagcggaccctcgccctcc
ccagttggatctcctgtgggttccagccagtcccgatctgggcccatatcacctgccagt
gggccaggcacacagatggcccctcagaccccagggaatgttccagacgtgggctcccat
tccactcacagtcagtcgcctatgtctcaggagagaggatatgcatcaaacatgcagcgc
aatgcacctggttcccagtttggaggtcagcagcctggaccttctatgtctccacactcc
tgtccgactggccctatgcaccacagtgtgggttcctatcagatgggcccttcttacggg
cctcagagtggccagtatggtccttcaggtaactacccgcgtcctgctaattatggcggt
gcaccgggtgccaactacagtggccctggtccaggcatgggcaacagtctcggcatgaat
gccagcagtccaatgcatggccagggtccagggcaaccctgtggctctatgacgacagct
cgaggtccaggacatgcggccggtggcaggccgtacccagcgggctccagcagtgttgct
ccaacctctcccaacatgcctcagtctgctggccctgggatgggtccacctccacccaac
gttggccgcaaaccccacgagagtggtcctgcatctgcccagcagaacctcgtcccctcg
agccaggccaggccagccgggtatcaaggtggctcccacatgcttggaatgggtcccgga
gggccttacagccttccaccaagcaatagctctgccaggatgacccctcaaggtccctct
tacaacacaatgcccacagggcccatgacaggctcaggggacaccatgatgcccaccgat
cccaaacagagagctgagcacaaggaggagggcagcacacccgccacagagccccctaag
ccaaaggacaactacggttctcagtgtgtgtcccagcctccaaccccgtcccctctgtcc
cctagcccagctagtctgtcctcttatcagggggacgacagcgatagcattagcagccct
gcctggccaaagaaccccagcagccctaagcacagcacagtgaacatgacgaatgagaag
ataacgcggctgtacgacatgggctgtgagcctgagaggagggcatgggtggaccgctac
atcgcctttatggaggagaggggcacgccggtccctaacctgccttcagtgggcaagaag
ccgctggatctgtgccgcctctacctctgcgttcgtgaaatcggaggcttggctatggta
aataagaacaagaaatggagagagctgtccacccacttgaatgtggggacgtccagcagc
tcggccagctcccttaagaaacagtatatccaatacctgtttgcctacgagtgcaaggtg
gagcgcggagaagaacctccacctgatgcgttcgctatgggcgatggcaagaagcagcaa
cagcaagccaagatccagccaccatcgcctgcaaactcaggctctcttcaggggccgcag
actcctcaatctacaggcagcagcaccatgacagaaatgccaggggacctgaagccgcca
acacccgctaccacaccgcacggacaagtcacccctcagcctgccgtcagaaacagtggt
attagtgtgcaagatccgttctcagaaggcagtgacccagcctttcagaagcgaggtccc
atgcatggaggcagcggagatgctacctctagaatgcagtttgacactagtaaggatccc
ttcggagccgctaggaaaggtggctctgagtccttcgtgccaggacagatgccaggtagt
ggcatgcaggaaatgtattcccgtgggccgtcctcagggatgggaatgggcccacgaccc
cagtactcttacaaccctggttttgaaaggaggccagaccatgtcatgggtccagagggg
ggaattgcagcttctggaaatcagaacaacatggtgccttccagcagcgatcccagcatg
ttctcaggcagtagatacgcctctcatcagagcagacacggccatgatggatatgggcag
cagtacccgcacagcatgccatacggtgcacatgggatgtatccgcaacagcagggttat
aagcggcctggagaagggatgtacggtcctcctgctaagcggcacgagagtgaagcctat
ggtatgcagtacggtggtcagcagcctgatatgtacagccaatatggttacccagagcgt
aggcccatgcagagcccattcccttatgggtacggccgagatcgcatgcagccaggtggg
cagggacctcctcagcacagcatgatgagcggtggaccacccccatcctccaactccagc
ggcgggcctcaggggaacatgtggcacactaggcacgacatggcatacccttaccccacc
cgacagagtcatggccctccatacccctcaatgagccgtggggatgatccggaagccagg
gtcagtcaggaaagtcagtggcccggtcagcgccaatctccctacccgtcacactcttcg
tcctcttccagctccatgccccccatggctagccggcaaccaccttcttcctaccaatct
cctccagcaatgccaaaccatatatctcgagttccaagccccgcacctttccctcgctct
gtgggtggctctatgtcacctaccaaggctcatatgatggcgtctctgaagcagatgcag
aagccagggggcccagtgtccatgccaagctctcaaagtggtggtcttcctgggcaaggc
ttctcatcaatccatagggaagtcaattaccctctggactctgtggaggccacacaaccc
cagcttaaacctcgccgaaggttaacgtcaaaagacattggcacaccagaggcttggcgt
gtgatgatgtcccttaagtctggcttgcttgccgagagcacatgggccctagataccata
aatattttattatatgatgacaacacagtctcttcttttggtctgtctcagctgcctggt
ttcttggagctcattgttgaatttttcagaaggtgtttaatagagatctttgggatcctt
gaggaatatgaagttggaacagagggtcagaaaactcttcttggttcatgttcagaacct
acagaaaaacagcaaccttccactccagacttcaaaagccaatccattgcggaacatgtg
gagaagcgattagacgtggagcctgagaaacctcagcccagcagctcagcagcagcactc
gtcatggagaaaaaagaagagtcagcagaggataaggcagatgacgaggaaaagaacact
ggtaaagatccatgtcctcctgtggagcccagacccaagcaggccagtaagtatgacagg
cttccagtgaaaatcgaagagaaagacgctgaggaggattgtgtggaggatcgatcagag
ctgctaggtcttgccggggagttcaaaagtggtctgctgcactggaaggcaggcggcggg
gactccactgcccatatccagacctatttcgagagaagctgggaagaggaacagcctctc
gagaatcaggaaggtgtgcaagctattggaaaagaaacggttgaagagcagcccagaggg
caagaggagctgaaaagagaactcccagggccttcagaggaaaacttgacagccactgta
gatgatgtgctaaaatcaaatccagggtccatatctgaaggtgaatctcagacattcccc
ttccgcaccagggagaacaagagcagcattactttgctggaagatgagccgcggtgctgg
gatgaagcacctctttctgtagctgaaagctggcaggatgagttggccaagcgctgcatc
tgcgtgtccaatatcatccgcggactctcctttgtcccaggcaatgacaatgaattggct
cggcacccaggtttagtgctcattcttggcaaacttgtgcttctgcaccacgaacaccct
aaaagaaaaaggatgccagctacttaccagcgagaagaagagcgaggtctggcttgcagc
aaagacgaatggtggtgggactgccttggtgccttgcgtgaaaacaccttggtcaccctt
gcaaacatttcgggacagctagatctgtccgtttatccagaaagtatctgccttcccatt
ctggatgggctgctccactggatggtgtgcccttcagcagaagcccaggaccccttttgc
acggcaaatggcttctcgtccctcacaccgcagaggctggtgctggagtgcctgtgcaaa
ctgagcatccaagactcgaacgttgacctcctgctggccacaccgcccttcggcagacag
gagcgcctctttgccactttagtgcggcatgttggtgatcgaaagagtcaggtgtgtcgt
gagatggctgtagccgttctctctaaccttgcacaaggtgacccaacagctgcccgagct
gttgccctgcagaagggcagcgtcggagccttgataagtttcctagaggacagcgttgca
atggcgcagtatcagcaaagccctcatagcctcttgcacatgggacactctacccaacat
gagccgcccagtatcaacatgatgtgccgggccgccaaagccctgctggccatggccaaa
gtggaagagaacaggcccgagtttgtcctcttcgagagcaggcttcttgatatctcgctg
tcctccgtgctgaactctggagtggcggccatcttgtgtgaggtactcttcaagctcggc
cgctcgtga
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integrated database retrieval system
