KEGG   Danio rerio (zebrafish): 570194
Entry
570194            CDS       T01004                                 
Symbol
kdm4c
Name
(RefSeq) lysine-specific demethylase 4C
  KO
K06709  [histone H3]-trimethyl-L-lysine9/36 demethylase [EC:1.14.11.66 1.14.11.69]
Organism
dre  Danio rerio (zebrafish)
Brite
KEGG Orthology (KO) [BR:dre00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03036 Chromosome and associated proteins [BR:dre03036]
    570194 (kdm4c)
Enzymes [BR:dre01000]
 1. Oxidoreductases
  1.14  Acting on paired donors, with incorporation or reduction of molecular oxygen
   1.14.11  With 2-oxoglutarate as one donor, and incorporation of one atom of oxygen into each donor
    1.14.11.66  [histone H3]-trimethyl-L-lysine9 demethylase
     570194 (kdm4c)
    1.14.11.69  [histone H3]-trimethyl-L-lysine36 demethylase
     570194 (kdm4c)
Chromosome and associated proteins [BR:dre03036]
 Eukaryotic type
  Histone modification proteins
   Histone demethylases
    570194 (kdm4c)
SSDB
Motif
Pfam: JmjC zf-HC5HC2H_2 Tudor_2 zf-HC5HC2H PHD_2 JmjN PHD Tudor_5 PHDvar_NSD
Other DBs
NCBI-GeneID: 570194
NCBI-ProteinID: NP_001077320
ZFIN: ZDB-GENE-070209-38
Ensembl: ENSDARG00000061504
UniProt: A0A8M1NDY8 A2RRT0
LinkDB
Position
1:23504803..23539760
AA seq 1482 aa
MAGVGASAPANPACKIMTFRPTMEEFKDFNQYLVYMESQGAHRAGLAKVIPPKGWKPRRN
YDDIDDFVIQAPIQQMVAGQSGLFTQYNIQKKPLTVQEFRRLANSDMYCTPRYLNYEDLE
RKYWKNLTFVSPIYGADVSGTLYDEDIEEWNIGHLNSVLDVIEEDCGVSIQGVNTPYLYF
GMWKTSFSWHTEDMDLYSINYLHFGEPKSWYAIPPEHGKRLERLAIGFFPNSFKSCEAFL
RHKMTLISPSVLKKYSIPFDKITQEAGEFMITFPYGYHAGFNHGFNCAESTNFASIRWID
YGKLATQCTCSKDMVKISMDPFVRRFQPDRYELWTQGKDSCSLDHTLPTPSTTPELQSWL
QRRRRKTPSTSLHAPRSCSKRLKTVDSAPVKGSGRRSRSAALTAKNKEEEEEDPVKHQKE
SQYSSELKGLAGRQMCVVKVTRVESDLLAQSTRQVKEASPERLLTPTLTTTSSQNDPDVG
HTSSQTSLILDEGQVSKNTNSTAQSEPESTSESDIIVDVTLGSERTAKNPNQTLNCESVL
ETIAPSIPVTHSLTLHSTGATVLFSESDSQQAKIETEETVIDTLTEDSIDCGTSALYKEQ
SSISLDPALQGSEPSMNRTNSEIQTTPFCEMPLLMPELIEERVNPQCLAPEMPSLTLAIR
PDSANHQPYNSAPILHLEKSHSPPVITDEVRGCSERACPDWPFILPKEGVSQSHKSISDS
FKAKPTSASFAPQWGTPEESKQEGNIHKCTSTDQNTQHESISNCTTPTRSILQSSATTHM
DFIDSKMVEGVGKETSQRIEEQSSSLTSSQSNFAESKPFTIWKNLSSDNPAVLIESLQPE
LVVGLTADYAHDSLPYTMWSESGCQQEKFSDSPNSSPHTQTWTNLEPIPMQCSDTEVSEN
APLDLKQENEEVEPAEACELNEQAGSQEPQEREFKIQEYYRSVKSEHDGSVSDSDSCESG
DKGADSSSESSEENPMSDPEYVETGLEPGEVCTYHMQTVKKTAKSWRHPLRKPTARAVPS
AVKQQAASDDEVIEECASEEDEPETEEWAKPLVHLWQHRKAHFQYEQEYNMTAAKNAPHC
AVCTLFMPYHQPENLEERRPEVSMGSCSLDAGSRSRPLIPEICFAYQEGPCPLNTLLEED
GSSPLVVCSSCCVQVHASCYGVSAQDVGPVWTCDRCVSEDLAAGCCLCNLRGGALKRTSD
DRWVHVMCAVGLPEVKFIDVVKRAPIDISAVPVQRYKLKCIYCRNRIKRLSGACIQCSCG
RCPTSFHVTCAHAAGVPMEPDDWPYVVFITCHRHQSRSSSAKVKVSKSELEVGQTVISKH
KNLRYYSSRITQVTAQTFYEVMFDDGSFSNDTFPEDIVSRDCALLGPPEVGETVQVKWPD
GLLYGAKYLGSNTSYMYQVEFEDGSQVLAKREDIYTLNEDLPKKVKGRLSTASSMRFQDA
FFTTQGERKRRRTPNSRFQTDYIAHISPRTFARLSETRSKAN
NT seq 4449 nt   +upstreamnt  +downstreamnt
atggcaggtgttggggcaagtgcccctgcaaaccctgcctgtaaaatcatgaccttcaga
cccaccatggaggagtttaaggatttcaaccagtacctggtttatatggagtctcaggga
gctcatcgtgctggtctggccaaggtaattccacccaagggctggaagccacgtcgcaat
tatgatgatattgatgattttgttattcaagcacctattcagcagatggtagctggccaa
tcaggactcttcacccagtacaacatccagaagaagccgctcactgtgcaagaattccgc
agactggctaacagtgacatgtactgtacaccgcgctatctgaactatgaagacctggag
aggaagtattggaagaatctgacattcgtctcgcccatatatggtgctgatgtgagcggc
acactctatgatgaggacattgaagagtggaacattggccacttgaattcagtcttggac
gtgatcgaggaggactgcggtgtgtccatccagggagtaaacacaccctatctctacttt
gggatgtggaaaaccagcttttcctggcacacagaggatatggacctctacagcattaac
tacctgcactttggcgaacccaaatcctggtatgccatccctccagaacatggaaagaga
cttgagcggcttgctataggtttctttccaaacagctttaaaagctgtgaggcgttcctg
agacacaagatgacactgatatccccctctgtactcaagaaatacagcataccatttgat
aagataacacaggaagcgggagagtttatgatcacatttccttatggttaccacgctggc
tttaaccacggcttcaactgtgctgaatccaccaatttcgccagtatccggtggatagat
tatggaaaactggctacgcagtgtacatgcagtaaggatatggtgaagatctccatggat
ccatttgttagacgatttcagccggatcgatacgagatgtggacgcaaggcaaagattca
tgctccctggatcacactctgcctacaccaagcactacaccagagctgcagagctggctt
cagagacggcgaaggaaaacaccctccaccagtctccatgcgcctcgttcatgctccaaa
cgactgaagacggtggactctgcaccggtaaagggaagcggtcgaaggagtagatcagca
gccttaactgctaaaaacaaggaagaggaagaggaagacccagtgaaacaccagaaagaa
tcacagtactcaagtgaattaaaagggcttgctggtcgacaaatgtgtgttgttaaagta
acaagagtggagagcgacttgctggcacagtctacaagacaagtcaaagaagcttcccct
gagcgactcttgacccctactctcaccaccacatccagccaaaatgaccctgatgcgggc
cacacaagctcccagacgtctttaatattggatgaaggacaagtatccaaaaacacaaac
tccaccgcccagtctgagcctgaatcaacctcagagagtgacatcattgtggatgtgact
ctaggctcagaaagaactgctgagaatcctaatcaaacattaaactgtgaatctgtctca
gaaaccattgcaccttctattcctgtgacccattcacttacactccactccactggtgct
acagttttattttcggaaagtgattcccaacaagctaaaattgaaacggaagagacagtc
attgataccttgaccgaggacagcatcgattgcggcacgtcagcactttacaaggagcaa
agctcaatcagtctagaccctgctcttcagggttcagaaccttccatgaatagaacaaac
tctgaaatccaaactacgccattttgtgaaatgcctcttctaatgcccgagctcattgaa
gagagagtcaatcctcagtgtctcgcacctgaaatgccctcgctgactctcgctatccga
ccggactccgcaaatcatcaaccttacaacagtgcacccatcctccatttggaaaaatca
cactcacctcctgttataacggatgaagtgagaggttgttctgaaagagtttgtccggat
tggccctttattttaccaaaagaaggtgtgagccaatcacataagtcaatctcagacagc
ttcaaagcaaaaccaacatctgcttcctttgctccacaatgggggacgccagaggagtcc
aaacaagaaggaaatatacacaaatgcacatcaacagaccagaccactcaacatgaatcc
gtttcgaactgtacaacccctactcgcagtattttgcaaagttctgcaacaacacgcatg
gattttatagactctaaaatgattgaaggagtgggcaaagaaacttctcgatgtatcgaa
gagcagtccagctctctcacgtcctcccagagcaactttgcagaatccaaacccttcaca
atttggaaaaacctcagctccgataaccctgcggtgctcatcgagagtttgcagcccgag
ttggtagtaggtcttaccgcagactatgcccatgattcgttaccgtacaccatgtggtca
gagtcagggtgccaacaagaaaagttctcagattctccaaactcttcacctcacacccag
acctggaccaacctggagcccattcccatgcagtgttctgatacagaagtgtctgaaaac
gcacccttagatcttaagcaggagaacgaggaggtggaaccggctgaatcgtgcgagctg
aatgagcaggcgggctctcaggaacctcaggaaagagagtttaaaattcaggagtattac
agaagtgtgaaatcagaacacgatgggtctgtgagcgactccgattcgtgtgaatcagga
gataagggtgctgacagcagcagtgaatccagtgaggagaaccccatgagtgatccagag
tatgtggaaacgggtctggaaccaggggaagtctgtacatatcatatgcaaacggttaag
aagactgccaagagttggcgtcaccccctcagaaaacccacagcgagagcagtgcccagt
gctgtcaaacagcaggctgccagcgatgatgaggttatagaggagtgtgcgagtgaagaa
gatgagccagaaactgaggaatgggcaaaaccattagtgcatctctggcaacacagaaaa
gcccattttcagtatgaacgagaatacaacatgaccgctgcaaaaaacgctccacactgt
gctgtctgcacacttttcatgccataccatcagcctgagaacttggaggagagaaggcct
gaggtgtcaatggggtcatgttccctggacgcaggctcaagatcacgacctctgatccct
gaaatctgctttgcgtaccaggagggtccatgcccgttgaacacactactggaggaagat
ggatccagccctcttgtggtctgcagcagctgctgtgttcaagttcatgccagttgctat
ggtgtttctgctcaggatgttggcccagtgtggacttgtgaccggtgtgtgagtgaagat
ctggcagctggatgttgtttgtgcaacctgaggggaggtgcattaaaaagaacctcagat
gacagatgggtccatgtcatgtgtgcggtggggctccctgaggtgaagttcattgatgtg
gtgaaaagagctcctattgacatcagtgccgtacctgtacagagatataaacttaagtgt
atttattgccgtaacaggataaaacggctgtctggagcttgtattcagtgctcgtgtggc
cgttgcccgacctcgttccatgtcacctgtgctcatgcagctggagtgcccatggagcct
gatgattggccgtatgtggtcttcatcacctgtcacagacaccagtcacggagctccagt
gctaaagtaaaagttagcaaaagcgaattagaagtgggccagacggtgatctccaaacac
aaaaacctccggtactacagctcacgtattactcaggtcacggcccagacattttacgag
gtcatgttcgatgacggctccttcagcaatgatacattccctgaagacattgtgagcaga
gactgtgctttgcttggccctcctgaagttggggagacagttcaggtgaagtggcctgat
ggacttttatatggagccaaatatcttggctcgaacacttcatatatgtatcaggtggag
tttgaagatggatcccaagtattggcaaagcgagaggacatttacacactcaatgaagac
ctgcccaaaaaagtcaaaggtcgtttgtccacggcatccagcatgcgtttccaggatgca
ttcttcaccacacaaggtgaaaggaaaagacgacgcacaccgaattctcgattccagacg
gattacattgcccatatcagtcctcgaacctttgccaggttgtcagaaacccgcagtaaa
gccaactaa

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