KEGG   Danio rerio (zebrafish): 570199
Entry
570199            CDS       T01004                                 
Symbol
med16
Name
(RefSeq) mediator of RNA polymerase II transcription subunit 16
  KO
K15159  mediator of RNA polymerase II transcription subunit 16
Organism
dre  Danio rerio (zebrafish)
Brite
KEGG Orthology (KO) [BR:dre00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:dre03021]
    570199 (med16)
Transcription machinery [BR:dre03021]
 Eukaryotic type
  RNA polymerase II system
   Mediator complex
    Tail
     570199 (med16)
SSDB
Motif
Pfam: Med16_bridge Med16_N Med16_C WD40 Beta-prop_WDR3_1st ANAPC4_WD40 Beta-prop_IFT140_1st Beta-prop_THOC3 WD40_WDHD1_1st WD40_CDC20-Fz Beta-prop_WDR5 Beta-prop_WDR35_TULP_N Beta-prop_IFT122_1st Beta-prop_EML_2 WD40_Prp19 DUF2018 DSE1_N Beta-prop_NUP159_NUP214 ASA1
Other DBs
NCBI-GeneID: 570199
NCBI-ProteinID: NP_001186801
ZFIN: ZDB-GENE-090306-4
Ensembl: ENSDARG00000040779
UniProt: A0A2R8Q3Q1
LinkDB
Position
11:14601692..14641084
AA seq 833 aa
MMDIAYVCEWEKRPKSNHCPSIPLVCAWSCRNLIAFTTDLKNEEDDKDLSHMIHIIDTDH
PWDVYSINSGHNEIISCLEWDQSGSRLLSADGDGQIKCWGMTEHLVNSWECAQSSSVDGD
PIVALSWLHNGVKLALHVEKSGSTNFGEKFSRVKFSPSLTLFGGKPMEGWLAVTVSGLVT
VSLLKPNGTLLTASESLCRLRGRVALADIAFTGGGNIVVAATDGSSSSPVQFYKVCVSVV
NEKCRIDTELLPSLFMRCTTDPLRRDKYPAVTHLKFLTRENSEQVLLCASSQMGSIVECW
SLRKEGLPVNNIFQHRSPVVGEKQPMTLKWRILSTTNDLDRVSAVALPKLPISISNTDLK
VASDTKFFPGLGLALAFHDGSIQILHRLSLQTVGMFYGSSGSSQRVGEEPAIKRQRAGGP
MLHFKALQFSWTSLALVGIDNHGKLHMFRVSPSMGQMLDMNTLLRHLLFLLEYCMVTGYD
WWDVLLHAQPGMVHNLLEKLHEEYMRQNQALQQVLSTRIVAVKASLCKLSSATAARACDF
HAKLLLIAISSTLKSLLRPHVLNTPDKSPGDRLSEICAKNTDTDIDKVMINLKTEEFVLD
GPPLQSLQQLIQWVGDFVLYLLANLPNQGSIVRPGFGFLRDGASLGMLREMLVMIRIWGL
LKPGCLPIYTATSDNQDSMFLLFRLLTKLWLCSRDESHPQDPDETLIDECCLLPSQLLVP
SMDWLPINDGVITKIQGKHQLRLQFGKPYTLPGVNPNAQVEIFRSPASQRVDHLRCLHLG
ISPTEDSKACTRCGCVTMLRSPNKTNATRQWEQRWIKNCLCGGLWRRIPSTLS
NT seq 2502 nt   +upstreamnt  +downstreamnt
atgatggatatcgcatatgtttgcgagtgggagaagagacccaagagcaaccactgtcct
tcaatccctctggtgtgcgcctggtcatgtagaaacctcatcgctttcaccactgacctg
aagaatgaggaggatgacaaagatctcagtcatatgatacacatcattgacactgatcac
ccctgggatgtgtactccatcaattctggtcacaatgagataatttcctgcctagaatgg
gatcagtctggttcgaggttgttgtctgctgatggtgatggtcagatcaagtgttggggc
atgacagagcacctggtgaacagctgggagtgcgcacagagcagctcagtggacggagac
cctattgtagcactttcatggttacacaatggagtcaaactcgccctgcatgttgaaaag
tctggctcaacgaactttggagagaaattttcccgggttaagttttccccgtctctgacg
ttatttggtggaaaacccatggagggatggttagcagtgacagtgagcggcctggtgact
gtgtccttattaaagccaaatgggactttgttgacagccagtgagagcctgtgcagactg
aggggtcgtgtggccctagcagacatcgcctttactggtggtgggaatatagtcgtggcg
gccacagatggcagcagctcctctccggtgcagttctataaagtgtgtgtgagtgtggtg
aatgagaagtgccgcatcgacactgagctccttccctcactgttcatgcgctgcaccacc
gacccattgcggagagacaagtaccctgctgtcacacaccttaaattcctcacgcgagag
aactcagaacaggtcctgctctgtgcatctagtcagatgggcagcattgttgagtgctgg
tccttgcgcaaggagggtctccctgttaacaatatctttcaacaccgatcaccagtggta
ggtgaaaagcagccaatgactctaaagtggcgaatcctctcaacgaccaatgatctggac
agagtgtctgctgtcgctctgcctaaacttccaatctccatctcaaacactgatctcaaa
gttgcctctgatactaagttcttcccaggcctcggtcttgccttggcattccatgatggc
agtatccagattctccatcgcctttccctccaaacagtgggaatgttctatggttcctct
ggttcctcccagcgcgttggagaagaacctgccattaaacgccagagagccggaggccca
atgctgcacttcaaagcccttcagttctcttggacatctttagctctggtgggcatagac
aatcatggcaagttgcacatgtttcgagtgtccccatccatgggccaaatgttggacatg
aacaccctcctgcgccatttactgtttctcctggagtactgcatggtaacaggatatgac
tggtgggacgtgctgcttcatgcacagcctggcatggttcataaccttctggagaagctt
catgaggaatacatgagacaaaaccaagcactgcagcaggttttgtccacccgtatagta
gcagtgaaggcatctctgtgtaagctgtcatctgccactgcagcaagagcatgtgacttc
catgcaaaactgctcctcattgccatcagctccacgctgaagtcgttactgagacctcat
gtgcttaacaccccggataaaagtcctggagacagactgtctgagatctgtgccaaaaac
actgacactgacattgataaggtgatgatcaacctgaagacagaggagtttgttctggat
ggaccacccctccagtcccttcagcagcttattcagtgggtcggagactttgttctgtac
ctgctggccaaccttcccaaccagggctccattgtgcgtccagggtttgggttcttgcgt
gacggtgcgtctctgggcatgctaagagagatgctggtgatgatccgtatttggggcctt
ctgaaaccaggctgtttgcccatttacacagccacatctgacaaccaggacagcatgttt
ctgctcttccgcctgctcaccaaactctggctctgctctcgagatgagagtcacccgcag
gaccctgatgagacattgattgatgagtgctgtctgttgcccagtcagctccttgtaccc
agcatggactggctgcccatcaatgatggtgtcattactaagatccagggcaaacaccag
ctcagattgcagttcggcaaaccgtacaccctgcctggggtcaaccccaatgcacaagtg
gagattttcagaagtccagcgtcacagagagtggatcacctgcgatgtttacatctgggc
atctctccaaccgaggatagcaaagcttgcacaaggtgcggctgtgtcaccatgttaaga
tctccaaataaaacaaatgccacgagacaatgggagcagcgttggatcaagaactgtctg
tgtggaggtctctggagaagaatcccctccacattaagctaa

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