KEGG   Danio rerio (zebrafish): 570858
Entry
570858            CDS       T01004                                 
Symbol
sympk
Name
(RefSeq) symplekin isoform X2
  KO
K06100  symplekin
Organism
dre  Danio rerio (zebrafish)
Pathway
dre03015  mRNA surveillance pathway
dre04530  Tight junction
Brite
KEGG Orthology (KO) [BR:dre00001]
 09120 Genetic Information Processing
  09122 Translation
   03015 mRNA surveillance pathway
    570858 (sympk)
 09140 Cellular Processes
  09144 Cellular community - eukaryotes
   04530 Tight junction
    570858 (sympk)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:dre03021]
    570858 (sympk)
   03019 Messenger RNA biogenesis [BR:dre03019]
    570858 (sympk)
Transcription machinery [BR:dre03021]
 Eukaryotic type
  RNA polymerase II system
   Other transcription-related factors
    Transcription termination factor
     570858 (sympk)
Messenger RNA biogenesis [BR:dre03019]
 Eukaryotic type
  mRNA processing factors
   3' end processing
    Cleavage stimulation factor (CSTF) complex
     570858 (sympk)
    U7-dependent histone pre-mRNA processing factors
     570858 (sympk)
SSDB
Motif
Pfam: Symplekin_C SYMPK_PTA1_N PDS5 HEAT_MROH2B_C Cohesin_HEAT
Other DBs
NCBI-GeneID: 570858
NCBI-ProteinID: XP_005165630
ZFIN: ZDB-GENE-060526-361
Ensembl: ENSDARG00000059553
UniProt: A2CET0
LinkDB
Position
5:67773691..67802037
AA seq 1247 aa
MMAGEQASGASSQIHSNEEDKAFDMTTSERVVDLLNQAALISTEEKLIVLKQVQELVINK
DPSLLDNFLDEIIAFQTDKSIEVRKFVIGFIEEACKRDNELLLRLIANLNMLMRDESVNV
VKKAILTLTQLYKVALQWLVRTKSVTDMQEACWDMVTQMKGDVLALLDSDNDGVRTHAIK
FTESLIITLSPRTPDSDTPKKQEGDISLDKIPKDHTYIRYDTLCEEGKTALDQLLKFMVH
PAISSINLTTALGSLATLARQRPMFMSEVVQAYEMLHANLPPTLAKSQVSSVRKNLKLHL
VAVLKHPSSVDFHVQISTLLQDLGMSPSEITRCTPVAVQPRKRLHHEPYVEGKRIKMEAV
EDDEDKEEPAPVVTPKPSSSIGTQSAIDLTAEFLLPLLTSDNVANLVLISMVYLPEVMPA
SFQATYTPVESAGTDAQIKHLARLMATQMTAAGLGPGLEQCKARDEEVKEEGAAGESSSK
DPLIIRKLSAVSLGQAISVVGASAAYKSPIIEEAPQIKKLPEPILPSTQLKAPGASGRKK
VFKLADVVQPFSEVQIEKLANMAIKRILYSEKAIAQTGMSHVRVKLLARLVTQFEGTKKN
DLLQFVLEDMRSRSELAFSLLYHEYNEYLSQEPSGCLDSYEHCLFTLLSGLQERPEQRDG
LFTKIVLEAPIITDSALEVIQRYCEDESRVYLGMSTLKELIFKRPSRQYQYLNVLLNLTS
HEKEKVRSTALSFIKRMYEKEHLKDCIEKFALTYMQFLVHPNPPSLLFGAGEDTEVAAPW
TEETVRQCLYLYLSLLPLNHRLVHELAAVYTEAIADIKRSVLRVIEQPIRGMGMNSPDLL
LLVENCPKGAETLVTRCLHILTDKVPPSPELVERVRDLYHKRVPDVRFLIPVINGLEKNE
VIQALPKLIKLNPIVVKEVFNRLLGTQHSEGSSSMSPLTPGELLIALHNIDSSKCDMKSI
IKATNLCFGEKNVYTSEVLAVVMQQLMEQTPLPILLMRTVIQSLTMYPRLAGFVMNILAR
LILKQVWKYPKVWEGFVKCCQRTKPQSYNVLLQLPPPQLASVFERCPEMREPLLQHVHSF
TPHQQAHIPTSIMTVLEATNRKPEPEPQPEIQHPEVMEEREVPLPKHISVHAPVQQAEPP
APKPIVFTEPMPPQEKHHHHHQVPSRREVAEVAEPMEQEETAHVPEEDTSEAPPQMDVSE
EAPQSSPVAEKADESMDESTAGPADEAEEPVEEPEEEHAETGESSAD
NT seq 3744 nt   +upstreamnt  +downstreamnt
atgatggctggagaacaagcttctggtgcatcttcacagatccacagcaatgaggaagat
aaagcctttgacatgaccaccagcgaaagggtggtggatctgctgaaccaggcggctctc
atctctactgaagaaaagctcattgttctcaaacaggtacaggagttggttatcaacaaa
gacccgtcgttgcttgataatttcctggatgaaattatcgcatttcagacggataaatcc
attgaagtgcgaaagtttgtgattggattcattgaggaggcatgtaaaagagacaatgag
cttctgctgcggctgattgccaacctgaacatgctgatgcgagatgagagcgtgaacgtg
gtgaaaaaggccattctgacactcactcagctctacaaagtggctttacagtggctggtg
cgcactaagagtgtcacagacatgcaggaggcatgctgggatatggtaactcaaatgaaa
ggggatgtcctggcgttgcttgattcagataacgatggagtccgcactcacgccatcaaa
ttcacagagtccctcatcatcactctgtcacctcgaacgcccgactctgacacacccaag
aagcaggagggcgacataagcctggataaaatccccaaagaccacacatatattcgatac
gacacattatgtgaggagggtaagacggctctggatcagctgttaaagttcatggttcac
cctgccatctccagcattaatctcaccactgcactgggatcactggccacactggctaga
cagcggcctatgttcatgtccgaggtggtgcaggcctatgagatgctacatgctaacttg
cctccaactctggctaagtctcaagtgagcagtgtccgcaagaacctgaagcttcacctg
gtggcagtgctgaagcatcccagcagtgtggacttccatgttcagatctccaccctgctg
caggacctgggcatgtctccgagcgaaatcacccgctgcacgccagtcgccgtacagccc
cgtaagagactccaccacgagccctatgtggagggcaagaggatcaagatggaggctgtg
gaggatgatgaggataaggaggaaccggctccagtcgtcaccccaaaaccatcctcctcc
atcggcacccagtcagccattgatctcactgctgagttcctgttacctttgctgacatca
gacaatgtggccaacctggtgctcatcagtatggtttacctccctgaagtgatgccagcc
tctttccaggccacttacacgccagtagaatcggctggcactgatgcccagattaaacat
ttagccaggctgatggccacacagatgactgcagctggactgggaccagggctggagcag
tgtaaggctcgagatgaggaggtgaaagaagagggagcagcaggagagtccagctccaaa
gacccactcattatccgtaagctgtctgcggtgtctctcggtcaagccatctcagtggtc
ggagcatcggcagcctacaagagccccatcattgaagaggctcctcagattaagaagctt
ccagagcccatcctgcccagcacacagctcaaagcccccggtgccagtggcagaaaaaaa
gtgttcaaattggcagatgtggtgcagccgttttcagaagttcagattgagaaactcgcc
aacatggccatcaagcgaatcctttactctgagaaggccattgcgcagactgggatgtcc
catgtcagagtgaagctgcttgcacggttggtgacccagtttgagggtacaaagaaaaac
gatttgctgcagtttgtcctggaggatatgcggagcagaagtgagctggccttctctctg
ttgtaccacgaatacaatgaatacttgagtcaggaaccttcaggctgtctggacagctac
gagcactgtctgttcacactgctgtccggcctgcaggagagacctgagcagagggacggg
cttttcaccaagattgtgttggaggctccgatcatcacagattcagcactggaggtcatt
cagcgatactgtgaggacgagtcacgtgtttacctgggcatgtccacattaaaggagctc
atcttcaaacggccctccagacagtaccagtacctcaatgtcctgctgaatctcacctct
catgaaaaagaaaaggtgcggtcgactgctcttagcttcatcaagcgcatgtacgagaag
gaacatctgaaggactgcattgagaaattcgctctcacctacatgcagtttctggtccat
cccaaccccccatctcttctgttcggagctggagaagatacagaggtggcagctccctgg
acggaggagacggtgcgccagtgtctttacctctacctctccctcctgcccctcaaccat
cgtctggtgcatgaactggctgccgtctacaccgaggctatcgctgacatcaagcgcagt
gtgctgcgggtcatcgagcagcctataagaggaatgggaatgaactctcccgacctgctg
ctcctggtggagaactgtcctaaaggagcagaaacactggtcactcgctgtctgcacata
cttacagataaagtgccgccatctcctgaattggtggagagggtgagggatctttatcac
aaacgagtgccagatgttcgtttcctcatcccagtcatcaacggtctggagaagaatgaa
gtgattcaggctctgcctaaactcatcaagctcaatcctatcgtggtgaaggaggtgttc
aacagactgctgggcactcaacacagtgaaggcagttcctccatgtctccactcactcct
ggagagctgctcatcgccttacacaacattgactcctctaagtgtgacatgaagtcaatc
attaaagccaccaacctgtgttttggggagaagaacgtgtacacgtctgaggtgctggct
gtggtgatgcagcagctgatggagcagacgcctctccccattctgctaatgcgcaccgtc
atccagtccctcaccatgtaccctcgcctggctggcttcgtcatgaacatcttagcccga
ctcatcctcaaacaggtgtggaagtatccgaaagtgtgggagggttttgttaagtgctgc
cagcgcaccaaaccccagtcctacaacgttctcctccagctgccgcctccacagctggcg
agtgtgttcgagcgctgcccggagatgagagagcctctcctgcagcacgtccactccttc
actcctcaccagcaagctcacattccaacctccataatgaccgtcctggaagccaccaac
aggaaaccagagcctgagccacaacctgaaatacaacatccagaagtaatggaagagcga
gaggtaccattaccaaagcatatatcagtgcatgcaccagtacaacaagcagaaccccca
gccccaaaacccatagtgtttactgagccaatgccaccacaagaaaaacaccaccaccac
caccaggtcccatccagacgggaagtagcagaagtagcagagcccatggagcaggaagag
acggcccatgttccagaggaggacacatctgaagcaccaccacagatggatgtgtccgag
gaggctccacagtccagcccggtagcagaaaaggcagatgaaagcatggacgagtcgact
gcaggacctgcagacgaggctgaagaacccgtagaagagccagaggaagagcatgcagaa
actggagaaagcagtgcagactga

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