Danio rerio (zebrafish): 571031
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Entry
571031 CDS
T01004
Symbol
arhgef12b
Name
(RefSeq) rho guanine nucleotide exchange factor 12 isoform X1
KO
K07532
Rho guanine nucleotide exchange factor 12
Organism
dre
Danio rerio (zebrafish)
Pathway
dre04270
Vascular smooth muscle contraction
dre04625
C-type lectin receptor signaling pathway
dre04810
Regulation of actin cytoskeleton
Brite
KEGG Orthology (KO) [BR:
dre00001
]
09140 Cellular Processes
09142 Cell motility
04810 Regulation of actin cytoskeleton
571031 (arhgef12b)
09150 Organismal Systems
09151 Immune system
04625 C-type lectin receptor signaling pathway
571031 (arhgef12b)
09153 Circulatory system
04270 Vascular smooth muscle contraction
571031 (arhgef12b)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
dre04131
]
571031 (arhgef12b)
Membrane trafficking [BR:
dre04131
]
Others
Rho GTPase associated proteins
Rho guanine nucleotide exchange factors (GEFs)
571031 (arhgef12b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RGS-like
PH_16
RhoGEF
PDZ
PDZ_6
PDZ_2
SOS1_NGEF_PH
Pept_S41_N_bact
Motif
Other DBs
NCBI-GeneID:
571031
NCBI-ProteinID:
XP_009300160
ZFIN:
ZDB-GENE-070705-36
Ensembl:
ENSDARG00000100913
UniProt:
A0A8M3ASS4
LinkDB
All DBs
Position
5:complement(64558648..64693768)
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AA seq
1422 aa
AA seq
DB search
MSGTQSTLAERFPKKASRTGSILSKDHPPDKKAKSDKASVPLSHEFDPTGLVQRCVIIQK
DENGFGLTVSGDNPVFVQLVKEDGAAMRAGVQTGDRIIKVNGTLVTHSNHVEVVKLIKSG
SYVALTVLGRPPGLPQIPLSDGEGEEGSPFSLSSPHSPGPIGPERSCSSPSPSERKAASL
PVWGITEDYRNPTSKLLKEIQDIPQNQNQEQLSKPTGQDESISPRPGEGELEDFSGDVDR
PPSWQGDAGTEPLWTNNNMTPVTPCLFPESPCQRETPCHSPKTTPRDSLNSCPSPDAEDT
PDLDSQSSVGSPCSRPVAHIIGAEDEDFGKEQEQMNGQCSCFQSIDLLKSRPAHLAAFIH
HVVSQFDPAPLLCYLYADLYKQSSTKETRRILMDTFFIDKTANLKVTVPESIIADLERTA
HSTNAERKRPEQMSEDVHRQYVQQLQDTLLTDVQKNLEDFRHKRSMGLTLAEAELARLDT
ERMRDRVALEKERSCAEHILSKIEEVLLTSQATEEDKCSTMQFVILSYMKQLGVKVKELR
GLDHKPKLMNPFHKIKKSMKPEKDGIEEKAKKTRFPNVFPQRRPSKIDALSQPKQRTPKP
QLPLGTGEQADGSSLPVRSSQSSEGSDGTNALITSPPYSAPAGQGTDAISRETETGGLPS
SALPKLGEGTVSGDLQDSSSTNTHFDFSNCMLEHLQEEEAETEKTQDSGTPRPDRSRMDP
LGSGEVQSEDDQCVEAELEPPNWQTLVSRDVLSTLTPQEIKRQEVINELFYTERAHLRMM
KVLENLFYQPLIRDAILPPADIKNIFSNLEEIVQLHLSLTEQMAAVRKKNETALIDSIGD
DLLSWFSEEEEDKIKRAVGTYCSNQPFALELIKSKQKKDQRFNAFIQETESNRHCRRLQL
KDIIPVETLRLTKYPLLLENIAKYTEDSEERSKVKRAGECCRKILTHVNQEVKEAENKQR
LEDYQRRLDLSSLKQSENPMIAEFKSLDLTKRKMVHEGPLSWKVNKDKTIELYTLLLEDI
LVLLQRQDEKLILKCHSKNLAGTAETKHIFSPIIKLSTVMVRSVATDNRSFFVLSMSDNG
AQIYELMAQTVSEQKTWQCLITQRADCMKTKLHNIIPLPQTDGEREEVEMINSGVQKLSK
DTEPITLASIQSPVEKDDTEVIPTPIPSTNPFENKSDEEAEEEEENSLQDQAEDDEAFVV
ADLSDRLTFLKQRSRLGIAIDEDEAEVFELQPLIADEALRTLATLRQLLINQFSGQEDTD
RENKSEDQQEHIEMTCPQQGSDDSAAIQSPLENGSDRGENPQELPSGDTGFFETSEDCVS
AGSYMVLEVFAGSGESSTDDDAQGCSVEPVAGGDSGIDLKKLLSSSSQSTGGPNINRQIM
THLRLLQGNLQQLKETEIKYNQLRQRLSEETATDTEENKDKS
NT seq
4269 nt
NT seq
+upstream
nt +downstream
nt
atgagcggcacacagtccacgcttgctgagaggtttcccaaaaaagcgagcaggacagga
agtattctcagcaaggaccatcccccagataaaaaggccaaaagcgacaaggcgtcagtc
cccctctcgcatgagtttgaccccacagggcttgtgcagcgttgtgttatcatccagaaa
gatgagaatggctttgggctgacagtgagcggcgataaccctgtgtttgtacagcttgta
aaagaggatggagctgccatgcgagctggtgttcagactggtgaccggatcataaaggtc
aatgggacgttagttacacattcaaatcatgtagaagttgtaaagctaataaaatcgggc
tcgtatgtggccctgacggtgctggggagaccgcctggcttgcctcagattcccctgtca
gacggcgagggggaagaagggtctccgttctcgctcagttctcctcactccccagggccc
atcggaccagagcgctcctgttcctcccccagcccctcagagcgaaaagcagcctctctg
cctgtatggggcataacagaggactacagaaaccctacatctaaactactgaaggaaatc
caggacattccacagaaccagaaccaagagcagctcagcaaacccactggacaggatgaa
tccatatctccgagaccaggtgaaggagagctggaggattttagtggagatgtggatcga
cccccttcctggcagggtgatgctgggacggagccattatggaccaacaataacatgact
ccagttactccttgtcttttcccagagagcccatgccaaagagagaccccctgccacagc
ccaaagaccacacctcgagacagcctcaactcctgtccctcgccggatgcagaagacaca
cctgacctagattctcagtcaagtgtagggagcccttgctctcgtcctgtagcacatatc
atcggtgctgaggatgaagactttggcaaagagcaggaacagatgaatggccagtgtagc
tgttttcagagcatagacctcctgaaatctcgacctgctcacctggcagctttcatccat
cacgtagtctctcagtttgaccctgcaccgctgctctgctacctctacgctgatctttac
aaacaatccagcaccaaagagacacgacgaatcctcatggataccttcttcatagacaaa
acagctaatttgaaagtaacagtacctgaatccatcatcgctgacctggagaggaccgca
cactcaaccaatgcagagcggaagaggccggagcaaatgtctgaagatgtacaccgacaa
tatgtgcaacaactgcaggacactcttctaactgacgttcagaagaacctagaagacttt
aggcacaagcgcagtatgggtctgacattggctgaagctgaactggcccgtctggataca
gagagaatgagagatcgtgtggctttggaaaaagagcgatcctgtgcagagcacatcctt
tctaagatagaagaagtcctattgacgtcacaagccacagaggaagataagtgtagcacc
atgcaatttgtgatactatcgtatatgaaacagctcggtgtgaaagtgaaggagttgcga
gggctggaccacaaacccaagttaatgaatccattccacaaaataaagaaaagtatgaag
cctgagaaggatggaattgaggagaaagcgaagaaaacacgatttcctaatgtctttcct
cagagacgaccaagcaagattgacgctttatcacagccgaagcagcgtacgccaaagcct
cagctgcctctgggaactggagagcaggcagacgggtcgtctcttcctgtacggagcagt
cagtccagcgagggctcagatggcaccaatgccctgatcacatcaccgccttacagcgct
ccagcaggacagggcacagacgccatcagccgagagactgagactgggggacttccctct
tctgccctgcccaaattgggagagggtactgtctcaggggatttgcaggactcctcatct
acaaacactcactttgacttcagcaattgcatgctggagcatttacaggaggaagaagct
gagactgaaaagacgcaggactctggcacccccaggcctgacaggagcaggatggatccg
ctgggctctggagaggtgcagagtgaagatgatcagtgtgttgaagccgaactcgagcct
ccaaactggcagacactagtgagcagagacgtcctgtccacactcactcctcaggaaatt
aagagacaagaagtcatcaatgagctgttctacacggagcgagcacaccttcgaatgatg
aaggttctggagaatttattttaccagccgctgatcagagatgccatccttcctcctgca
gacatcaaaaacatcttcagcaacctggaggagatcgttcagctgcacttgtctttaacc
gaacaaatggccgccgtacggaagaagaacgagaccgctctcattgactcaataggagat
gatctgctttcctggttcagtgaagaagaggaggataagatcaagagagcggtgggcacc
tactgcagtaaccagcccttcgccctggagctcatcaagagcaaacagaagaaagaccag
cgcttcaatgccttcatacaggagacagagagcaaccgtcattgtcgcaggctgcagttg
aaagacattattcctgtggagacgttacgactcacaaagtatcctcttctgctggagaac
atcgccaaatacacagaggactctgaggagagaagtaaagtgaaacgggctggcgaatgc
tgtagaaagatcctcactcacgtcaaccaggaggtgaaggaagccgaaaacaagcagagg
ctggaggactaccagagaagactggacctgtcctcactgaagcagagcgaaaaccccatg
atagcagagttcaagagcttggacttgaccaagaggaagatggtgcacgaggggccgctg
tcctggaaggtcaacaaagacaaaaccattgagctgtacacgttgctgctggaggatata
ttggtgctacttcaaaggcaggatgagaagctgatcttaaaatgccacagtaagaatctg
gcgggcaccgctgagaccaaacacatcttcagccccatcatcaagctcagcactgtgatg
gtgcgctccgttgccaccgacaacaggtcgttctttgtgctgtcgatgtctgataatgga
gcccagatctatgagctgatggcccagaccgtatcagagcaaaagacgtggcagtgtcta
atcacacaaagagcagactgcatgaagaccaaactacacaacatcattccattacctcag
accgatggggaacgtgaagaggtggagatgatcaactctggtgttcagaagctaagcaaa
gacactgaaccgattactttagcgagcatccagtctccagtagaaaaagacgacactgag
gtcatcccaaccccaatacccagcaccaacccctttgagaacaaatctgatgaggaggct
gaagaagaggaggaaaactctctacaggaccaggctgaagacgatgaagcgtttgttgtg
gcagatctgagcgatcgactgacgttcctgaaacagcgctccagactcggcatcgccatc
gatgaggacgaggccgaagtcttcgagctgcagccgctcatagctgatgaagctctcagg
acattggcgacattgaggcaactcctgatcaaccagttttccggtcaggaggacacagac
agagagaacaagagtgaagatcaacaggagcatatagagatgacgtgccctcagcagggc
tcagacgacagcgctgccatccagtctccgcttgagaacggctcagacagaggagagaat
ccacaggaactaccatccggggacaccggcttctttgagacgtctgaagattgtgtgtct
gcaggcagttatatggtgctggaggtgtttgcgggctcaggagagagcagcacagatgac
gatgcgcagggctgcagtgtggagcctgtggctggtggagattcaggcatcgacttgaag
aagctcctgtcttcatcttctcaaagcactggaggacccaacatcaacagacagatcatg
acacacttacgtctactacagggcaacctgcagcagctgaaggagaccgaaatcaagtat
aaccagctacgccaaaggctatcagaggaaacagctactgacacagaggaaaacaaagat
aaaagttag
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integrated database retrieval system
