Danio rerio (zebrafish): 606498
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Entry
606498 CDS
T01004
Symbol
pabpc1a
Name
(RefSeq) polyadenylate-binding protein 1A
KO
K13126
polyadenylate-binding protein
Organism
dre
Danio rerio (zebrafish)
Pathway
dre03015
mRNA surveillance pathway
dre03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
dre00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
606498 (pabpc1a)
09123 Folding, sorting and degradation
03018 RNA degradation
606498 (pabpc1a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dre03019
]
606498 (pabpc1a)
03041 Spliceosome [BR:
dre03041
]
606498 (pabpc1a)
Messenger RNA biogenesis [BR:
dre03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
606498 (pabpc1a)
mRNA cycle factors
Stress granule specific factors
606498 (pabpc1a)
Spliceosome [BR:
dre03041
]
Complex C
Other components
Complex C specific factors
606498 (pabpc1a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
PABP
RRM_5
RRM_7
Nup35_RRM
RRM_3
YflT
Motif
Other DBs
NCBI-GeneID:
606498
NCBI-ProteinID:
NP_001026846
ZFIN:
ZDB-GENE-030131-3238
Ensembl:
ENSDARG00000017219
UniProt:
F1QB54
LinkDB
All DBs
Position
16:54829263..54851248
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AA seq
634 aa
AA seq
DB search
MNPSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMMTRRSLGYAYVNFQ
QPADAERALDTMNFDVIKGRPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFS
AFGNILSCKVVCDENGSKGYGFVHFETHEAAERAIEKMNGMLLNDRKVFVGRFKSRKERE
AEMGARAKEFTNVYIKNFGEDMDDEKLKEIFCKYGPALSIRVMTDDSGKSKGFGFVSFER
HEDAQRAVDEMNGKEMNGKQVYVGRAQKKGERQTELKRKFEQMKQDRMTRYQGVNLYVKN
LDDGLDDERLRKEFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVAT
KPLYVALAQRKEERQAHLTSQYMQRMASVRAVPNPVLNPYQPAPPSGYFMAAIPQAQNRA
AYYPTSQLAQLRPSPRWATQGVRPQHFQNMPNAAVRPSAPRPQTFNPVRPASQVPRMMTS
QRMGSQAMGPRPAAAGAATGPAQVRGVPQYKYAPGVRNPQQRMPTQPQVPMQQPAVHVQG
QEPLTASMLAAAPPQEQKQMLGERLFPLIQNMHPSLAGKITGMLLEIDNSELLHMLESPE
SLRSKVDEAVAVLQAHQAKEAAQKSVPSPAVPAV
NT seq
1905 nt
NT seq
+upstream
nt +downstream
nt
atgaaccccagcgcgcccagttacccgatggcctccctgtatgtgggcgatctacacccg
gacgtgacggaagcgatgctctatgagaagttcagtccggcgggacccattctgtctatc
cgggtgtgcagagacatgatgacccgccgctcgctaggttatgcctatgtcaacttccag
cagcccgcagacgccgagcgtgctctggacaccatgaactttgacgtgatcaagggtcgc
cccgtgcgcatcatgtggagtcagagagacccgtcgctgaggaagagcggtgtgggtaac
atcttcatcaaaaacctcgacaaatccatcgataacaaggcgctgtacgacaccttctcc
gccttcgggaacatcttgtcctgcaaggtggtgtgtgatgagaacggctccaaaggatac
ggctttgtgcactttgagacccacgaggccgcagaaagagccatcgagaaaatgaacggc
atgttgctcaatgaccgcaaagtgtttgtgggtcgcttcaaatcccgtaaggagcgcgag
gcagagatgggcgcccgtgcaaaagagttcaccaacgtttacatcaagaacttcggggag
gacatggatgacgagaagctgaaggagatcttctgcaaatacggtccagcgctgagcatc
cgcgttatgactgacgacagcggcaaatccaaaggttttggtttcgtgagcttcgagaga
catgaggatgcacagagagctgtggatgagatgaatgggaaagagatgaacgggaagcag
gtttatgtgggccgagcgcagaagaagggagaacggcagacagagctcaagcgcaagttt
gagcagatgaagcaggaccgcatgacgcgctaccagggagtcaatctgtatgtgaagaat
ctggatgatggtttggatgacgaacgcctgaggaaggagttttcaccattcggcaccatc
accagtgctaaggtgatgatggagggcggccgcagtaaaggcttcggcttcgtctgcttc
tcgtctcctgaggaagccactaaagccgtgactgagatgaacggtcgtatcgtggccact
aagccgctgtacgtagcattggctcagaggaaagaggagcggcaggcgcatctcaccagc
cagtacatgcagaggatggccagcgtcagagccgtccccaatcccgtcctcaacccctac
cagccagcaccgccctcgggatacttcatggctgctattccacaggctcagaatcgtgct
gcttattatcccaccagtcagctggcgcagctccgccccagtcctcgctgggccactcag
ggtgtccgccctcagcatttccagaatatgccgaacgccgctgtcaggccgtctgctccc
cgtccacagaccttcaatccggtgcgtccggcctcacaggtcccacgcatgatgacgtct
cagaggatgggttctcaggcgatgggtcctcgcccagccgccgctggagccgccacagga
ccggcacaggtcagaggtgtcccgcagtacaaatatgctcctggagtccgaaacccacag
cagcgcatgcccacacagccacaggtgcccatgcagcagcctgcggtccacgttcagggt
caggagcctctgactgcctccatgttggctgcagctcctcctcaggaacagaagcagatg
ctgggtgagcgcctgttcccgctcatccagaacatgcatcccagtctggctggaaaaatc
actggaatgttgctggaaatcgacaattcagaactgctgcacatgctggagtccccggag
tctctgaggtcaaaggtggatgaagcagtagcagtgctgcaggctcaccaggccaaagaa
gcagcacagaaatcagtgcccagtcctgctgtgcccgccgtctaa
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