Danio rerio (zebrafish): 641491
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Entry
641491 CDS
T01004
Symbol
taf5
Name
(RefSeq) transcription initiation factor TFIID subunit 5
KO
K03130
transcription initiation factor TFIID subunit 5
Organism
dre
Danio rerio (zebrafish)
Pathway
dre03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
dre00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
641491 (taf5)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
dre03021
]
641491 (taf5)
03036 Chromosome and associated proteins [BR:
dre03036
]
641491 (taf5)
Transcription machinery [BR:
dre03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIID
641491 (taf5)
Coactivators
SAGA/TFTC/STAGA complex
641491 (taf5)
Chromosome and associated proteins [BR:
dre03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
PCAF complex
641491 (taf5)
STAGA complex
641491 (taf5)
TFTC complex
641491 (taf5)
SAGA complex
641491 (taf5)
SLIK complex
641491 (taf5)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
WD40_Prp19
WD40_CDC20-Fz
WD40_WDHD1_1st
TFIID_NTD2
Beta-prop_CAF1B_HIR1
Beta-prop_TEP1_2nd
Beta-prop_EML_2
WD40_MABP1-WDR62_2nd
EIF3I
Beta-prop_WDR90_POC16_2nd
Beta-prop_EML
WDR55
WD40_MABP1-WDR62_1st
NBCH_WD40
ANAPC4_WD40
Beta-prop_WDR75_1st
Beta-prop_SCAP
Beta-prop_RIG_2nd
Beta-prop_IFT122_1st
Beta-prop_TEP1_C
WDR90_beta-prop_4th
Beta-prop_Vps41
Beta-prop_IFT140_1st
Beta-prop_EIPR1
Beta-prop_HPS5
Beta-prop_DCAF4
Beta-prop_SPT8
WD40_RFWD3
Beta-prop_WDR19_1st
Beta-prop_DCAF12
WD_LRWD1
Beta-prop_Nup120_160
WD40_like
PEP5_VPS11_N
VPS8_N
PROPPIN
Beta-prop_WDR11_2nd
Motif
Other DBs
NCBI-GeneID:
641491
NCBI-ProteinID:
NP_001032508
ZFIN:
ZDB-GENE-051120-180
Ensembl:
ENSDARG00000018325
UniProt:
Q32PW4
LinkDB
All DBs
Position
1:52728187..52745367
Genome browser
AA seq
743 aa
AA seq
DB search
MAAVQDGPMEVDAEKETKPEILSDGTANPSGNTGGGTLSSSPLTAAPAAGAPKPEDQQTL
LAVLQFLKRSKLAESVEILRREAGLAEELEDSHTDAGAGGKDGDAGDTKTLLSRVSIAGA
AAPQSTLTPIPAKSGDDQPDVSVVLSAYSQQGDPSLYKVYYSDLKKFIESVLDCHRAELS
QLFYPLFVHMYLELVYNNHESEAKAFFDKFSGDQECYYEDDLRVLCGLTKKEHMKGNEAL
LDFRTSRFVLRISRDSYQLLKRHLQERQNNQIWNIIQEHLYIDIFDGMPRSKSQIDSMSG
SLAGEARREVNKVKVFYGLLKEPEIEVPLDDEDEEAENEEGKPKKKKTKKDSMGSKSKKQ
DPNAPQQNRIPLPELKDSDKLDKIMYMKESTKRIRLGPETLPSICFYTFLNAYQGLTAVD
FTDDSSLIAGGFADSTVRVWSVTPKKLRKVKSAADLNLIDKESDDVLERIMDEKTSSESK
ILHGHSGPVYGVSFSPDRNYLLSSSEDGTIRLWSLQTFTCLVGYKGHNYPVWDTQFSPFG
YYFVSGGHDRVARLWATDHYQPLRIFAGHLADVTCTRFHPNSNYVATGSSDRTVRLWDVL
NGNCVRIFTGHKGPIHSLAFSPNGKFLASGSTDGRVLLWDIGHGLMIAELKGHTGTIYAL
KFSRDGEIIASGSIDNTVRLWDVMRAIDDVETDDFTAATGHIHLPDNSQELLLGTYHSKS
TAVIHLHFTRRNLLLAAGSYNSQ
NT seq
2232 nt
NT seq
+upstream
nt +downstream
nt
atggcggctgtgcaggatggaccgatggaggtggacgcagagaaagagacaaaacccgaa
atcctcagcgatgggacggcaaatccgtcggggaacaccggcggcgggactctgtcctca
tcgccactcaccgcagccccggccgccggagccccgaagccggaggaccagcaaactctg
ctcgcggtgctgcagttcctgaagcgaagtaaactggcggaatcggtggagatcctgcgg
cgggaggctggtttagcagaggagctggaggactcgcataccgacgccggtgcaggaggg
aaggacggagacgcaggagatacaaaaactctgctcagccgtgtgtccatcgccggtgca
gccgccccgcagagcacactcacccccatacctgcgaagagtggagacgaccagccggat
gtcagtgtggtgttgtcagcgtacagccagcagggtgacccgtctctgtataaggtgtat
tacagtgacttgaagaagttcattgagtcggtgctggactgtcaccgggcagagctctcg
cagctcttctaccctctgttcgtccacatgtacctggagctggtctacaacaaccacgag
agcgaagccaaggctttctttgataagttcagcggagatcaggagtgttactatgaggat
gacctgcgggttctctgcggactcactaagaaagagcacatgaaggggaacgaggctctg
ctggattttcggacgagtcgcttcgtgctgcgcatctccagagactcgtaccagctgctg
aagagacacttacaggagaggcagaacaaccaaatatggaacatcattcaggagcacttg
tacatcgacatctttgacggcatgccgcgcagcaagagccagatcgacagcatgtccggc
agtctcgcaggagaggcccgacgagaagtcaataaagtcaaggtattctatgggctgctg
aaggaaccagagatcgaggtcccgctagatgatgaggatgaggaagcagagaatgaagaa
gggaagccaaagaagaagaagactaaaaaggacagcatgggctccaagagtaaaaaacaa
gaccccaacgcccctcaacagaacaggatccctctgccagagctgaaggactcggataaa
ctggacaaaatcatgtacatgaaggagagcaccaaaagaatccgcctcggcccggaaacc
ctgccctccatctgcttctacacattcctcaacgcctaccagggcttgacagcagtagat
ttcaccgatgactcaagtctgatagcggggggctttgcagactctacagtccgcgtgtgg
agcgtcacacccaaaaaactacgcaaagtcaaatctgctgcagacctgaatttgattgat
aaagagtcagatgatgttctagagaggatcatggatgagaagacgtccagcgagtctaag
atcctccatggtcacagtgggccagtgtatggggtcagcttcagcccagacaggaactat
ctgttgtccagctctgaggacggtacaatccgactatggagcctgcagacgtttacttgt
cttgtagggtataaaggacacaattatccagtgtgggacactcagttctcaccattcggc
tactactttgtgtctggaggacatgacagagtggcaaggctctgggcgacggatcattac
cagcctttacggatatttgctggtcatctcgcagacgtcacctgcacacgattccatccc
aactccaactatgtggccacgggctcgtccgaccgcaccgtacgactctgggacgtcctg
aatggaaactgtgttcgcattttcacaggtcacaaggggcccatccattctctggcgttc
tcccctaatgggaagttcctggcctctggatccaccgacgggagagttttgctgtgggat
attggacacgggctgatgatcgcagagttgaagggtcacaccggcactatttatgccctc
aagttcagcagagatggagaaatcattgcatcaggctctatagacaacaccgtccgactg
tgggacgtcatgagagccatcgatgacgtagaaacagacgacttcactgcagcaacgggc
cacattcacctgccggacaattctcaggagctgctgctggggacgtaccatagcaaatcc
acagccgtcatacacctgcacttcaccagacgcaacctgctcctggccgcaggctcctac
aactcccagtga
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