Danio rerio (zebrafish): 64275
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Entry
64275 CDS
T01004
Symbol
supt5h
Name
(RefSeq) transcription elongation factor SPT5
KO
K15172
transcription elongation factor SPT5
Organism
dre
Danio rerio (zebrafish)
Pathway
dre03250
Viral life cycle - HIV-1
Brite
KEGG Orthology (KO) [BR:
dre00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03250 Viral life cycle - HIV-1
64275 (supt5h)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
dre03021
]
64275 (supt5h)
03019 Messenger RNA biogenesis [BR:
dre03019
]
64275 (supt5h)
Transcription machinery [BR:
dre03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription elongation factors
64275 (supt5h)
RNA polymerase I system
64275 (supt5h)
Messenger RNA biogenesis [BR:
dre03019
]
Eukaryotic type
mRNA processing factors
3' end processing
DRB sensitivity inducing factor (DSIF) complex
64275 (supt5h)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
KOW4_SPT5
KOW
KOW5_SPT5
KOW7_SPT5
KOW2_Spt5
Spt5-NGN
KOW6_SPT5
KOWx_SPT5
Spt5_N
KOW1_SPT5
GPKOW_C
DUF3912
DUF150_C
Ribonuc_P_40
Arabino_trans_N
Motif
Other DBs
NCBI-GeneID:
64275
NCBI-ProteinID:
NP_571748
ZFIN:
ZDB-GENE-001207-1
Ensembl:
ENSDARG00000042724
UniProt:
A0A8M1P6F8
LinkDB
All DBs
Position
15:20364605..20395252
Genome browser
AA seq
1084 aa
AA seq
DB search
MSDSEDSDFSDNQSERSSEAEEVEENEEEEEQGSVAGSDKAEEEGEDLEDEEEYDEEEEE
DDDRPRKKARHGGFILDEADVDDEYEDEDPWEDGAEDILEKEEAEVSNLDHVVLDEDHSG
SRRLQNLWRDSREEALGEYYMRKYAKSSGGEHFYGGSEDLSDDITQQQLLPGVKDPNLWT
VKCKIGEERATAISLMRKFVAYQCTDTPLQIKSVVAPEHVKGYIYVEAYKQTHVKAAIEG
VGNLRMGFWNQQMVPIKEMTDVLKVVKEVTNLKPKSWVRLKRGLYKDDIAQVDYVEPSQN
TISLKMIPRIDLDRIKARMSMKDWFAKRKKFKRPPQRLFDAEKIRSLGGEVSHDGDFMIF
EANRYSRKGFLFKSFAMSAVITEGVKPTLSELEKFEDQPEGIDLEVVTETTGKEREHNLQ
AGDNVEVCEGELINLQGKILSVDGNKITIMPKHEDLKDPLEFPAHELRKYFRMGDHVKVI
AGRYEGDTGLIVRVEENFVILFSDLTMHELKVLPRDLQLCSETASGVDAGGQHEWGELVQ
LDPQTVGVIVRLERETFQVLNMHGKVLTVRHQAVNRRKDNRFAVALDSEQNNIHVKDIVK
VIDGPHSGREGEIRHIFRGFAFLHCKKLVENGGMFVCKARHLVLAGGSKPRDVTNFTVGG
FAPMSPRISSPMHPGGGGQPQRGGGGGGGGGMGRGRGRRDNDLIGQTVRISQGPYKGYIG
VVKDATESTARVELHSTCQTISVDRQRLTTVGGKERQGRSSTHLRTPMYGSQTPIYGTGS
RTPMYGSQTPLHDGSRTPHYGSQTPLHDGSRTPGQSGAWDPNNPNTPSRPDDEYEFAYDD
EPSPSPQGYGGTPNPQTPGYPEVPSPQVNPQYNPQTPGTPAMYNTEQYSPYAAPSPQGSY
QPSPSPQSYHQVAPSPVGYQNTHSPASYHPTPSPMAYQASPSPSPVGYSPMTPGAPSPGG
YNPHTPGSNIDQASNDWVTTDIMVRVKDTFLDGGVINQTGIIRSVTGGMCSVFLQDTEKV
VSISSEHLEPVTPTKNNKVKVILGEDREATGVLLSIDGEDGIVRMELDEQLKILNLRFLG
KLEV
NT seq
3255 nt
NT seq
+upstream
nt +downstream
nt
atgtcagacagcgaggacagtgatttctctgataatcagagtgagaggagcagcgaggct
gaagaggtggaggagaatgaggaagaggaagaacagggaagtgtagccggcagtgacaag
gctgaggaagagggagaggatttggaagatgaggaggaatatgatgaagaggaagaggag
gatgacgaccgacctcggaagaaagctcggcatggtggcttcatcttggatgaagccgat
gttgatgatgagtatgaagatgaagatccatgggaggatggtgctgaagacatcttagaa
aaagaagaggctgaagtgtccaaccttgaccatgtagttctggatgaggatcactcgggt
tcaaggaggttgcagaatctctggagagattctcgtgaggaagctctgggggagtattac
atgaggaaatatgccaagtcttcaggaggcgaacacttctatggtgggtctgaggatctt
tctgatgacatcacacagcaacaattgcttcctggggtcaaggatcctaatttgtggact
gttaagtgtaagattggagaggagagagcaactgcaatttccttgatgcgaaaattcgtt
gcttatcagtgcactgacacgccacttcaaatcaaatcagtagttgcccctgaacatgtc
aaaggttatatctatgtggaggcgtacaagcagacccatgtcaaggctgccattgagggt
gtgggaaacctgcgcatgggcttctggaaccagcagatggtgcccattaaagagatgaca
gatgtgctgaaagtggttaaggaagtgactaaccttaaacccaagtcttgggttcgtctc
aagagaggcctttataaagatgacattgcccaggtggactatgttgaacctagtcagaac
acgatttcgttgaaaatgattcctcgtattgacctggatcgtatcaaagcaaggatgagt
atgaaagactggtttgcaaagagaaagaagttcaagaggcccccacagaggctttttgat
gctgaaaagatcaggtctcttggtggtgaggtcagccatgatggtgatttcatgatattt
gaagcgaaccgctacagcagaaagggtttcctgttcaaaagctttgccatgtctgctgtg
atcacagaaggggtgaagcccactctgtccgagctggagaagtttgaagaccagccagag
ggcattgaccttgaagtagtcacagaaacaacaggtaaggagcgagaacacaatctccag
gcgggagataatgtggaggtgtgtgaaggggagttgatcaaccttcagggcaaaatcctg
agtgtggatggcaacaaaatcaccatcatgcccaagcacgaggacctcaaggatcctctt
gagtttccagctcatgagttgcggaagtattttcgtatgggtgaccatgtgaaggtcatc
gcggggcgttatgaaggggatacaggcctcatagttcgcgtggaggagaactttgtcatt
ctgttctctgacctcaccatgcacgagttgaaagttttgccccgggacctgcagctgtgc
tctgagacggcttcaggtgtggatgctggaggccagcatgagtggggggagctggtacag
ttagaccctcaaactgtaggtgtcattgtcaggctggagagagagacctttcaggttctg
aacatgcatgggaaagttttaacagtacggcaccaggcagtgaacaggcggaaggacaac
cggtttgctgtcgctctcgactctgagcaaaacaacatccatgttaaggatattgtgaaa
gtcattgatggacctcattcgggccgtgaaggtgaaattcgccacatcttcagaggcttt
gcttttcttcactgcaagaagctggttgaaaacggaggcatgtttgtttgtaaagcacgt
caccttgtactggcaggtggctctaagcccagagatgtgaccaattttacagtgggtggc
tttgctcccatgagcccacgcatcagcagcccaatgcaccctggaggaggtggtcagccg
caaagaggtggaggtggtggtggtggtggtggcatgggccgaggccgtggacgacgagac
aatgatctcattggccagactgttcgtatatcccagggaccatacaaaggctacattggt
gtggtgaaggatgccacagaatccaccgctagggtagagctccactcaacctgccagacc
atctctgtggatcgccagcgccttacaactgttggtggcaaagaaagacaaggaagaagt
tccacccatctacgaaccccgatgtatggttcccagacacccatttatgggactggctca
cgtactcccatgtatggtagccagacacccctccatgatggaagtcgtactcctcactat
ggctcacagactcctcttcatgatgggagcaggacacctggccaaagtggtgcgtgggac
cccaacaatccaaacacaccatcacggcctgatgacgagtatgagtttgcctacgatgac
gaaccctcgccgtctcctcaaggctatggtgggacacccaaccctcagacacctggatat
ccagaagtgccctctccgcaggtcaaccctcagtataacccacagactcctgggactcct
gccatgtacaacacagagcaatactccccatatgcagcaccttcaccccagggctcctac
cagcccagtccaagtccacagagttaccaccaagtggcgccaagcccggtgggataccaa
aacacacactcgcctgccagttaccaccccactccatcacccatggcttaccaggccagt
ccaagtcccagtccggtagggtatagtcccatgactcctggcgctccgtctcctgggggt
tacaaccctcacacccctggctccaacattgaccaagcctccaatgactgggtcaccaca
gacatcatggtgcgtgtgaaagacacattccttgatggaggcgtcatcaatcagaccggc
atcatccgcagtgtcaccggaggaatgtgctctgtttttctgcaagacactgaaaaggtt
gttagcatttcaagcgaacacttggagcctgttacaccaaccaaaaacaataaggtgaag
gtgattctgggagaggacagggaggccacaggagtcctgcttagtatcgatggtgaagac
ggcattgttagaatggagttggacgagcagctgaagattctcaatctccgcttccttggg
aaactggaagtgtga
DBGET
integrated database retrieval system
