Danio rerio (zebrafish): 790924
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Entry
790924 CDS
T01004
Symbol
usp39
Name
(RefSeq) ubiquitin carboxyl-terminal hydrolase 39
KO
K12847
U4/U6.U5 tri-snRNP-associated protein 2
Organism
dre
Danio rerio (zebrafish)
Pathway
dre03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
dre00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
790924 (usp39)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
dre03041
]
790924 (usp39)
Spliceosome [BR:
dre03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP specific factors
790924 (usp39)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UCH
zf-UBP
UCH_1
zf-UBP_var
Motif
Other DBs
NCBI-GeneID:
790924
NCBI-ProteinID:
NP_001073539
ZFIN:
ZDB-GENE-030131-966
Ensembl:
ENSDARG00000041908
UniProt:
A1A5Z2
LinkDB
All DBs
Position
5:68826531..68843111
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AA seq
497 aa
AA seq
DB search
MIRGVKRERDFDEDEEEEVRVKVGRGYVEDRRSRHCPYLDTINRSVLDFDFEKLCSISLS
HINVYACLICGKYFQGRGQKSHAYIHSVQVAHHVFLNLHTLKFYCLPDNYEIIDSSLEDI
TYVLKPTFTKQHISGLDKQGKLYRAYDGTTYLPGIVGLNNIKANDYANVVLQALSNVPPL
RNYFLEEENYRGIRRPPGDIMFLLVQRFGELMRKLWNPRNFKAHVSPHEMLQAVVLCSKK
TFQITKQGDAVDFLSWFLNALHGALGGTKKKSSIITKAFQGSMRIFSKKLPHPDLPPEEK
EALLLKEEYQEEMSESTFLYLTLDLPTAPLYKDEKEQLIIPQVPLFNILGKFNGNTEKEY
KTYKENFLKRFQLTKLPPYLIFCIKRFTKNNFFVEKNPTIVNFPITNVDLREYLTEEAQV
TEKNTTYDLVANVVHDGKPTEGSYRIHVLHHGTGKWYELQDLQVIDILPQMITLSEAYIQ
IWKRQDKQDGAKSHTGA
NT seq
1494 nt
NT seq
+upstream
nt +downstream
nt
atgatcagaggcgtgaaacgggagagggattttgatgaagacgaagaggaagaagtgcgt
gtgaaagtgggtcgcggttatgttgaagatcgcagaagccgccattgtccatatctggac
acaatcaacaggagtgttttggattttgactttgagaagctttgttcaatctctctctca
cacattaatgtctacgcctgtctgatctgtgggaaatatttccagggtcgaggtcagaag
tctcacgcgtacatccacagtgttcaggtcgcacaccatgttttcctcaatctccacacg
ttaaagttctactgcctgccagacaactacgaaatcattgactcctcattggaggacatt
acatatgtgctgaaacccacgttcaccaaacagcacatctccggattggataagcaggga
aagctgtacagagcctatgacggcactacttacctgccgggaattgtgggtctcaataat
attaaggctaatgactacgctaatgtagtattgcaggcgctgtcgaacgtgccaccttta
cgaaattactttctcgaggaggaaaactaccgtggcattcgccgtccaccaggcgacatc
atgtttctgctggtgcagcggttcggggagctcatgcgcaaactctggaacccgcgaaac
tttaaagcccacgtgtcaccgcatgagatgctgcaggccgtggtgttatgcagtaaaaag
acctttcagatcactaaacaaggtgacgctgtggactttctctcctggttcctgaatgca
ttgcatggtgctcttggtggaacaaagaagaaatcctccatcatcaccaaggcatttcag
gggtccatgcgaatcttctcaaagaaacttccccatccagacttgcctccagaggagaaa
gaagctcttctgctgaaggaggagtatcaggaggagatgtcggagtccaccttcctctac
ctgaccctggatctgcccaccgcaccgctttacaaagacgagaaggagcagctcatcatt
cctcaggtcccgctcttcaacatcctgggaaagttcaatgggaacacagagaaggagtac
aagacgtacaaagagaactttctgaaaaggttccagctcaccaagcttcctccgtacctc
atcttctgcatcaagcgattcaccaagaacaacttcttcgtggagaagaacccaactatc
gtcaacttccccatcacgaatgttgacctgcgcgagtatctgacagaagaggctcaggtc
acagagaaaaacaccacctatgacctggtggccaacgtcgtccatgatggaaaacccact
gaaggctcctacaggatccatgttctgcatcacggcacagggaaatggtatgagcttcag
gacctgcaggtgattgatattcttccccagatgatcacgctctcagaggcctacatacag
atttggaagagacaagataagcaagatggagcaaaaagccacacaggagcataa
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