Danio rerio (zebrafish): 791134
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Entry
791134 CDS
T01004
Symbol
vps8
Name
(RefSeq) vacuolar protein sorting-associated protein 8 homolog
KO
K20178
vacuolar protein sorting-associated protein 8
Organism
dre
Danio rerio (zebrafish)
Pathway
dre04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
dre00001
]
09140 Cellular Processes
09141 Transport and catabolism
04148 Efferocytosis
791134 (vps8)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
dre04131
]
791134 (vps8)
Membrane trafficking [BR:
dre04131
]
Endosome - Lysosome transport
Tethering complex
CORVET complex
791134 (vps8)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_VPS8
TPR_Vps8
VPS8_N
zf_RING_Vps8
Clathrin
Beta-prop_WDR36-Utp21_1st
TPR_Vps41
WD40_CDC20-Fz
TPR_VPS8_2
zf-RING_Vps41
zf_RING_Vps8_fungal
zf-RING_5
zf-RING_2
zf-RING_UBOX
zf-RING_11
Beta-prop_WDR5
Beta-prop_WDR3_1st
Beta-prop_THOC3
EIF3I
ANAPC4_WD40
Beta-prop_EML_2
WDR55
zf-C3HC4
zf-C3H2C3
Motif
Other DBs
NCBI-GeneID:
791134
NCBI-ProteinID:
NP_001074085
ZFIN:
ZDB-GENE-060503-348
Ensembl:
ENSDARG00000060477
UniProt:
F1QQ05
LinkDB
All DBs
Position
1:33663340..33896615
Genome browser
AA seq
1412 aa
AA seq
DB search
MAESPDCRSLVSASSQLNLMEIEAIDDKEFDIPQVDTPPTLESILNEPEDEDEPFILEDT
CLLNTENIDAHSCETSSLASSDSGDRTHLKRRRKAVETNATVHGSVLRRNVLKGISAQIV
SAADKVDAGLPTAITVSSVIAVGTSHGLALVFDQNQALRLCLGTTATGAEYGAVSALSIN
HDCTRLLCGFAKGQITMWDLANGKLLRTITDAHPPGTAILHVKFTDHPALAVCNDSGGSV
FELSFRRVMGMRTCESRCLFSGSKGEVCCVEPLHAGTELKDHPITQYSLLAMASLTKILL
IGLKPSLKVWMTFPYGKTDPASVPLLAWQFVAAQKAINPVLAFCRGDTIHFLLVKKDESG
TIHVIKQRQLQLNCDLISLSWINPRTLVLMDSTEKLRVVDRPSQEELETVDMAELQLVYN
SSHFKSLATGGNVSQALALVGEKTCYQSVCSYAGQIMYLGTKSVHIMTLRNWRERVDYLL
KQEKFMEALSLAWSFHEGTAKAVLGLFADPAKRKGVVADKMVEILLQYVERSLKKCPEHG
KIQVMEQHFQDVVPVMVDYCLLLQRTDLLFNQIYPRLVENSVARGVFLESLEPYILSERI
GCLTAPVMRDLLSYFQENGMMDSVEGCLVHMDITNLDIQQVVQMCWDNQLYDAMIYVFNS
GMNDYISPMEKLFQAIGPPLQEGKPLTDEHVVMGNKLLVYISCCLAGRAYPLGDIPEDLV
PQVKNQVFEFLIRLHSVEAAQEEEVYPYIRTLLHFDTREFLNVLALTFEDFKNDKQALEY
QQRIVDILLKVMVDNSDFTPSQVGCLFTFLARQLAKPDNTLFVNRKLFDQVLEFLCSPDD
DSRHTERQQVLLELLQVGGVVQFDEGRLLYLAEKAEFYQICEFMYEKKHLYDKIVDCYLK
DPLRKEELFNYIHNILSMPGYSAEEKHSVWVKALQHFKDLVRINAAKTAELVAVHFADEV
HSIITSLQDNYLVFQFLKCLLDPSSREGLNSQTVLKLGPDLHELLVDLLCQFSPQQVIVF
LKTSQDYRLEETIQITEKHKLHEATAYLLERKGDVQGAFQVLLQTLKGKLHKLAMESSDS
DKPDGEEEETADEVQSLLQRVEEALHDIIALCQRSSSGLNQQQREALWFPLLEAMMSPQK
LLKGADTIHTSEALKELTMKVLNSMSSFIAPPAIIQRILQDPVYGKGKLAEIQGLILGML
ETFNYEQTLLETTTNLLNSDLHWSLSHLRKAVCKGLHPRQDHCNICLQQYKRRQESEEEI
VIFSCGHLYHCQCLQRKETGVLSERQYPWSCYKCTSNQGSRPADRASAESSRSRSASLAQ
NKVTSAHRGITAEAHGRKMMTEATLDAQQTQAWDQFRTIYRGPSRLAVLTELTHSHGTER
AGLSNPAHPGTGSIYHSENFQLKLTPPPLVEE
NT seq
4239 nt
NT seq
+upstream
nt +downstream
nt
atggctgagtctccagactgtcggagtcttgtttctgcgtcgtcacagctcaatttaatg
gaaatagaggcgattgacgataaagagtttgacatccctcaagtggacacacctccgacc
ctagaaagcatccttaatgagcctgaagatgaggatgagccattcattttagaggacaca
tgtcttttgaacacagagaacattgatgcccactcgtgtgagacctcttctttggccagc
tctgacagtggagaccgaacgcatttaaagaggaggaggaaagcagtggaaactaatgct
acagtgcatggatctgttcttagacgcaatgtgctgaagggcatctcagctcagatagta
tctgctgcggataaagttgatgctggcttgccgacggcgataactgtttcaagtgtgatt
gcagtaggaacatctcatggtctggccttagtgtttgatcagaaccaggctctgcgtctg
tgtctgggcactacagcgacaggagcagaatatggtgctgtgtcggctctcagcattaat
cacgactgtacacgactgctgtgtggctttgccaaaggacaaatcaccatgtgggatttg
gccaatgggaagctgctgcggactattactgatgcccatccacctggcactgccatacta
catgtgaaattcactgaccacccagcgctggctgtgtgtaatgacagtggcggatcagtt
tttgagctgtcattcaggagggtgatggggatgaggacatgtgaatccaggtgtttattc
agtggttccaaaggtgaggtgtgctgtgttgagcctctacatgctggaactgaactcaaa
gatcatcccattacccagtactccctgctggccatggcgtcactcaccaagattctgctg
ataggactgaagccttcactcaaagtgtggatgacgtttccttacggcaagacggatcct
gcaagcgtacccttgttggcttggcagtttgtggctgcacagaaagcaatcaacccagtt
ctggctttctgtagaggagacaccatccacttcctactggttaaaaaagacgagtctggc
accatccatgtcatcaaacaaaggcagcttcaactaaactgtgacctaatcagtctgagc
tggataaacccccggacgattgtgttgatggacagcacagaaaaactgcgagtggtggac
agacccagtcaggaggagctggaaaccgtggacatggctgagcttcagctggtatacaat
agcagccatttcaaatccctcgccactggtggaaatgtcagccaagcactggctctagtt
ggagaaaagacatgttaccagtctgtttgcagctatgcgggccagattatgtatcttgga
acaaagtctgtgcacatcatgactctgaggaactggcgtgagcgtgtggactacctgttg
aagcaggagaagttcatggaggctctgtctcttgcctggtcctttcatgagggcactgcc
aaagctgtattaggtttgtttgcagaccctgctaagagaaaaggtgtggttgcagacaag
atggtggaaattttgttacagtatgtggagcgctctctgaaaaagtgtccagagcatggg
aaaatccaggtgatggagcagcactttcaggatgtggttcctgtcatggtggattattgt
cttcttctacagaggacggacctgctctttaaccagatctaccctcggctggtggagaac
tctgtagctcggggtgtttttctggagagtttggagccctacattctgagcgagcggatt
ggctgtctaactgctcctgtcatgagagacctgctcagttatttccaggagaacggcatg
atggatagtgtggagggatgcctagtccacatggacataaccaacttggacatacaacag
gtggtgcagatgtgctgggataaccagctctatgatgccatgatttacgtcttcaacagt
ggcatgaatgattacatcagcccgatggagaaactctttcaggcgattggtcctcctctg
caggaaggaaagcctctcacagatgagcatgttgtaatggggaataaactgctggtgtac
atcagctgttgtttggcaggacgtgcctatccactaggtgacattcctgaagatctggtc
cctcaggtgaaaaaccaggtgtttgagtttctcattcgtctgcactctgtggaggctgca
caggaagaggaagtgtatccctacatccgaacactcctgcactttgacactcgagagttc
ctcaacgttctggcactgacattcgaggacttcaagaatgacaaacaggctctggaatat
cagcaaaggattgtggacattttactaaaggttatggtggacaattctgacttcacccca
tctcaggtcggctgtctttttaccttcttggcgcgacaacttgccaaacctgataatacc
ctctttgttaaccggaagctgtttgaccaggtactggagtttctatgtagtccagatgat
gactctaggcatactgaaaggcagcaggtcctgctggagctgctgcaggttggcggtgtg
gtccagtttgatgaaggacgtctgctttaccttgctgagaaggcagagttttatcaaata
tgcgagtttatgtatgaaaaaaagcacctttatgacaaaattgtggactgctacctgaaa
gaccctttgagaaaggaggagctcttcaactacatccataatatcctgtccatgcctggc
tacagcgcagaggagaaacattctgtgtgggtcaaagcccttcagcacttcaaggatctg
gtccgaatcaatgcggctaagacagcagagctggtggcggtgcacttcgcagacgaggtg
cactctatcatcacatctctacaggacaattatttggtgttccagtttctgaagtgcctt
ctggaccccagctccagagagggtctgaattctcaaacagtcctgaaattgggccctgat
cttcatgagctcttagtggatcttttgtgccagttcagtcctcagcaggtcattgtcttt
cttaagacgtctcaggactacagactggaggagaccatccagatcacagagaaacacaag
ctgcatgaggccacagcctacctgctggagaggaaaggagatgtacagggagcttttcaa
gtcctgctgcagaccctgaagggcaaactccacaaacttgccatggaaagctctgactca
gacaagcctgacggtgaggaggaggagacagctgatgaagtgcagagtctgttacaaaga
gtggaggaagctctgcatgacatcattgctttgtgtcagaggagctcaagcggcctcaac
cagcagcagagagaggctttgtggtttcctctcctggaggcaatgatgtcaccacagaaa
ctactcaaaggagcagataccatacacacatcagaagcactaaaagagcttactatgaaa
gtgttaaacagcatgtccagttttattgctccacctgccatcattcagcgcatcctacag
gatcctgtatatgggaaaggaaaactggctgagatccaggggctcattttaggaatgctg
gagactttcaactatgaacagacgttgttggagaccaccacaaatctgttgaactcagat
cttcactggtctctctcacacttgcgcaaggcagtcagtaaaggtcttcatccaagacag
gaccactgcaacatctgcttacagcagtacaaaagacgacaggagagcgaggaggaaatc
gttatcttcagctgtggacacctgtaccattgccagtgtctgcagcgtaaagagacaggt
gttttgagtgagaggcagtacccatggagctgctacaaatgcacatccaatcagggctca
cggccagcggacagagccagctctgaaagctcacgatcacgctctgcttctctggcacag
aacaaagtgacatctgctcatcgtgggattacggcagaggctcatgggagaaagatgatg
gctgaagccactttggatgcccaacagacacaggcctgggatcagttccgcactatttac
agaggaccatctcggcttgctgttctgacagaactcacccattcgcatggcactgagagg
gccggtttgtcaaaccctgcccatccaggaacaggaagcatttaccacagcgagaacttt
cagttaaagctcactcctccgccactggtggaggaatag
DBGET
integrated database retrieval system
