KEGG   Danio rerio (zebrafish): 792366
Entry
792366            CDS       T01004                                 
Symbol
col15a1a
Name
(RefSeq) collagen alpha-1(XVIII) chain
Organism
dre  Danio rerio (zebrafish)
SSDB
Motif
Pfam: Collagen Endostatin Collagen_trimer Laminin_G_2
Other DBs
NCBI-GeneID: 792366
NCBI-ProteinID: XP_021326097
ZFIN: ZDB-GENE-080918-1
UniProt: A0A8M9P6B2
LinkDB
Position
24:46468..59903
AA seq 1168 aa
MFVVLYRCVCVCVAVNKASLFGLRVCVCVCEREREREPRVFIMGPEGVSSRLRVCVWIFI
AASICSAAGASLSDDVSVDQLDLTELIGVPLPPSVSFVTGLEGFPAYSFGADANVGRLAR
SFLPDPFFRDFSITVTAKATSRRGGVLFAVTDAQQRVVQLGVSLAPAEDGSQRVILYYTE
AGAERTQEAAAFKMAELTGRWASFSLSVQRGEVQLWADCERVQSATFSRSLEPLTFHSRA
GIFIGNAGATRMQSFQGLIQQLLLTSDPSAPERQCEEDDPYPVDVELSPVRAPPTEDPEL
YTDDEDLTEEEDASGDSTLMHSSTERIRSEGASQDRNVITMQKGQKGERGSPGPPGPPGP
PAPHHTDGEPGPRGPQGPTGAPGARGETGDAGRDGAPGEVGPPGFPGLAGDPGPKGEKVR
QVFCCWNIRVDHDGHDGSGSRYVDADSDTELMRVSCSPLGAAGVIRHTHCSHCCCVFQGD
SGADGQPGKDGAPGQKGEAGVPGVSGAQGEPGRPGPPGPPGPSGAPGRPFSFDMMDLEGS
GVDGGSVFRPVLPRGPPGLPGLPGPQGKEGAAGPPGVSVKGEPGAKGDHGETGAPGMPGA
QGETGQKGDTGQKGERGLDGVCLPGPPGPPGPPGPFISLQELMLNDTEGVFNISSISELQ
GAAGPRGPKGDAGAPGLHGAPGLKGQKGEPALVSGALGPQGPSGLKGDRGAPGPAGEQGP
AGPAGEKGEFGFPGRAGRPGLNGRKGEKGDSAGAPGPPGPPGPPGRPAIFNCPKGMVFPV
PPRPHCKQPVNGGFTQGDSLDNRVTAGDGEQGTRGEKGEAGMPGLPGKSGLLQGPKGESV
IGPPGHPGPRGPPGAPGLGRTGVAGPPGPPGPPGPPGQHRSGLMIPGPPGPPGPPGRAEA
SSTLLRFVSVQLMQQQVLVQDGSLAFITDSSKLYLKVPRGWREVQLGVLLESYPSAGHTL
NDAQLLFLRPQMNHKHTGQTAQPLILKPQMTSAHTIHTGQALRVAALNAPLAGDLRSASQ
LCRTQAQALGISNGFQPFLTHRTLELRDLVPAEYSSLPITNLRGDVLFKSWKSIFSNHLL
PPGVPLYSFDGRDVMSDPFWPQKAVWHGSSVGGAGLSAVSCDWWRSADLALSGQASFLYS
GLLSQHTRSCSNRFIVLCVETRPETHTL
NT seq 3507 nt   +upstreamnt  +downstreamnt
atgtttgttgtgttgtacaggtgtgtgtgtgtgtgtgttgctgtaaataaagcgagtttg
tttggactgagggtgtgtgtgtgtgtgtgtgagagagagagagagagagagcctcgggtc
ttcatcatgggtccagaaggagtttcatcacggctgagagtgtgtgtctggatcttcatc
gccgccagtatctgctctgccgccggcgcgagtctctcagacgatgtgtctgtggatcag
ctggacctgacggagctgatcggtgttcctcttcctccttcggtctccttcgtcacgggt
ttggagggttttccggcgtacagcttcggcgcggatgctaacgtgggccggctagcgcgc
tccttcctcccggacccgttcttcagggatttctccatcacggtgacggctaaagctacc
tctcggcgcggcggcgtgctgttcgccgtcacggatgcgcagcagcgggtggtgcagctg
ggggtgtcgctggcgccggcggaggacgggtcgcagcgggtcatcctctactacactgaa
gccggagccgagcgcacgcaggaggcggctgcgttcaagatggcggagctgacgggccgc
tgggccagcttcagtctgagcgtgcagcgcggcgaggtgcagctctgggccgactgcgag
cgcgtgcagagcgccaccttcagcaggagtctggagccgctcaccttccacagcagagcc
gggatattcatcgggaacgccggagcaacacgcatgcagagcttccagggcttgatccag
cagctgcttctgacctctgacccctcggcccctgagcggcagtgtgaggaggacgaccct
tacccagtagatgtggagctgagtcctgtgagagcgccacctactgaagatccagagctg
tacactgatgatgaagacctgacggaggaggaggacgcttctggagactccacactgatg
cacagctccacagagaggatcaggtcagaaggagcttctcaggaccgaaacgtcatcacc
atgcagaaaggacagaaaggagagcgagggtcacctggacctccaggacctcccggacct
ccagctccacaccacacagatggagagccggggccgcggggccctcaggggccgactgga
gctccaggagcccgcggggagacgggcgacgcaggcagagacggagctccgggagaagtc
ggacctccaggattcccaggccttgctggagatccaggacccaaaggggagaaggtacga
caggtgttctgctgctggaatatccgtgtagaccatgatggccatgacggctctggctcc
agatatgtggatgcagacagtgacactgagctcatgcgggtgagttgctctcctctcggt
gctgctggagtgatcagacacacacactgcagccactgctgctgtgtgtttcagggggac
agtggagcagacggacagcctggaaaagatggagcaccaggacagaagggtgaagctggg
gtacctggagtcagtggagcacagggtgaacccggccggccggggcctccaggacccccg
ggccccagcggagctcccggaagacccttcagcttcgacatgatggatctggagggctct
ggtgtggatggaggcagtgtgttcaggcctgtgctgcccagaggtccacctggtctgcca
ggtctgccaggaccacagggtaaagaaggagccgccggcccaccgggggtttcagtgaag
ggggagccgggagccaaaggagaccatggagaaacgggagcccctggcatgcctggagca
cagggggagacgggccagaaaggtgacacgggtcagaagggtgagagaggtctggatggg
gtttgtttacccggacctccagggcctcccgggcctccaggacccttcatcagcctgcag
gagctaatgctcaacgacactgaaggagtcttcaacatctccagcatctcggagcttcag
ggagctgcgggaccgaggggtccaaagggggatgcgggagccccaggcctgcatggagca
ccgggtctgaagggtcagaaaggagagccggctctggtgtctggagctctggggccgcag
ggaccctcaggactgaagggtgatcggggtgctccgggacctgctggagaacagggcccc
gcgggaccagctggagaaaagggcgagttcgggttccccgggcgtgcgggtcgtcctggg
ctgaatggccgtaagggagagaaaggagactccgctggtgctcctggtccccctggtcct
ccaggtcctccaggacgtcctgcaatctttaactgccctaaaggaatggtgtttccggtt
cctcctcgaccccactgcaaacagcccgttaatggtggattcacgcaaggagattctctg
gataatagagtcactgctggagatggagaacagggcaccagaggagagaaaggtgaagct
gggatgccggggttacctgggaaatctggcctgctgcaggggcctaagggagaatctgtg
attggacctcctggccatcctggacctcgaggaccccctggagcgccaggtttggggaga
acaggtgttgctggtcctccgggacccccaggaccccccggacctcccggacagcacaga
tcaggcttgatgatacctggccccccgggaccgcctggacctccgggacgagctgaggcc
tccagcactctcctcaggtttgtgagtgtgcagctgatgcagcagcaggtgcttgtgcag
gacgggtctctggccttcatcactgactccagtaaactctacctgaaggttccccggggc
tggagggaggttcagctcggtgttctgctggagtcgtacccgtccgctggacacacactg
aatgacgcgcagctgctgttcctgagacctcagatgaaccacaaacacactggacaaaca
gcacaaccgctgatcctgaagcctcagatgaccagcgcgcacaccatacacaccggacag
gcactgcgtgtggcggctctgaacgctcctctggctggagatctgcgctccgcctcgcag
ctctgccggactcaggctcaggctctgggcatcagcaacgggttccagcccttcctcaca
caccgcacgctggagctgagggacctggtgcccgccgagtacagcagcctgcccatcacc
aacctcaggggtgatgtgctattcaagagctggaagagcatcttctccaatcatcttctt
cctcctggtgttcctctgtactcctttgacggccgggacgtgatgagcgaccccttttgg
cctcagaaggcggtgtggcatggttcttcagtgggcggggctggtctgtcggctgtgagc
tgtgattggtggagatcagcagatctggccctcagtggtcaggcgtcgttcctctacagc
ggcctgctgagccaacacacacgcagctgctccaaccgcttcatcgtgctgtgtgtggag
acccggccagagacgcacacactttga

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