Danio rerio (zebrafish): 792366
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Entry
792366 CDS
T01004
Symbol
col15a1a
Name
(RefSeq) collagen alpha-1(XVIII) chain
Organism
dre
Danio rerio (zebrafish)
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Gene cluster
GFIT
Motif
Pfam:
Collagen
Endostatin
Collagen_trimer
Laminin_G_2
Motif
Other DBs
NCBI-GeneID:
792366
NCBI-ProteinID:
XP_021326097
ZFIN:
ZDB-GENE-080918-1
UniProt:
A0A8M9P6B2
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Position
24:46468..59903
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AA seq
1168 aa
AA seq
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MFVVLYRCVCVCVAVNKASLFGLRVCVCVCEREREREPRVFIMGPEGVSSRLRVCVWIFI
AASICSAAGASLSDDVSVDQLDLTELIGVPLPPSVSFVTGLEGFPAYSFGADANVGRLAR
SFLPDPFFRDFSITVTAKATSRRGGVLFAVTDAQQRVVQLGVSLAPAEDGSQRVILYYTE
AGAERTQEAAAFKMAELTGRWASFSLSVQRGEVQLWADCERVQSATFSRSLEPLTFHSRA
GIFIGNAGATRMQSFQGLIQQLLLTSDPSAPERQCEEDDPYPVDVELSPVRAPPTEDPEL
YTDDEDLTEEEDASGDSTLMHSSTERIRSEGASQDRNVITMQKGQKGERGSPGPPGPPGP
PAPHHTDGEPGPRGPQGPTGAPGARGETGDAGRDGAPGEVGPPGFPGLAGDPGPKGEKVR
QVFCCWNIRVDHDGHDGSGSRYVDADSDTELMRVSCSPLGAAGVIRHTHCSHCCCVFQGD
SGADGQPGKDGAPGQKGEAGVPGVSGAQGEPGRPGPPGPPGPSGAPGRPFSFDMMDLEGS
GVDGGSVFRPVLPRGPPGLPGLPGPQGKEGAAGPPGVSVKGEPGAKGDHGETGAPGMPGA
QGETGQKGDTGQKGERGLDGVCLPGPPGPPGPPGPFISLQELMLNDTEGVFNISSISELQ
GAAGPRGPKGDAGAPGLHGAPGLKGQKGEPALVSGALGPQGPSGLKGDRGAPGPAGEQGP
AGPAGEKGEFGFPGRAGRPGLNGRKGEKGDSAGAPGPPGPPGPPGRPAIFNCPKGMVFPV
PPRPHCKQPVNGGFTQGDSLDNRVTAGDGEQGTRGEKGEAGMPGLPGKSGLLQGPKGESV
IGPPGHPGPRGPPGAPGLGRTGVAGPPGPPGPPGPPGQHRSGLMIPGPPGPPGPPGRAEA
SSTLLRFVSVQLMQQQVLVQDGSLAFITDSSKLYLKVPRGWREVQLGVLLESYPSAGHTL
NDAQLLFLRPQMNHKHTGQTAQPLILKPQMTSAHTIHTGQALRVAALNAPLAGDLRSASQ
LCRTQAQALGISNGFQPFLTHRTLELRDLVPAEYSSLPITNLRGDVLFKSWKSIFSNHLL
PPGVPLYSFDGRDVMSDPFWPQKAVWHGSSVGGAGLSAVSCDWWRSADLALSGQASFLYS
GLLSQHTRSCSNRFIVLCVETRPETHTL
NT seq
3507 nt
NT seq
+upstream
nt +downstream
nt
atgtttgttgtgttgtacaggtgtgtgtgtgtgtgtgttgctgtaaataaagcgagtttg
tttggactgagggtgtgtgtgtgtgtgtgtgagagagagagagagagagagcctcgggtc
ttcatcatgggtccagaaggagtttcatcacggctgagagtgtgtgtctggatcttcatc
gccgccagtatctgctctgccgccggcgcgagtctctcagacgatgtgtctgtggatcag
ctggacctgacggagctgatcggtgttcctcttcctccttcggtctccttcgtcacgggt
ttggagggttttccggcgtacagcttcggcgcggatgctaacgtgggccggctagcgcgc
tccttcctcccggacccgttcttcagggatttctccatcacggtgacggctaaagctacc
tctcggcgcggcggcgtgctgttcgccgtcacggatgcgcagcagcgggtggtgcagctg
ggggtgtcgctggcgccggcggaggacgggtcgcagcgggtcatcctctactacactgaa
gccggagccgagcgcacgcaggaggcggctgcgttcaagatggcggagctgacgggccgc
tgggccagcttcagtctgagcgtgcagcgcggcgaggtgcagctctgggccgactgcgag
cgcgtgcagagcgccaccttcagcaggagtctggagccgctcaccttccacagcagagcc
gggatattcatcgggaacgccggagcaacacgcatgcagagcttccagggcttgatccag
cagctgcttctgacctctgacccctcggcccctgagcggcagtgtgaggaggacgaccct
tacccagtagatgtggagctgagtcctgtgagagcgccacctactgaagatccagagctg
tacactgatgatgaagacctgacggaggaggaggacgcttctggagactccacactgatg
cacagctccacagagaggatcaggtcagaaggagcttctcaggaccgaaacgtcatcacc
atgcagaaaggacagaaaggagagcgagggtcacctggacctccaggacctcccggacct
ccagctccacaccacacagatggagagccggggccgcggggccctcaggggccgactgga
gctccaggagcccgcggggagacgggcgacgcaggcagagacggagctccgggagaagtc
ggacctccaggattcccaggccttgctggagatccaggacccaaaggggagaaggtacga
caggtgttctgctgctggaatatccgtgtagaccatgatggccatgacggctctggctcc
agatatgtggatgcagacagtgacactgagctcatgcgggtgagttgctctcctctcggt
gctgctggagtgatcagacacacacactgcagccactgctgctgtgtgtttcagggggac
agtggagcagacggacagcctggaaaagatggagcaccaggacagaagggtgaagctggg
gtacctggagtcagtggagcacagggtgaacccggccggccggggcctccaggacccccg
ggccccagcggagctcccggaagacccttcagcttcgacatgatggatctggagggctct
ggtgtggatggaggcagtgtgttcaggcctgtgctgcccagaggtccacctggtctgcca
ggtctgccaggaccacagggtaaagaaggagccgccggcccaccgggggtttcagtgaag
ggggagccgggagccaaaggagaccatggagaaacgggagcccctggcatgcctggagca
cagggggagacgggccagaaaggtgacacgggtcagaagggtgagagaggtctggatggg
gtttgtttacccggacctccagggcctcccgggcctccaggacccttcatcagcctgcag
gagctaatgctcaacgacactgaaggagtcttcaacatctccagcatctcggagcttcag
ggagctgcgggaccgaggggtccaaagggggatgcgggagccccaggcctgcatggagca
ccgggtctgaagggtcagaaaggagagccggctctggtgtctggagctctggggccgcag
ggaccctcaggactgaagggtgatcggggtgctccgggacctgctggagaacagggcccc
gcgggaccagctggagaaaagggcgagttcgggttccccgggcgtgcgggtcgtcctggg
ctgaatggccgtaagggagagaaaggagactccgctggtgctcctggtccccctggtcct
ccaggtcctccaggacgtcctgcaatctttaactgccctaaaggaatggtgtttccggtt
cctcctcgaccccactgcaaacagcccgttaatggtggattcacgcaaggagattctctg
gataatagagtcactgctggagatggagaacagggcaccagaggagagaaaggtgaagct
gggatgccggggttacctgggaaatctggcctgctgcaggggcctaagggagaatctgtg
attggacctcctggccatcctggacctcgaggaccccctggagcgccaggtttggggaga
acaggtgttgctggtcctccgggacccccaggaccccccggacctcccggacagcacaga
tcaggcttgatgatacctggccccccgggaccgcctggacctccgggacgagctgaggcc
tccagcactctcctcaggtttgtgagtgtgcagctgatgcagcagcaggtgcttgtgcag
gacgggtctctggccttcatcactgactccagtaaactctacctgaaggttccccggggc
tggagggaggttcagctcggtgttctgctggagtcgtacccgtccgctggacacacactg
aatgacgcgcagctgctgttcctgagacctcagatgaaccacaaacacactggacaaaca
gcacaaccgctgatcctgaagcctcagatgaccagcgcgcacaccatacacaccggacag
gcactgcgtgtggcggctctgaacgctcctctggctggagatctgcgctccgcctcgcag
ctctgccggactcaggctcaggctctgggcatcagcaacgggttccagcccttcctcaca
caccgcacgctggagctgagggacctggtgcccgccgagtacagcagcctgcccatcacc
aacctcaggggtgatgtgctattcaagagctggaagagcatcttctccaatcatcttctt
cctcctggtgttcctctgtactcctttgacggccgggacgtgatgagcgaccccttttgg
cctcagaaggcggtgtggcatggttcttcagtgggcggggctggtctgtcggctgtgagc
tgtgattggtggagatcagcagatctggccctcagtggtcaggcgtcgttcctctacagc
ggcctgctgagccaacacacacgcagctgctccaaccgcttcatcgtgctgtgtgtggag
acccggccagagacgcacacactttga
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