Danio rerio (zebrafish): 792831
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Entry
792831 CDS
T01004
Symbol
pan2
Name
(RefSeq) PAN2-PAN3 deadenylation complex catalytic subunit PAN2 isoform X2
KO
K12571
PAB-dependent poly(A)-specific ribonuclease subunit 2 [EC:
3.1.13.4
]
Organism
dre
Danio rerio (zebrafish)
Pathway
dre03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
dre00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
792831 (pan2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dre03019
]
792831 (pan2)
Enzymes [BR:
dre01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
792831 (pan2)
Messenger RNA biogenesis [BR:
dre03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
792831 (pan2)
mRNA degradation factors
3'-5' decay
Pan complex
792831 (pan2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PAN2_N
UCH_1
RNase_T
UCH
WD40_like
WD40_CDC20-Fz
Motif
Other DBs
NCBI-GeneID:
792831
NCBI-ProteinID:
XP_001920000
ZFIN:
ZDB-GENE-030131-3113
Ensembl:
ENSDARG00000074675
UniProt:
E9QJN4
LinkDB
All DBs
Position
23:34922358..34950596
Genome browser
AA seq
1202 aa
AA seq
DB search
MMNFEGLDPGLGDYAPGLHGGLEPGLDSSLDPRLDPALLQGVEIDPDGLAVSESVHIVEG
MYSELHSVAAEVGIPVTATHFDLQEELLWMGNHRGHASSFFGPTMGRYSSFQVHMTDDIR
HIQSMDTGVLFLTKNNLRCLTRGGFIMFDYPMEEGADMHSLILTENNTLLMGGLQNYVAE
LDLTTVQETQKFTVEVPGVAIMRQTSRFFFCGHTSGKVSLRDLRTFKMEHEFDAFSGSLS
DFDIHGNLLAACGFSSRGLNGLSCDRFLMVYDLRMMRAVTPLQVHVDPLFLRFIPTYTSR
LAIISQTGQCQFCEPTGLASLADIFHVNTVGQLLMSFDVSSSKQALSFGDSGGCVHLWSS
APEVSYNSYSRDTELALPCLVDSLPQMDWNHELMPLSLLPMPLTSTEPLLSDWPTALIAP
SPRRAPPVDPEILRTMKTVGFIGYAPNPRTRPRNQVPYKIKDVELDYDSYNQVPESPIGR
DEEPHLYMVPKKYRKVTIKYSKLGLEDFDFKHYNRTLFAGLEPHIPNAYCNCMIQVLYFL
EPIRCLVQNHLCQKEFCLACELGFLFHMLDLSRGDPCQASNFLRAFRTIPEASALGLILA
DSDEQTGKARLGRLIQSWNRFILAQLHQETLEQEGPQAYRGASSSSVLSSSGESVISRLF
GCEVENSSLCCCGKETVRSSLTLLFTMHYPEQSSLEKKIEEYEFVDILRKSICLEQSTQA
WCDNCEKYQPTVQTRNIRCLPDVLVINCEVNSAKEAEFWKAQTEYVFNKALKKEAAEPPK
PKEPLPTEWCLEEELCNVEGLTFDTQAEDMRHVWIPLSLRMCISKAQGLEVSSLTEGEEL
TESEEAEGVSIYDLFVTVSHVQDTRTGGNMVAHIKVGETYHQRKEGVTHQQWYLFNDFLI
EPIDKAESVQFDVNWKVPAVLYYIKRNYHTKFDLRIKNPIEASVLLTEASLARKQRKSHA
TFIPLMVSEMPQVGDLVGLDAEFVTLNQEEAELRSDGTKSTIKPSQMSVARITCVRGQGQ
NEGVPFIDDYISTQEQVVDYLTQYSGIKPGDLDAKISSKHLTTLKSTYLKLRFLIDTGVR
FVGHGLQKDFRVINLMVPKDQVIDTVYLFHMPRKRMISLRFLAWYFLDLNIQGETHDSIE
DARTALQLYRKYLELSHNGGQEEFRKVLKALYEKGRKLDWKVPDIDSADGQGTAVFPSVM
GL
NT seq
3609 nt
NT seq
+upstream
nt +downstream
nt
atgatgaacttcgagggtctggacccgggtttgggcgattatgcgcctggcctgcatggt
ggcctggagcccggtctggactcttccctggacccgcggctcgacccggcgctactgcag
ggtgtggagatcgaccccgatgggctggctgtgtcagagtctgtgcacatagtggaaggc
atgtactcggagttgcacagcgtggcagctgaagtcgggatccctgtgacagccacacac
ttcgatctgcaggaggagttgctctggatggggaaccaccggggacacgcgagttccttc
tttgggccgacaatgggccgctactcgtctttccaggtgcacatgactgacgacattcgc
catatccagagtatggacacgggggtgctgttcctgaccaaaaacaacctcagatgcctc
acacgaggaggttttatcatgtttgattatccaatggaggagggtgctgacatgcacagc
ttgattcttactgaaaataacaccttgttaatgggaggcctgcagaactatgtggctgaa
ctggacctcaccacagtgcaggaaactcaaaaatttactgttgaagtgcctggtgtcgcc
atcatgagacaaactagtcgtttcttcttttgtggtcacacatctggcaaggtgtctctt
cgtgatctgcgcacgtttaaaatggagcacgagtttgatgcattctccggcagcctgtct
gatttcgacattcacggtaacctgttagcggcatgtggtttctcaagtcgcggtctgaac
gggctgtcctgtgatcggttcctcatggtgtacgatctgcgcatgatgagggccgtcacc
ccattgcaggtccacgtggaccccctattcctccgctttatccccacatacacctcccgc
ctggccatcatttcacaaacaggtcagtgtcagttctgtgagcccaccggcctggccagc
ctggctgatatcttccacgtcaacacagtgggccagctgctgatgagctttgacgtgtcc
tccagcaagcaggctctgtcattcggggactcgggcggctgtgtgcatctgtggtccagc
gcccctgaggtgtcctataacagctactctagagacacagagctggcgctgccctgcctg
gtggactcactgccgcagatggactggaaccacgagctgatgcctctgtctcttctgcca
atgcctctcaccagcactgagcctctgctgtctgactggcccaccgccctcatcgcaccc
agccccagacgagcgcctccagtagacccagagattctgaggacaatgaaaactgtggga
tttattggatacgcaccaaatcctagaacccgtcccagaaaccaggttccatataagata
aaagatgtcgagcttgactatgacagctataatcaggtgccggagtctcccattggtcga
gacgaggagccacatctttacatggtgccaaagaaatacaggaaggtgaccattaaatat
tccaaactgggactggaagactttgattttaagcactataatcggactctgtttgctggt
ctggagcctcacatacccaacgcttactgtaactgtatgatccaggttttgtacttcctg
gagcccatcaggtgtctggtacagaatcacctgtgtcagaaagagttctgcctggcctgt
gagctgggcttcctcttccacatgctggacctgagcagaggagacccctgtcaggccagt
aattttctccgggctttccggacaattcccgaggcatctgctctgggtttaatcctggct
gactccgatgagcagactgggaaagcccgtctgggccgtctaatccagagctggaaccgt
tttattcttgcacagctgcatcaggaaacgctcgagcaggaagggccgcaggcgtacaga
ggagccagcagcagcagtgtgctgagctcctcaggggagtctgtgattagccggttgttt
ggctgtgaagtggagaacagcagtctgtgttgttgtggaaaggagacggttcgctcttca
ttgacgctgctgtttaccatgcattaccccgagcagagctccctggagaagaagatagag
gaatatgaatttgtagatattctgaggaagagtatctgtctggaacagagcacacaggcc
tggtgtgacaactgtgagaagtaccagccaacagtgcagaccaggaacattcgctgtctg
cctgatgttctggtgataaactgtgaggtgaacagtgcaaaagaggcagaattctggaag
gcacagactgagtatgtgttcaacaaagctttgaagaaagaagcagccgaacctcccaaa
cctaaagagcctttacccacagaatggtgtttggaagaagagctgtgcaatgtggagggc
ttgacctttgacactcaagcagaagacatgaggcatgtgtggattcctctcagtctgagg
atgtgcatcagtaaagctcaaggcctggaggtcagcagcctaactgagggagaggagctg
actgaaagtgaagaggcagaaggagtgtccatctacgatctgtttgtcactgtgtcgcat
gtccaggacactcggactggaggaaacatggtggcgcacatcaaagtgggcgagacttat
catcagcgcaaagagggagtcacacaccagcagtggtatctgttcaatgattttctgatt
gagcccattgataaggctgaatcggttcagtttgatgtgaactggaaggttcctgctgta
ctttattacatcaagaggaactaccacaccaagtttgatttgcgcattaagaaccctatc
gaggcaagcgttctgctgacggaggcttctttagcacgaaaacagaggaagagtcacgcc
accttcatacccctcatggtgagcgaaatgccacaggttggagaccttgtcggattggat
gcagaatttgtcactctcaaccaggaagaggcagaactgcgcagcgatggaactaagtcc
actattaaacccagccagatgtctgttgctcgtatcacttgtgtgagaggccagggacaa
aatgaaggagtgccgttcattgatgactacatatctacacaggaacaggtggtagactat
ctgacccagtattctggtatcaaacctggagatttggatgcaaagatttcctcgaaacac
ctgactactctgaaatccacatatcttaaattgcggtttcttattgacactggggttcgc
tttgtcgggcacggcttacagaaggatttccgggtcataaacctgatggtcccaaaagac
caggtgatcgacactgtctacctctttcacatgcctaggaaacgaatgatctctctgcgg
ttccttgcatggtattttcttgatttgaacatccagggtgaaactcatgacagtattgaa
gatgcgcggactgctttgcagttgtacaggaagtacctagagctgagccataatggagga
caggaggagttccggaaggttctcaaggctctctatgagaaaggacgcaagctagactgg
aaagttccagacatcgattctgcagatggtcaaggcacagccgtatttccctcagtgatg
ggtttatga
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