Danio rerio (zebrafish): 794079
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Entry
794079 CDS
T01004
Symbol
pdcd11
Name
(RefSeq) protein RRP5 homolog
KO
K14792
rRNA biogenesis protein RRP5
Organism
dre
Danio rerio (zebrafish)
Brite
KEGG Orthology (KO) [BR:
dre00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
dre03009
]
794079 (pdcd11)
Ribosome biogenesis [BR:
dre03009
]
Eukaryotic type
90S particles
Other 90S particles
794079 (pdcd11)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
S1_RRP5
S1
Spt6_S1
HAT_Syf1_CNRKL1_N
HAT_PRP39_N
OB_RRP5_4th
HAT_PRP39_C
Suf
TPR_14
TPR_19
HAT_Syf1_CNRKL1_C
PPR
TPR_16
TPR_12
ARM_TT21_5th
RPN7
TPR_CcmH_CycH
TPR_15
Motif
Other DBs
NCBI-GeneID:
794079
NCBI-ProteinID:
NP_001082837
ZFIN:
ZDB-GENE-030131-4076
Ensembl:
ENSDARG00000052480
UniProt:
Q1ED11
A0A8M1NCQ8
Q502F4
LinkDB
All DBs
Position
1:49435038..49481167
Genome browser
AA seq
1816 aa
AA seq
DB search
MASMEEDFPRGGTERKKPTDLIPHEVDNLFDTPAKVVKKKKKSVKQDEAPKSKKQKVDEE
NIKLNTTTTVQILHLRDLTVGTLMLGCVKEVSDFEVVVGLPSGLVGYLPICNICDAYTNI
LNDKLDTDDGLEEVVPLSKLFTPGMLIRCVVSSLDSAKEGHISLKLSINPKDVNKALNSV
ALKPAMTLSGCVESVEDHGYLVDIGIGGTKAFLPKKSTSSKQDLYVGQYVLVLIEDVKDS
GRVVRLSQNPQALVKACAETKQGWTLDNLLPGLLIHGCVKRVTPHGLIVTFLSSFTGVVD
FLHLDEDKESTYSKGQEILARILYVQPSTRQVGLSLRSHLLPPGGAVLDLHFSERVGEVV
QGCQMTSLHHYSGALMKMLDGSRAFVHRNLLKEPKEELDTNHLMSQTQHILRIINYSPIE
QIYQATLRWSSIETPFFSCQDIKVGQIVEGTVTDLQKHGVYVRIGEHIRGMIPRIHLADV
TLKNPEKKFYPGLKVKCRVLSVEAQKKLLILTRKKALVESTLPIFQSYSDARPGRISHGF
VVCIKEFGCIVRFYEDVKGLVPMQELTTETVTNPEELFFVGQVVKVKVLKCDEEKKMLRL
SFKSVTEEDVREEQIAKFDFIVGKMVDARVCRKVLNGLEVSIIPEEVQAFLPTTHLSDHV
TNCLPLWMALEEGDTICNLMCLTNYKKKGIVLTKKPHLKAYIEDGAVPKNFSELQVGMQM
VGWVKNIMPYGVFISFPYGVFGLAPIANMGDQFIKETSGIFDIDQTVVAKVTNLDEEKQG
FLVSLKLSELSLSENEFHTRLIQGLKERRNISEMRAGRGDSDVLWKLSALTVGDQMKMIV
GDTTEDGSVMLTSDQLSGVTVLASKYHKEGVNLTPGCKLNAVILHIDFVKSQVHVSLRPK
LNIKKEELEKDARFTAKVQFADKDFAVVSLATTSDLTFFPTRPHLNSIFDSKKFSVGSCL
DVKVDDPNCEDLAGFPLISYQSSNAKHEQHKPNEERLGELMKVTVKKLKALCVLVNLPSG
NTGRVHVSQILEFPDIGSCPTSVLKVGMEMEARVIGGRAVRAHNFLAISHPDYNISIPEL
SFLESKLKVSDMVNKLEKYKPGDDIICFPSKYIKKEQLLEVHVKPDIMGAVPLLAMCNKL
GLSKHPQRLFKPGQALSAKVVSVDPKKPIQFSLSLTGTHKLEPGMNTLAMVQKIQPHKGL
MLALPYENTGLAHLTDLSDSYTEKPLESYKEGQIIRCHVIEQKIKEFNVSLRPSRLNKDK
HDIVEDPEIQSIADIKEGQSIRGYVSSVNDQGIFLRLSRTITGRVLFQNATKYYMNDPKV
LIKHVGQNALVAAKVLSVDSENLHVNLSLLSKDTGKPDLLPESLELPLRLTGEEKEKHDK
KAAVKRKRTLSESQQQDNENTEQKTKRIKVDEECRLVEEPREQKETLKEKKKKKKSKKED
SDSGVEVFFRETDETVSDKKSGKVKVKCKEQEPNRLQVTSSFPWESTLGSLTPFAPADDN
QNSSEDEEEVKSKPAKKSRKELKQEQQNTEQKPSKLEAELMDTSVRPDNSTAFERLLLSS
PDSSLLWLQYMAFHLQATQIEQARAVAERALKTISFREEQEKLNIWVAMLNLENMYGTPD
SLQKVFERAIQYCEPLLVYQQLADIYAKSEKIKEAESLYKSMVKRFRQDKAVYLSYGTFL
LRQRQSDAANALLQRALQSLSSKEHVDLIARFARLEFQFGNSEKAKSMFDKVLTTYPKRT
DLWSVFIDLMVKHGSQKEVRELFDRVIHLSVSVKKIKFFFKRYLEYEKKNGTPETIQVVK
QKALEYVESKGAEATS
NT seq
5451 nt
NT seq
+upstream
nt +downstream
nt
atggcatcgatggaagaagattttccccgcggaggtactgagaggaaaaaacccactgac
ctaatcccacatgaagtggacaatctttttgatacacctgcaaaagtggttaagaagaag
aagaagtctgtgaagcaggatgaagcgccaaaatctaaaaaacagaaagtggatgaagag
aatatcaaactcaacacgaccaccactgtccaaattctgcatcttagggacctgacggtt
ggcactctgatgctgggttgtgtgaaggaagtgtcagattttgaggttgtggtcggtctc
ccgagcggcctcgttggttacctgccgatctgcaacatctgtgacgcctacaccaacatt
ctcaatgacaaactggacactgatgatggcctagaggaagttgtccctctttccaaactc
ttcactcctggaatgctgatcagatgtgtcgtgtcgtctttagactcagccaaagagggt
catattagccttaagttgtcgatcaacccaaaagatgtgaacaaggcgttgaattcagtt
gctttaaagcctgcaatgaccctgagcggctgtgtggagagcgttgaagatcacggctac
ctggtggacatcggaattggcggcactaaagctttcctgcccaaaaagagcacatcctca
aaacaagatttgtatgtgggtcagtacgtgctggtcctgatagaggatgtcaaggatagc
gggcgtgtggtgcgcctgtctcagaatccccaggctcttgtaaaggcctgcgctgagacc
aagcaaggttggactttagacaacctcctacctggactgctgatccatggatgtgtcaag
agggtcactcctcacggacttatagtgacgtttctttcgtctttcaccggagtggttgat
tttctgcaccttgatgaggacaaggagtctacttacagcaaaggacaagagatcctggcg
cgaattctgtacgtgcagccttcgacccgtcaggtgggtctctctctgcgcagtcatctg
ctaccaccaggcggcgctgtgctggatctgcacttcagtgagcgagtgggtgaggtggtg
cagggctgtcagatgactagtttacaccattactcaggagccctgatgaagatgcttgac
ggtagcagagcctttgtgcatagaaacctgctgaaggagcccaaagaagagctcgacaca
aaccacctgatgtcccagactcagcatattctgaggatcataaattacagtccaatagag
cagatctaccaggccacgctccgctggagctctattgaaacgccgttctttagctgtcaa
gacatcaaagtgggacaaattgttgagggtacagttacagatttgcagaaacatggcgtt
tacgtgaggattggggagcacattagaggaatgatacccagaattcacctggctgatgtc
accctgaagaacccagagaaaaaattttatccgggtctgaaagtcaagtgcagggttttg
tcagtggaggctcagaagaagctgttgatcttgaccaggaagaaggcgctagtggagtcc
acgctccccatcttccagtcgtactctgacgcccggccgggccgcatttctcatggcttc
gtcgtgtgtataaaggagttcggctgcatcgttcgcttttatgaagatgtgaagggtctg
gttcccatgcaggagctgaccaccgaaacagtcacaaatccagaggagctcttcttcgtt
ggacaggttgtcaaggtcaaagtcttgaagtgcgacgaggaaaaaaagatgctccgattg
tccttcaagtctgttactgaggaggatgtcagagaggagcagatcgccaaatttgacttc
attgttggaaagatggtcgatgcaagagtgtgccgaaaagtcctgaatggtcttgaggtg
tccattattcctgaggaagtgcaagctttcctacccacaacacatctctctgatcacgtg
accaactgtttgcccctgtggatggcgctggaggaaggcgacaccatctgtaatctgatg
tgtctcaccaactacaaaaagaagggcattgttctcaccaagaaaccgcacctgaaggct
tatattgaggacggcgccgtcccgaagaacttctctgagctccaggtcgggatgcagatg
gtcggctgggtgaagaacatcatgccgtatggagtcttcatcagtttcccatacggagtc
ttcggccttgctcctatagccaacatgggtgaccagttcatcaaggaaacctcaggcatc
tttgatattgaccagacggttgttgccaaggtgactaatctggatgaagagaagcaaggg
tttctggtcagtctgaagctgtctgaactgagtctctctgagaacgagtttcacaccaga
ctgattcagggtctgaaggaaagaaggaatatttcggagatgagggctggcagaggggac
tctgacgtcctgtggaagctctctgctttaactgtaggagatcaaatgaagatgattgtg
ggagatactacagaggatggttcggtcatgctgacctcagatcagctcagtggtgtcact
gtattggcctcaaagtaccacaaagaaggtgtgaatttaactccgggctgcaaactcaac
gcagtaattctccacattgactttgtaaagtctcaagttcatgtatcgctgcgtccaaag
ctaaacataaagaaagaggagttggaaaaggacgccagatttacagcaaaagtccagttt
gccgacaaagactttgctgtcgtctcattggctaccaccagtgatctgaccttctttccc
acccgccctcatttaaacagcatttttgactcaaagaagttttccgttggctcctgtttg
gacgtgaaagtcgatgatcccaactgtgaggatttagcgggctttccacttatttcctat
cagtcttcgaatgccaaacacgagcagcacaaacccaatgaagagcgtctcggggagctg
atgaaggtcacggtgaagaaattgaaggcgctctgtgtgttggtgaatctgccgtcggga
aacactggaagagtccacgtctcacagatattggagtttcctgacatcggcagctgccca
acatcagttctcaaggtcgggatggagatggaggcccgagtaatcggagggcgtgcagtt
cgtgcccacaacttcctggcaatctctcatccagattataatatctccatccctgaactc
agttttctagaaagtaaactgaaggtttcagacatggtcaacaaactggaaaaatacaag
cctggagatgatatcatatgcttcccgtcaaaatacatcaaaaaagagcagctcttggaa
gttcatgtcaagcccgacatcatgggagccgttcctctgttagccatgtgtaacaaactt
gggctctccaaacaccctcagaggctttttaaaccaggacaggccctttccgcaaaggtt
gtcagtgttgatcccaagaagcctatccagttttccctgtcgctcacagggacgcacaaa
ctggagccaggcatgaacaccttggccatggttcagaaaatccagcctcacaagggactg
atgctcgcgctcccatatgagaacacgggtcttgctcacctaacggatctctctgattcg
tacacggagaagccactggagtcctacaaagagggccagatcatccggtgtcatgtcata
gagcaaaagataaaggaattcaacgtttcgttacgtccatccagactgaataaggacaag
catgacattgtagaagacccagaaattcagtcaattgctgatataaaagagggccagagt
atcagaggatatgtgtcgtctgttaacgaccaaggcatatttctaaggttatcaaggact
ataacaggaagagttctgttccaaaatgctacaaaatactatatgaatgacccaaaagtc
ctcatcaaacacgttggccagaatgcattggtggccgcaaaggttcttagcgtggactct
gagaacctccatgtgaacctgtcgctgctgtcaaaagacactgggaaaccagatctgctc
ccagaatctcttgaactgccactgcgtctgacaggagaggagaaggagaaacatgacaaa
aaagctgctgtcaagagaaaaagaactctatctgagagccagcagcaagacaatgagaat
actgaacagaagaccaaacggataaaggtcgatgaagaatgcagactggttgaagagccc
agagaacagaaggaaacactgaaggagaagaaaaagaaaaagaaatcgaaaaaggaggac
agtgacagtggtgtagaggtgttcttcagagagacggatgagactgtgtcggacaaaaag
tcaggcaaagtaaaggttaaatgcaaggaacaggaaccaaaccggcttcaggtgacatcc
agcttcccatgggagtccacactgggctctttaacaccttttgctccagcagacgacaac
cagaactccagtgaggatgaggaggaagtcaaaagcaagccggcgaagaagtcccgtaaa
gagctgaagcaggagcagcagaacaccgagcagaagcccagcaagctggaggccgagctc
atggacacgtctgtacggcccgataactcaacggcgtttgagcgtctgctcctgtcgtct
ccagacagctccctcctctggctgcagtacatggctttccatctacaggccacgcagatc
gagcaggcccgcgccgtcgccgagagagccctcaaaaccatctccttcagagaggagcag
gagaagctgaacatttgggtggccatgctgaatttggagaacatgtacgggacaccagac
agcttgcagaaagttttcgaacgggccatccagtactgtgaacctcttctcgtgtaccag
cagctggccgacatttatgccaagtcggaaaagatcaaagaggctgagagtctttataaa
agcatggtgaagcgcttcagacaggacaaagcagtttatctgagttacggcactttcctg
cttcgacaacggcagagcgacgctgccaatgcccttctgcagagggcgctgcagagcctg
tccagtaaagaacatgtggacctcattgccagatttgctcggctggagtttcagtttggg
aattcagagaaagccaagtctatgttcgacaaggtcctcactacataccccaaacgcaca
gacctgtggtctgtcttcatagacttaatggtgaagcatggctctcagaaggaagtgagg
gagctttttgatcgcgtgattcacctgagcgtgtcggttaagaagatcaagttcttcttc
aagcgttacttggagtacgagaagaagaacggcacacctgagaccatccaagtggtcaaa
cagaaagctctcgaatatgtggagtcaaaaggagctgaagccaccagctaa
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integrated database retrieval system
