Danio rerio (zebrafish): 795095
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Entry
795095 CDS
T01004
Symbol
hmgb1b
Name
(RefSeq) high mobility group protein B1b
KO
K10802
high mobility group protein B1
Organism
dre
Danio rerio (zebrafish)
Pathway
dre03410
Base excision repair
dre04140
Autophagy - animal
dre04217
Necroptosis
Brite
KEGG Orthology (KO) [BR:
dre00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
795095 (hmgb1b)
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
795095 (hmgb1b)
09143 Cell growth and death
04217 Necroptosis
795095 (hmgb1b)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
dre03036
]
795095 (hmgb1b)
03400 DNA repair and recombination proteins [BR:
dre03400
]
795095 (hmgb1b)
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
dre04147
]
795095 (hmgb1b)
Chromosome and associated proteins [BR:
dre03036
]
Eukaryotic type
Nucleosome assembly factors
HMG (high mobility group) proteins
795095 (hmgb1b)
DNA repair and recombination proteins [BR:
dre03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Other BER factors
795095 (hmgb1b)
MMR (mismatch excision repair)
Other MMR factors
795095 (hmgb1b)
Exosome [BR:
dre04147
]
Exosomal proteins
Exosomal proteins of colorectal cancer cells
795095 (hmgb1b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HMG_box
HMG_box_2
HMG_WDHD1
HMG_box_5
Motif
Other DBs
NCBI-GeneID:
795095
NCBI-ProteinID:
NP_001092721
ZFIN:
ZDB-GENE-030131-8480
Ensembl:
ENSDARG00000030479
UniProt:
X1WFI9
LinkDB
All DBs
Position
15:complement(31513065..31516568)
Genome browser
AA seq
197 aa
AA seq
DB search
MGKDPRKPRGKMSSYAYFVQTCREEHKKKHPEASVNFSEFSKKCSERWKTMSAKEKGKFE
DMAKQDKVRYEREMKNYIPPKGEKKKRFKDPNAPKRPPSAFFIFCGDYRPKIKGENPGLS
IGDIAKKLGEMWNSSSAEVKQPYEKKAAKLKEKYDKDIALYRTKGIAGFSKKEGGEDDEE
DEDDDEEEDDEEEEDDE
NT seq
594 nt
NT seq
+upstream
nt +downstream
nt
atgggtaaagatccaaggaagcccagaggaaagatgtcctcttatgcctactttgtgcaa
acctgtcgtgaggagcacaaaaagaagcaccctgaagccagtgtgaacttctctgaattc
tccaagaagtgttcagagcgatggaagacaatgtctgccaaagagaagggcaagtttgag
gatatggccaagcaagataaggttcgctatgagagggaaatgaagaactacatcccacca
aagggtgagaagaagaagaggtttaaggatcccaacgcacccaagagaccaccgtcagcg
ttcttcattttctgtggtgattaccgccctaagataaagggtgaaaaccctggtctgtcc
atcggcgacattgccaaaaagcttggagaaatgtggaacagctcatcagctgaagtgaag
cagccctatgaaaagaaagccgcaaagctcaaggagaagtacgacaaggatattgccctg
taccgcacaaagggaattgcaggcttttcaaagaaagaaggtggggaggatgatgaggag
gatgaagacgacgatgaggaggaggacgacgaagaggaggaggatgatgagtag
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integrated database retrieval system