KEGG   Danio rerio (zebrafish): 795095
Entry
795095            CDS       T01004                                 
Symbol
hmgb1b
Name
(RefSeq) high mobility group protein B1b
  KO
K10802  high mobility group protein B1
Organism
dre  Danio rerio (zebrafish)
Pathway
dre03410  Base excision repair
dre04140  Autophagy - animal
dre04217  Necroptosis
Brite
KEGG Orthology (KO) [BR:dre00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03410 Base excision repair
    795095 (hmgb1b)
 09140 Cellular Processes
  09141 Transport and catabolism
   04140 Autophagy - animal
    795095 (hmgb1b)
  09143 Cell growth and death
   04217 Necroptosis
    795095 (hmgb1b)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03036 Chromosome and associated proteins [BR:dre03036]
    795095 (hmgb1b)
   03400 DNA repair and recombination proteins [BR:dre03400]
    795095 (hmgb1b)
  09183 Protein families: signaling and cellular processes
   04147 Exosome [BR:dre04147]
    795095 (hmgb1b)
Chromosome and associated proteins [BR:dre03036]
 Eukaryotic type
  Nucleosome assembly factors
   HMG (high mobility group) proteins
    795095 (hmgb1b)
DNA repair and recombination proteins [BR:dre03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Other BER factors
     795095 (hmgb1b)
   MMR (mismatch excision repair)
    Other MMR factors
     795095 (hmgb1b)
Exosome [BR:dre04147]
 Exosomal proteins
  Exosomal proteins of colorectal cancer cells
   795095 (hmgb1b)
SSDB
Motif
Pfam: HMG_box HMG_box_2 HMG_WDHD1 HMG_box_5
Other DBs
NCBI-GeneID: 795095
NCBI-ProteinID: NP_001092721
ZFIN: ZDB-GENE-030131-8480
Ensembl: ENSDARG00000030479
UniProt: X1WFI9
LinkDB
Position
15:complement(31513065..31516568)
AA seq 197 aa
MGKDPRKPRGKMSSYAYFVQTCREEHKKKHPEASVNFSEFSKKCSERWKTMSAKEKGKFE
DMAKQDKVRYEREMKNYIPPKGEKKKRFKDPNAPKRPPSAFFIFCGDYRPKIKGENPGLS
IGDIAKKLGEMWNSSSAEVKQPYEKKAAKLKEKYDKDIALYRTKGIAGFSKKEGGEDDEE
DEDDDEEEDDEEEEDDE
NT seq 594 nt   +upstreamnt  +downstreamnt
atgggtaaagatccaaggaagcccagaggaaagatgtcctcttatgcctactttgtgcaa
acctgtcgtgaggagcacaaaaagaagcaccctgaagccagtgtgaacttctctgaattc
tccaagaagtgttcagagcgatggaagacaatgtctgccaaagagaagggcaagtttgag
gatatggccaagcaagataaggttcgctatgagagggaaatgaagaactacatcccacca
aagggtgagaagaagaagaggtttaaggatcccaacgcacccaagagaccaccgtcagcg
ttcttcattttctgtggtgattaccgccctaagataaagggtgaaaaccctggtctgtcc
atcggcgacattgccaaaaagcttggagaaatgtggaacagctcatcagctgaagtgaag
cagccctatgaaaagaaagccgcaaagctcaaggagaagtacgacaaggatattgccctg
taccgcacaaagggaattgcaggcttttcaaagaaagaaggtggggaggatgatgaggag
gatgaagacgacgatgaggaggaggacgacgaagaggaggaggatgatgagtag

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