Danio rerio (zebrafish): 798289
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Entry
798289 CDS
T01004
Symbol
pdzrn4
Name
(RefSeq) PDZ domain-containing RING finger protein 4
KO
K15682
ligand of Numb protein X 3/4 [EC:
2.3.2.27
]
Organism
dre
Danio rerio (zebrafish)
Brite
KEGG Orthology (KO) [BR:
dre00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
dre04121
]
798289 (pdzrn4)
Enzymes [BR:
dre01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
798289 (pdzrn4)
Ubiquitin system [BR:
dre04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Ligand of Numb proteins
798289 (pdzrn4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PDZ
PDZ_6
PDZ_2
PDZ_Tricorn
Motif
Other DBs
NCBI-GeneID:
798289
NCBI-ProteinID:
NP_001076392
ZFIN:
ZDB-GENE-041210-237
Ensembl:
ENSDARG00000045687
UniProt:
Q5TYS9
LinkDB
All DBs
Position
4:13811033..13861445
Genome browser
AA seq
788 aa
AA seq
DB search
MGCNLCTLQKREEHYKLLYEIAQVNGREFSKSGHDGTVEALRKEPIVVQVLRRGPSSVTQ
SLQEVCVVDVCTQTDITFEHIMALAKMRPSTPPVPDICPFLLSDSCHSIQTMEHEYFDCP
EYVASTQADVDRAVEFECEEVELCRMNSQEKLGLTLCYRTDDEEDTAIFVGQVELNSIAA
RDGRIREGDRILQINGRDVQNREEAVALLSNENSRSIVLLVTRPEGQMDGNWLDEDHHDF
LEELKMEILEEQKKEGILQTAGCMKLSTRQEDASTDTATCSSSILEKDSGMKCSFEESSE
HEFLSYPRTQKQLRDRWEASSHLVPMDTMQEKKGQDNRLSENGVECDHFQQLLELKCQIR
NGGECGLVYRRSSTIECSLTEQGGSGVARELHMLNEELRSIELECQSIMQAHQLRRSKHD
SPRMDKENRLRRGKLADINEHPERLQSEKLRDKDSSSAYNTAESSRSTPLGTEGSPDHSL
QRRIHLTNQRNLRSMQSPYSSPILSLPSQSSSTCSRAHTYTSSTPPLQTPITSPGSQGPS
QAFSSSLEQSPSNPSESDPALPADDERCEKERNRNRLAAARQYHSPYHTSTTTTQPPSTR
HYQSYLQLLQQHSSSSLEYSQSQLSLLSLRGRPGPSQAGRLEWKVKVRADGTRYVARRPA
RDRILRERALRIREERSGGMTTDDDAVSELKMGRYWSKEERKQQLARAREQRRRREFMQK
SRLECLRETMGTASGEVSILELSHKKMLKKRNKKILDNWMTIQELMSHGARAPEGTKVHN
AFLSVTTV
NT seq
2367 nt
NT seq
+upstream
nt +downstream
nt
atgggctgtaacctgtgcacgctgcagaagagagaggagcactacaagctgctgtacgag
atcgcacaggtgaatggtcgtgagttctcgaagtctggtcatgatgggacggtggaggcc
ctgcggaaggagccgatcgtggtgcaggttttaagacgtggcccatcgtctgtaacccag
agcctgcaggaggtttgtgtggtggacgtttgcactcagactgacatcacctttgagcac
atcatggctctggctaaaatgagaccctcgactccaccggtgccagacatctgtccattc
ctgctgtccgacagctgtcattccattcagactatggagcatgaatatttcgattgtcca
gaatatgtagccagcactcaggcagatgtggacagagcagttgagtttgagtgtgaggag
gttgagctctgtcgaatgaacagccaggaaaagctgggtttgactctgtgttaccgcact
gatgacgaggaagatacagcaatctttgttggtcaggtcgagctcaacagcatcgctgcg
agggatggacgcatcagagagggagaccggattttacagataaatggtcgtgatgtgcag
aacagggaagaagcggttgcactcctttcaaatgaaaattcaagatccatagtgttactt
gtcacaagacctgaaggacagatggatggaaactggcttgacgaggatcatcatgatttc
ctcgaagagctgaagatggagattttagaggaacagaaaaaagagggaatccttcaaaca
gcaggttgcatgaagctttctacaaggcaggaggatgcaagtacagatacagcaacatgc
tcctcctccattcttgagaaagacagtggcatgaaatgtagctttgaggaaagttctgaa
catgagtttctgtcttatccccggactcaaaaacaacttcgggacaggtgggaagcaagc
tcacatttggttcctatggacaccatgcaggagaaaaagggtcaggataacagattgagc
gaaaacggggtggaatgtgaccattttcagcaacttctagagcttaagtgccagatccgc
aatggtggagaatgcgggttagtctataggcgaagcagcactattgagtgcagcctcaca
gagcaaggtggaagtggagtggcaagggagttgcacatgctcaacgaagagctgcgcagc
attgaacttgagtgtcagagcatcatgcaagctcatcagttgcgcaggagcaagcatgac
tcacctagaatggataaggaaaatcgtctgcgacgtggcaagcttgcagatattaatgag
catcctgaaagactacaaagtgagaagctcagagataaagacagctctagtgcctacaat
acagctgaaagttcccgctcaactcccctgggaacagaaggatcacctgatcactcctta
caacgtcgaatccacttgaccaaccagaggaaccttcgaagtatgcagagtccctacagt
agccccatcttgtctttacccagccaaagtagctccacttgcagccgtgcccatacctac
accagctccacacctccattacagacccccatcaccagtcccggatcacaaggacccagc
caggccttctccagcagtttggagcaaagtcccagcaacccttcagagtcagacccagca
cttcctgctgatgatgagcgctgtgagaaagaaagaaacaggaataggttagcagcggct
cgacaatatcattcgccctaccacaccagcactacaacaacccagcctcccagcacacgc
cactaccagagttaccttcagctcctacaacaacattcctcttcctctctggaatactcc
caaagtcagcttagcctcctcagcctccgcggacggcctggaccttcgcaagctggtaga
cttgaatggaaggtcaaagtccgagcagacggaaccaggtatgtagcacgtcgtccagca
cgagatcgtatcctacgtgaacgagccttacgaataagggaggaacgcagcggcgggatg
actacggatgatgatgcagtcagcgagctgaagatggggcggtactggagcaaagaagaa
cgcaagcagcagctagccagggcaagggaacagcgacgcaggagggagttcatgcagaaa
agccgacttgagtgcctcagggaaactatggggacggcaagcggggaggtcagcatcctg
gagctcagccataagaagatgctgaagaaacgaaacaagaagatccttgacaactggatg
accattcaagaactcatgagtcatggagcacgagcacctgagggcaccaaagttcacaat
gccttcctttcagtcactacagtttag
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integrated database retrieval system
