Danio rerio (zebrafish): 799716
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Entry
799716 CDS
T01004
Symbol
smarcb1a
Name
(RefSeq) SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1-A
KO
K11648
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1
Organism
dre
Danio rerio (zebrafish)
Pathway
dre03082
ATP-dependent chromatin remodeling
dre03250
Viral life cycle - HIV-1
Brite
KEGG Orthology (KO) [BR:
dre00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
799716 (smarcb1a)
09125 Information processing in viruses
03250 Viral life cycle - HIV-1
799716 (smarcb1a)
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
dre01009
]
799716 (smarcb1a)
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
dre03021
]
799716 (smarcb1a)
03036 Chromosome and associated proteins [BR:
dre03036
]
799716 (smarcb1a)
Protein phosphatases and associated proteins [BR:
dre01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
799716 (smarcb1a)
Transcription machinery [BR:
dre03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
799716 (smarcb1a)
SWI/SNF complex
799716 (smarcb1a)
Chromosome and associated proteins [BR:
dre03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
799716 (smarcb1a)
PBAF complex
799716 (smarcb1a)
SWI/SNF complex
799716 (smarcb1a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF5
INI1_DNA-bd
DUF1679
Motif
Other DBs
NCBI-GeneID:
799716
NCBI-ProteinID:
NP_001007297
ZFIN:
ZDB-GENE-041114-5
Ensembl:
ENSDARG00000033647
UniProt:
Q5U379
LinkDB
All DBs
Position
8:complement(30929704..30944465)
Genome browser
AA seq
373 aa
AA seq
DB search
MALSKTYGQKPIKFQLEEDGDFYMIGSEVGNYLRMFRGSLYKRYPSLSRRLATVEERKKI
VASSHDHGYTTLATSVTLLKASEVEEIFDGHDEKYKAVSISTEPPAYLREQKAKRNSQWV
PTLPNSSHHLDAVPCSTTINRNRMGRDKKRTFPLCFDDHDPAVIHENASQQEVLVPIRLD
MEIDGQKLRDAFTWNMNEKLMTPEMFAEILCDDLDLSPLTFVPAIASAIRQQIESYPTDS
ILDEQMDQRVIIKLNIHVGNISLVDQFEWDMSEKENSPEKFALKLCSELGLGGEFVTTIA
YSIRGQLSWHQRTYAFSENPLPTVEIAIRNTGDADQWCPLLETLTDAEMEKKIRDQDRNT
RRMRRLANTAPAW
NT seq
1122 nt
NT seq
+upstream
nt +downstream
nt
atggctttaagcaagacatacggacagaaacccattaagttccaactggaagaagatgga
gatttttacatgattggatctgaggttggaaattacttgcgtatgttcagagggtcttta
tataagcgctacccatccctgtcgagacgactagccacagttgaggagagaaagaagata
gtagcttcctctcacgatcacggttacaccactttagccaccagtgtgacgctgctgaag
gcctcagaagtcgaggagatctttgacggacatgatgagaagtacaaggccgtgtcaatc
agtactgaacctccagcatatctcagggagcagaaagccaaaagaaacagtcaatgggtt
ccaactctccccaacagctcccatcacctggacgctgttccttgctccaccaccatcaac
cgaaaccgaatgggacgtgacaagaaaaggaccttccccctctgctttgatgatcatgac
cctgccgtcatccatgaaaacgcctctcagcaggaggtccttgtgcccatccggcttgac
atggagattgatggacagaagctgcgagacgctttcacatggaacatgaatgagaaactg
atgactccagagatgtttgctgaaattctgtgtgatgatctggacctgagcccgctgacc
tttgttccagccatcgcctcggccatcagacagcagatcgagtcctatcccacagacagt
atcctggatgagcagatggaccagagagtcatcattaaattgaacatccacgtggggaac
atctcactggtggaccagtttgaatgggacatgtctgagaaggagaactcaccagagaag
tttgccctgaagctgtgctctgagctgggtctgggtggagagttcgtcaccaccattgca
tacagcatacgcgggcagctcagctggcaccagaggacctacgccttcagtgagaatcct
ctgcccacggtggagattgccatccgaaacacaggagatgcagaccagtggtgtccactg
ctggagacactgacagacgccgagatggagaagaagatcagggaccaggacagaaacaca
aggcgaatgaggcgacttgcaaacacagccccagcatggtga
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