Devosia rhizoryzae: JI748_04045
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Entry
JI748_04045 CDS
T09886
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
drh
Devosia rhizoryzae
Pathway
drh03030
DNA replication
drh03410
Base excision repair
drh03420
Nucleotide excision repair
drh03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
drh00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
JI748_04045 (ligA)
03410 Base excision repair
JI748_04045 (ligA)
03420 Nucleotide excision repair
JI748_04045 (ligA)
03430 Mismatch repair
JI748_04045 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
drh03032
]
JI748_04045 (ligA)
03400 DNA repair and recombination proteins [BR:
drh03400
]
JI748_04045 (ligA)
Enzymes [BR:
drh01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
JI748_04045 (ligA)
DNA replication proteins [BR:
drh03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
JI748_04045 (ligA)
DNA repair and recombination proteins [BR:
drh03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
JI748_04045 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
JI748_04045 (ligA)
MMR (mismatch excision repair)
DNA ligase
JI748_04045 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
JI748_04045 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
BRCT
HHH_2
DNA_ligase_ZBD
PTCB-BRCT
Nlig-Ia
RUBY_RBDX
FdhE_central
DUF4796_N
Motif
Other DBs
NCBI-ProteinID:
QQR40191
LinkDB
All DBs
Position
808901..811114
Genome browser
AA seq
737 aa
AA seq
DB search
MSDLSQTPVSDLSEDEARSELERLAGAIAAADLAYHGKDTPEITDAEYDALRIRNAELEG
AFPELVRSDSPTGKVGAAPAEGFSKVRHAVPMLSLAKAYTDQDVLDFIERGRRFFQKDEG
LDLAFTAEPKIDGLSASLRYEHGVFVQGATRGDGSVGEDITANLRTIKDIPKRLPEGGDW
PEVIEIRGEVYMTYAEFQALKERSAAAGGQNYVNPRNTAAGSLRQKDPSITASRNLRFFA
YAWGFTSADPAPTQFEAVQKFADWGFQISPLMLRAKSAEELIAQYKLIESQRSSLGYDID
GVVYKVDQLELQRRWGFVTGEPRWAIAHKFPAEQATTTVRDIEIQVGRTGTLAPIARLDP
VSVGGVTVVNATLHNEDYIAGRDSNGLPIRDGKDIRIGDTVTIQRAGDVIPQIVDVVIEK
RPAAAEAFHMPETCPVCGSPAVREINEKTGKEDSRRRCTGELFCPAQAVESLRHFVSRGA
MDIEGLGAENIELLFSKDLVKTPADIFTLKDKRAEVQRAFAERREEQARQREAASGKARK
NVRSVEDRNYEGLDKLFAAIDARRDPELDRFIFALGIRHIGETTGAVLARTFGTIEKLQE
AGREMAAADDPMGVFPSVDGIGSTVVEALVEFFGNERNNEALAALLAQVRPKPYVVTISA
DSQVAGKTVVFTGTLEKMSRSEAKAMAERLGAKVAGSVSAKTDILVAGPGAGSKLKQAQE
HGVEVISEDEWFARVGK
NT seq
2214 nt
NT seq
+upstream
nt +downstream
nt
atgtccgacctgtctcaaacacccgtcagcgatctgtccgaagacgaagcccgctccgag
cttgagcggttggccggcgccatcgccgcggcggacctcgcctaccatggcaaggatacg
cccgagatcaccgacgccgaatacgatgccttgcgcatccggaatgccgagctggaaggc
gccttcccggaactggtccggtcggatagtcctacgggcaaggtcggcgcggcaccggca
gagggtttttccaaggttcggcacgccgtgccgatgctgagtctagccaaggcctacacc
gatcaggacgttctcgactttatcgagcgcggccgccgcttctttcagaaggacgagggg
ctggacctcgcctttaccgccgagcccaagatcgatggcctttccgcttcgctccgttac
gaacacggcgttttcgtccagggtgctacccgcggcgacggatcggtgggtgaggacatc
accgccaatctgcggaccatcaaggatattcccaaacgcctgccggaaggtggggactgg
ccggaggtgatcgaaatccgcggcgaggtctacatgacctatgccgagttccaggcgctc
aaggagcgctcagccgctgcgggtgggcagaactacgtcaatccgcgaaatacggcggcg
ggatcgcttcggcaaaaagacccgtcgattacggccagtcgcaacctgcgcttctttgcc
tatgcctggggttttaccagtgccgacccggcgccgacgcagtttgaagcggtgcagaaa
ttcgccgattggggctttcagatcagcccacttatgttgcgggccaagtcagccgaagag
ctgatcgcccaatacaagctcatcgagagccaacgctcgtcactgggctatgatattgat
ggcgtcgtctacaaggtcgaccaacttgaactgcagcgccgctggggctttgtgacgggc
gagccgcgctgggccatcgcccacaagttcccggccgaacaggcgacgaccactgtgcgc
gacatcgaaattcaggtgggccgcaccggcacgctggcgccgatcgcgcggcttgatccg
gtgagcgtcggcggggtcaccgtggtcaatgcgactcttcacaacgaggactatattgcc
ggccgcgacagcaatgggctgccgatccgcgacggcaaggacatccgcatcggcgatacc
gtcaccatccagcgggcaggggacgtcattccgcaaatcgtcgacgtcgtcatcgagaag
cgcccggccgccgcggaggccttccacatgcccgaaacctgcccggtctgcggctcgccg
gcagtgcgcgaaatcaacgagaagaccggcaaggaagattcccgccgccgttgcaccggc
gagctgttctgcccggcgcaggcggtggagagcctccgtcatttcgtttctcgcggcgcc
atggacatcgaaggcctgggggcggagaacatcgagctcttgttcagcaaggacctcgtc
aagacgccggccgatatcttcacgctcaaggacaagcgtgccgaggttcagcgtgctttc
gccgagcgccgcgaagagcaggcacgccagcgcgaagcggcttccggaaaggcgcgcaag
aatgtgcgcagcgtcgaggaccgcaattatgaggggctggacaagctcttcgccgccatc
gatgcccgccgcgaccccgaactggaccgcttcatctttgcgctcggcatccgccatatc
ggggaaaccaccggcgccgtcctcgcccgcaccttcggcacgatcgagaagctgcaggaa
gcgggaagggagatggccgctgcggacgacccgatgggcgttttcccctcggttgacggc
atcggcagcacggtggtcgaggcgctggtcgaattttttggcaacgagcgcaacaacgag
gcgctcgcggcgctcctcgcgcaggtccggcccaagccctatgtggtcaccatttcagcc
gacagccaggtggcggggaaaacggtggtcttcaccggcacgctcgaaaaaatgtcacga
tctgaagccaaggctatggccgaacggctgggggcgaaggtcgccggttcagtttcggcc
aagaccgatatcctggttgccgggcccggcgccggctccaagctcaagcaggcgcaggag
catggggtggaagtgatcagcgaagacgaatggtttgccagggtcggcaaatag
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