Devosia rhodophyticola: PSQ90_13745
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Entry
PSQ90_13745 CDS
T09920
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
drp
Devosia rhodophyticola
Pathway
drp03030
DNA replication
drp03410
Base excision repair
drp03420
Nucleotide excision repair
drp03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
drp00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
PSQ90_13745 (ligA)
03410 Base excision repair
PSQ90_13745 (ligA)
03420 Nucleotide excision repair
PSQ90_13745 (ligA)
03430 Mismatch repair
PSQ90_13745 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
drp03032
]
PSQ90_13745 (ligA)
03400 DNA repair and recombination proteins [BR:
drp03400
]
PSQ90_13745 (ligA)
Enzymes [BR:
drp01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
PSQ90_13745 (ligA)
DNA replication proteins [BR:
drp03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
PSQ90_13745 (ligA)
DNA repair and recombination proteins [BR:
drp03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
PSQ90_13745 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
PSQ90_13745 (ligA)
MMR (mismatch excision repair)
DNA ligase
PSQ90_13745 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
PSQ90_13745 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
PTCB-BRCT
Nlig-Ia
Inj_translocase
Motif
Other DBs
NCBI-ProteinID:
WDR07559
UniProt:
A0ABY7Z1U5
LinkDB
All DBs
Position
2807703..2809841
Genome browser
AA seq
712 aa
AA seq
DB search
MSGIAVEELSEQDARIELERLAAAIAKADLAYHQNDEPEITDAEYDALRRRNVALEERFP
ALVRMDSPSTVVGAAPSEGFDKVRHGIPMLSLGNAFDDDDVKEFVGRARKFFERDKDLKL
VFTAEPKIDGLSASLRYENGIFVRGATRGDGAVGEDITANLRTIADIPQQLKGSGWPDVI
EIRGEVYMTHADFKALNEKSAASGGQVYVNPRNTAAGSLRQLDVSITASRNLKFFTYAWG
ETSAAPAATQFEAVQKFMDWGFKTNSLMIKSADVAVLLEHYRAIEAQRASLGYDIDGVVY
KLDRLDLQERWGFVARAPRWAIAHKFAAEQATTVLTGIDIQVGRTGALTPVARLAPVTVG
GVVVENATLHNEDYIKGLGNSGEPIRNGVDLRIGDTVIVQRAGDVIPQIVDVVLDKRPEG
AAPFVFPHICPECGSEAVREINEKTGRRDAIRRCTGELICPAQAVENLKHFVSRNALDID
GLGDRQISQFYAEGRIARPADIFTLRTRDERALKKLKDAEGFGAVSVKKLFDAIDDRREP
ELDRFIFALGIRHVGETTAALMARTFGTMEAFREAAVRAAHVDGDAHEVFPSINGVGEVV
RQSVISFFANDRNIQALDDLLKEVHPKPYVVTISADSEVAGKTVVFTGSLEKMTRSEAKA
MAERHGAKVAGSVSAATDILVAGPGAGSKLKKAEEAGVKVISEEDWFTLIGK
NT seq
2139 nt
NT seq
+upstream
nt +downstream
nt
ttgtctggcattgcggtcgaagaactgagtgagcaggacgcgcggattgaattggaacgg
cttgcggccgccatcgccaaggctgatctggcctaccaccagaatgatgagccagaaatt
accgacgccgaatatgatgcgctgcggcgtcgcaatgtggcgttggaggagcggtttccg
gcgctggtacggatggacagcccctccacggttgttggtgccgcgccatcggaaggtttt
gacaaggttcggcacggcattccaatgctcagcctcggcaatgcgtttgatgatgatgac
gtcaaagaattcgtggggcgggcacgcaagtttttcgagcgcgacaaggacctcaagctg
gtatttacggccgagcccaagatcgacggactttctgcgtccctgcgctatgagaacggc
atattcgtgcgtggtgcgacgagaggcgatggcgcggttggcgaggacattaccgctaac
ctcagaaccatcgccgacattccccaacagctgaaaggaagtggctggcctgacgtcatt
gaaatccgtggcgaagtctatatgacccacgccgacttcaaggcgctcaacgaaaaatcc
gctgccagcggtggtcaggtttatgtcaatccgcgcaataccgccgccgggtcgctgcgg
caattggacgtttcgataacagccagccgcaatctgaagtttttcacctatgcctggggt
gagacttctgcggcgccagcggccacccagtttgaagcggtgcagaaatttatggattgg
ggtttcaagaccaattcgctgatgatcaagtccgctgatgtcgccgtcttgttggaacat
taccgtgccatcgaggcccaaagggcaagccttggctatgatatcgacggggtggtttac
aagctcgaccgactggatctgcaggaacgatggggttttgtcgcccgggcaccgcgatgg
gctattgcgcacaagtttgcagccgagcaggcaacgacagtgctgacggggattgatatt
caagtcggacgaacgggagcgttgacgccggtggcgcgcctggcgccggtgaccgttggc
ggggtggtggtggaaaatgccacgcttcataatgaggactatatcaagggtttgggaaac
agtggcgagccgatccgcaatggggtggatctgcgcattggcgatacagtgattgtgcag
cgtgccggggacgttattccccagattgttgacgtggtgctcgataaacggcccgaaggg
gctgcgccgtttgtatttccccatatctgtcctgagtgtggttcggaagctgttcgtgag
atcaacgaaaaaaccggacggcgtgacgccatcaggcgttgcactggcgagttgatttgt
ccggcgcaggcagttgaaaatctcaagcatttcgtgtcgcgcaacgcgctggatattgat
gggcttggcgaccggcaaatttctcaattttatgcggaagggcgaattgcccgaccggca
gatatttttacgctgcggacgcgagatgagcgggcgttgaaaaagctcaaggacgcggag
gggtttggcgctgtttcggtcaaaaaactgtttgatgccattgatgatcggcgcgaaccg
gaactggatcggttcatttttgctttgggcatccgccatgttggggagacgacggcggcg
ttgatggccaggacatttggcaccatggaagcgttccgggaggcggcagtgcgggccgcg
catgtggatggcgatgcgcacgaggttttcccctcgatcaatggagtgggagaagttgtg
cggcagtcggtgatttcgtttttcgccaatgatcgaaacattcaggcgcttgatgatctg
ctgaaggaagttcaccccaagccgtatgtcgtgacaatttcggccgatagcgaggtggct
ggcaaaacagttgtgtttactggttcgctcgaaaaaatgacacgatcggaggccaaggct
atggccgagcgccacggcgcgaaggtggctggctcggtatcggcggctactgatattctg
gtggcggggccgggtgccggttccaaactcaaaaaggccgaagaggccggggtcaaggtg
atcagtgaagaggactggttcacgctgatcggcaagtag
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