Desulfohalobium retbaense: Dret_0801
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Entry
Dret_0801 CDS
T00989
Name
(GenBank) DNA ligase, NAD-dependent
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
drt
Desulfohalobium retbaense
Pathway
drt03030
DNA replication
drt03410
Base excision repair
drt03420
Nucleotide excision repair
drt03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
drt00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
Dret_0801
03410 Base excision repair
Dret_0801
03420 Nucleotide excision repair
Dret_0801
03430 Mismatch repair
Dret_0801
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
drt03032
]
Dret_0801
03400 DNA repair and recombination proteins [BR:
drt03400
]
Dret_0801
Enzymes [BR:
drt01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
Dret_0801
DNA replication proteins [BR:
drt03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
Dret_0801
DNA repair and recombination proteins [BR:
drt03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
Dret_0801
NER (nucleotide excision repair)
GGR (global genome repair) factors
Dret_0801
MMR (mismatch excision repair)
DNA ligase
Dret_0801
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
Dret_0801
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
Nlig-Ia
DNA_ligase_ZBD
BRCT_2
PTCB-BRCT
RNA_ligase
MutL
BTG
HHH
Zn_ribbon_NUD
DUF4796_N
DZR_2
Motif
Other DBs
NCBI-ProteinID:
ACV68092
UniProt:
C8X0Z5
LinkDB
All DBs
Position
949100..951136
Genome browser
AA seq
678 aa
AA seq
DB search
MAEQSVQSRVASLRETIRHHDYLYYVLDAPQISDNEYDALFKELQALEHRYPELDDPASP
TKRVGQKPLAAFAHREHSLPMASLDNVFSLEEFQTYVQRLERLLPGEEITFWVDPKMDGL
AVEVIFEAGRYVAACTRGDGRVGEDVTAQMRTVRTVPLQLREEGVEVPDYIEVRGEVVMH
EDDFALLNKRQTENGARPFANPRNAAAGSVRQLDPEVTAKRPLRFFAYGVGVVRWSGAKT
VWSRQSEVMQGLRELGLPVAPKARWAESAAAVQTYYQDLGANRHSLGFEIDGVVAKVDRL
EQQHRLGSTSRAPRWALALKFPAHQAETVLEDIQVQVGRTGVLTPVAVLRPVEVGGVTVS
RATLHNEDEIRAKGLRVGDPVLVQRAGDVIPEVVRPLTDKRTGEEKTFVFPQTCPACGSP
VSRLGDEVARRCVNAACPAQVVQQLIHFVSKAGLDIEGLGERWVQIFVDQGLVRSPADLF
RLKERDLVPLERMGDKSARNMIQAIASAKSSARLDQLISALGIRLVGRRTAEILATSFED
LEALAEADSETLQHIPDIGPEVAASLRRFFTTPANQALIRDLHQLGVWPRRETGNGSDAD
QSAPLEGLRFVLTGALSDMSRSAAKDAIESRGGKVVSAVSSKVDYVVAGENPGSKLDKAR
ELDIAVLDETGLHDLLAG
NT seq
2037 nt
NT seq
+upstream
nt +downstream
nt
atggccgagcagtctgttcaaagccgggtggcctccttgcgcgaaaccattcggcaccac
gattatctctattatgtcctggatgctccccagataagcgataacgagtatgacgccctg
tttaaggaactccaggcgctggaacaccggtaccccgagttggatgaccccgcctcaccc
accaagcgggtggggcagaaacctttggctgcctttgcccaccgcgaacacagtctcccc
atggccagtctggacaatgttttttccctggaggaattccagacctatgtccagcgtctg
gagcgactccttcccggtgaagagatcaccttctgggttgatcccaagatggacggactg
gcggtcgaggtgatttttgaggccggccggtatgtcgcggcttgcacccggggcgatggc
cgggtgggcgaggacgtcaccgcccagatgcgtacggtgcgcactgtccctttgcaattg
cgcgaagaaggggtcgaggtgcccgactacatcgaggtccgcggggaggtggtcatgcat
gaagacgattttgccctgctcaacaaacggcaaaccgagaacggagcccgcccatttgcc
aacccgcgcaatgccgcggctggttcggtgcgccaattggacccggaagtgacggccaaa
cgcccgttacgttttttcgcgtatggcgtcggagtggtgcgctggtccggagcaaaaacg
gtctggtcgcggcagtccgaggtcatgcaggggttgcgcgaactgggactgccggttgcc
cccaaagcccgctgggccgagagtgctgcagcggtgcagacctattaccaggaccttggc
gccaaccgccactcgctgggctttgaaatcgatggggtggtggccaaggtggaccggctc
gagcaacagcaccgtctgggcagcacttcccgggcgccccgctgggctttggccttgaaa
tttcccgcccaccaggcggagacggtattggaagatatccaggtccaagtggggcgcacc
ggggtcttgactcccgtggccgtgctgcggccggtggaggttgggggcgtcacggtctcc
cgggccacgctgcacaatgaagatgagatccgggccaagggccttcgagtgggcgatccg
gtgcttgtccagcgcgccggagacgtcattccggaagtggtgcgtcctttgactgacaaa
cgtaccggagaggagaaaacatttgttttcccccagacctgcccggcgtgcggcagcccg
gtttctcggctcggcgatgaagtggccaggcggtgcgtgaacgccgcctgtccggcccag
gtcgttcagcaactcatccattttgtctccaaggccgggctggatattgaaggtctgggg
gagcgctgggttcagattttcgtggaccaggggctggtccgctccccggctgacctcttt
cggctgaaggaaagagacctggtgccgctggagcgcatgggcgataaatcggcccggaac
atgatccaggccattgcaagcgccaaatcctcggcccggctggaccaacttatcagtgcc
ctgggcatccggctggtagggcggcggaccgccgaaatcctggctacctcgtttgaggac
cttgaggccctggcggaggccgattctgaaactctgcagcacatcccggatatcggaccg
gaagtggccgcctcactgcgccgtttttttaccaccccggccaaccaggcgctcattcgg
gatctgcaccaacttggcgtgtggccacggcgcgagactggcaacggatctgatgcggac
cagtctgcccctctggaaggactgcgttttgttctgaccggggcgttgtcggacatgagc
cggagtgcggccaaggatgctatcgagtcccgtgggggcaaggtggtcagcgctgtttcc
agtaaggtggattacgtggtcgctggggagaatccgggcagcaagctggataaggcccgg
gaactggatatcgccgttctcgacgagacggggcttcacgaccttttggctgggtag
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