Devosia salina: K1X15_12165
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Entry
K1X15_12165 CDS
T07996
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
dsal
Devosia salina
Pathway
dsal03030
DNA replication
dsal03410
Base excision repair
dsal03420
Nucleotide excision repair
dsal03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
dsal00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
K1X15_12165 (ligA)
03410 Base excision repair
K1X15_12165 (ligA)
03420 Nucleotide excision repair
K1X15_12165 (ligA)
03430 Mismatch repair
K1X15_12165 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
dsal03032
]
K1X15_12165 (ligA)
03400 DNA repair and recombination proteins [BR:
dsal03400
]
K1X15_12165 (ligA)
Enzymes [BR:
dsal01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
K1X15_12165 (ligA)
DNA replication proteins [BR:
dsal03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
K1X15_12165 (ligA)
DNA repair and recombination proteins [BR:
dsal03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
K1X15_12165 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
K1X15_12165 (ligA)
MMR (mismatch excision repair)
DNA ligase
K1X15_12165 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
K1X15_12165 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
BRCT
HHH_2
DNA_ligase_ZBD
PTCB-BRCT
Nlig-Ia
DUF4796_N
Motif
Other DBs
NCBI-ProteinID:
QYO75401
UniProt:
A0ABX8W9M4
LinkDB
All DBs
Position
complement(2500751..2502925)
Genome browser
AA seq
724 aa
AA seq
DB search
MSEPSQKDVVDLSEDEARAELERLAAAIEAADVAYHQQDRPEITDAEYDALKRRNDAIEQ
AFPELVRPDSPSGRVGAAPAEGFAKVRHGVPMLSLANAFSDEDVTDFVARARKFFMADIL
RDPDFVLAFTAEPKIDGLSASLRYEDGVFVRGATRGDGTEGEDITENLKTIGDIPHRLQG
SGWPAVIEIRGEVYMTHAEFKRLKEHSAKFGGQDYVNPRNTAAGSLRQKDPRITASRNLN
FFAYAWGIAEDAEGNARPPAATQTEVVRKFKEWGFVTNPLMIKTQSAEELIAQYRQIEAQ
RATLGYDIDGVVYKLDRLDLQQRWGFVARAPRWAIAHKFPAEQATTILTGIDIQVGRTGA
LTPVARLQPVTVGGVVVENATLHNEDYIKGIGNNGEPIRNGVDLRVGDTVIVQRAGDVIP
QIVDVVLDKRPEGAAPFQFPHLCPACGSEAVRELNEKTGKLDSVRRCTGEMICPAQAVEN
LKHFVARDALDIDGLGDKQVAQFYAEGRIARPADIFTLKARDERAIKKLKDADGFGPVSV
KKLFDAIDARRAPELDRFIYALGIRHVGETTAALLAKEFGTIERFREVALAAAHHADGHS
VFPEIGGIGETVQASIMAFFANERNVQALDDLLAEVQPQPYVVTISADSVVAGKTVVFTG
SLEKMTRSEAKAMAERLGAKVAGSVSGATDILVAGPGAGSKLKKAEELGIEVISEDEWFE
RVGK
NT seq
2175 nt
NT seq
+upstream
nt +downstream
nt
atgtctgaaccctcccaaaaagacgttgtcgatctctccgaagacgaggcccgcgccgag
cttgagcgattggcggcggcgatcgaggcggcggatgtcgcctatcaccagcaggaccgg
ccggagatcaccgacgcggaatatgacgcgctcaagcgccgcaatgacgcgatcgaacag
gcgtttcccgagctggtgcggcccgatagcccgtcgggccgggtgggggcggccccggcg
gaaggctttgccaaggtgcgccatggcgtgcccatgctcagcctcgccaatgccttttcc
gatgaagacgtgaccgatttcgtggcgcgggccaggaagttcttcatggccgacatcctg
cgcgaccccgatttcgtgctggccttcactgccgaacccaagatcgacggtctctcggcc
tcgctgcgctatgaggacggcgtgttcgtgcgcggggccacccgtggcgacggcaccgag
ggcgaggacatcaccgagaacctcaagaccatcggcgatatcccccacaggctccagggt
tcgggctggccggcggtgatcgaaatccgcggcgaggtctatatgacccatgccgagttc
aagcggttgaaggagcattcggcgaagttcggcgggcaggattatgtcaatccgcgcaac
accgccgccgggtcgctgcgccagaaggatcccaggatcaccgccagccgcaacctcaat
ttcttcgcctatgcctggggcattgccgaagacgccgaaggcaatgcccggccgccggcg
gcaacgcagaccgaggtggtgcgcaagttcaaggaatggggctttgtcaccaatccgctg
atgatcaagacgcagtcggccgaggagctgattgcgcaataccgccagatcgaggcgcag
cgcgccacgctcggctatgacattgacggggtggtctataagctcgaccggctcgacctg
cagcagcgctggggttttgtcgcgcgcgcgccgcgctgggccatcgcccacaaattcccc
gccgaacaggcaaccaccatcctgaccggcatcgatatccaggtcggccgcaccggggcg
ctgacgccggtggcgcggctgcagccggtgacggtgggtggcgtggtggtcgaaaacgcc
acgctgcacaatgaggattacatcaagggcatcggcaataatggcgagccgatccgcaat
ggcgtcgatctgcgcgtgggcgatacggtcatcgtgcagcgggccggcgatgtcatcccg
cagattgtcgatgtggtgctcgacaagcgcccggaaggggcggcgccgtttcaattccca
catctctgcccggcctgtggatcggaggccgtgcgcgagctcaacgaaaagaccggcaag
ctcgacagcgtcaggcgctgcaccggcgagatgatctgcccggcccaggcggtcgagaac
cttaagcatttcgtggcacgcgatgcgctcgacatcgatgggttgggcgataagcaggtg
gcccagttctatgcggaggggcgcattgcccggccggcggatatcttcacgctcaaggcg
cgggacgaacgggcgatcaagaagctcaaggatgccgacggcttcgggccggtctcggtg
aaaaagctgttcgacgccatcgatgcgcggcgggcgcccgagctcgaccgtttcatctat
gccctgggcatccgtcatgtcggggagaccacggcggccctgctggccaaggaattcggc
acgatcgagcggttccgagaggtggcgctcgcggccgcgcatcatgcggatgggcattcg
gtctttcccgagatcggtggcatcggggagacggtgcaggcctcgatcatggctttcttt
gccaatgagcgaaatgtgcaggcgctcgatgacctgctggccgaagtgcagccgcagccc
tatgtggtcaccatttcggccgatagcgtggtggcaggcaagaccgtggtcttcactggc
tcgctcgaaaagatgacccgttccgaggccaaggccatggccgagcggctgggtgcgaag
gtggctggatcagtctcgggtgcaacagatatactggtcgccggccccggtgccggctcg
aagctgaaaaaggccgaggaattggggatcgaggttatcagcgaagacgaatggttcgag
cgcgtcggcaaatag
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