Desulfovibrio subterraneus: LN040_03495
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Entry
LN040_03495 CDS
T08953
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
dsb
Desulfovibrio subterraneus
Pathway
dsb03030
DNA replication
dsb03410
Base excision repair
dsb03420
Nucleotide excision repair
dsb03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
dsb00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
LN040_03495 (ligA)
03410 Base excision repair
LN040_03495 (ligA)
03420 Nucleotide excision repair
LN040_03495 (ligA)
03430 Mismatch repair
LN040_03495 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
dsb03032
]
LN040_03495 (ligA)
03400 DNA repair and recombination proteins [BR:
dsb03400
]
LN040_03495 (ligA)
Enzymes [BR:
dsb01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
LN040_03495 (ligA)
DNA replication proteins [BR:
dsb03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
LN040_03495 (ligA)
DNA repair and recombination proteins [BR:
dsb03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
LN040_03495 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
LN040_03495 (ligA)
MMR (mismatch excision repair)
DNA ligase
LN040_03495 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
LN040_03495 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
HHH_5
DNA_ligase_ZBD
BRCT
Nlig-Ia
PTCB-BRCT
HHH
Mustang
HHH_8
DUF4796_N
zf-tcix
Motif
Other DBs
NCBI-ProteinID:
WBF69282
LinkDB
All DBs
Position
complement(780397..782880)
Genome browser
AA seq
827 aa
AA seq
DB search
MAGSSLSSDAAERAAQLRKLLQHHNYRYYVLDDPEVTDAEYDILFRELRALEEAHPELAT
PDSPTRKVGGEVMSELESRSHTLRMYSLDNAFSAEEFNDFVQRIVRLEPQADLQFWVDPK
MDGLAMELIYENGVFTAALTRGDGETGEVVTHTMRTVDNLPLRLRDEAGVVPARLEVRGE
VVMSRKDFAAMNARQRKEGGKLFANPRNAAAGSVRQLDSRVAASRPLMFLAYGVGVVEWA
DGASRWNSQQEIMEGLGHLGFQTPPETRLCTGPEEVLAHFDMLGAKRDELPFEIDGMVAK
LNDLALQGALGFTARFPRWAIAFKFPAQQARTRLLDIQIQVGRTGVLTPVAHLEPVEVGG
VVVSRATLHNEDEIRAKDLMINDMVIIQRAGDVIPEVVRAVAEERTGEELVFDFPAECPV
CGSKASREEGEAAWRCMNMACPAVVRQSIIHFVSKAGLDVQGVGKKWIEQLVDRGVVKTP
VDLFALTRLQLMGFERMGPKLAQNFVDAFAMVKTSATLPRLICALGIRHVGEQTARVLAN
HFHTLDALKGAITEELTALPDVGPEVAASIRSFFANEGNIALLEQFRTIELWPVQEEAGA
PAPGDHPLAGKRMVFTGTLPTLKRSAAQKMAEEVGALIAGSVSAKVDYVVAGDDAGSKLA
KAQQLGVAVISEEEFLRLHAAVGAVSEGTGAEEISANEIGTSVIVTGEIGAEEISTDDSG
DDETGTDGVSAHETGQGEAEPVEAGEDEAQGDSGEPVETSAGDDVEPLVGAHPEPSAPDS
GAVPDSGPELGATDASASVSTSDAPEQVKPKKDASAKGIKKDQHSLI
NT seq
2484 nt
NT seq
+upstream
nt +downstream
nt
atggccggttcctctctttcttctgatgctgccgaacgtgctgcgcaactgcgcaagctg
ctgcagcatcacaactaccgctattacgtgctggatgatccggaagtaacggatgcagaa
tacgatatcctgttccgcgagttgcgtgcgctggaagaggcgcaccccgaactggcaacg
ccggattcccccacccgcaaggtaggcggcgaggtgatgtccgagctggaatcgcgctcc
catactctgcgcatgtacagcctcgacaacgccttcagtgctgaggagttcaatgacttt
gtgcagcgtatagtacgccttgagccacaggccgatctgcaattctgggtggaccccaag
atggacggccttgccatggaacttatctatgaaaacggtgtgttcacggcggccctgacg
cgcggcgatggcgaaacaggtgaagtggtgacgcataccatgcgcaccgtggacaatctg
ccgctccggctgcgcgatgaagccggtgtggtgcctgcccgccttgaagtgcgcggcgaa
gtggtgatgagccgcaaggactttgccgccatgaacgcccgtcagcgcaaagagggaggc
aaactgttcgccaatccccgcaacgctgcggcgggctccgtgcggcagctcgattcccgc
gttgcagcttcgcgtcctctcatgtttcttgcctacggtgtgggcgtggtggaatgggca
gacggtgcttcccgctggaattcacagcaggaaatcatggaagggctcggccacctcggt
tttcagacgccgccggagacgcgcctgtgtaccggtcccgaagaagtgctggcgcatttc
gacatgctcggtgccaagcgtgacgagcttcccttcgagattgacggcatggtggccaag
ctgaacgaccttgccctgcagggggcgctcggctttacggcccgttttccccgctgggcc
atagccttcaagtttcccgcacagcaggcgcgtacccgcctgctggatattcagattcag
gtggggcgcactggtgtgctgactccggttgcgcatcttgaaccagtggaggtgggcggt
gttgtcgtatcccgtgccaccctgcacaatgaagacgaaatccgcgccaaggacctgatg
atcaacgacatggtcatcatccagcgtgcgggcgacgtgatacctgaagtggtccgcgcc
gtggccgaagaacgcacgggcgaagaacttgttttcgactttcccgccgagtgccccgtg
tgcggctccaaagcttcacgcgaagagggcgaggccgcgtggcggtgcatgaacatggcc
tgtcctgctgttgtgcggcagtccattatccattttgtctccaaagccggtcttgatgtg
cagggcgtgggcaagaagtggatagagcagcttgtggatcgtggcgtggtgaagacccct
gtggacctctttgcactgaccagattacagctcatgggctttgagcgcatgggccccaag
ctggcgcaaaattttgtggatgcctttgccatggtgaagacttccgcgaccttgccccgc
cttatctgcgcgctcggcatccgccatgtgggcgagcagactgcacgggtgctggcgaac
cattttcatactctcgatgccctgaagggggccatcaccgaggaactgaccgccctgccg
gacgtagggccggaagtggccgcctccatccgctcgttctttgccaacgaagggaacatt
gcccttctggagcagttccgcaccatcgagttgtggcctgtgcaggaagaagcgggagca
ccggccccaggagaccatcctctggccggaaagcgcatggtgttcacgggaaccctgccc
acgctcaagcgttcggccgcgcagaagatggcggaagaggtgggagccttgatcgcgggc
agcgtatccgccaaggtggattatgtggttgccggtgacgatgcgggcagcaagcttgcc
aaggcgcagcaactcggcgttgccgtgatctcggaagaggaatttctgcgtctgcacgca
gctgtcggcgcggtgtctgaagggactggtgcggaagaaatcagcgcaaacgaaatcggc
acaagtgtaatcgttaccggcgaaataggtgcggaagaaatcagtacggacgattccggt
gacgacgagaccggtacggacggagtttctgcgcacgaaacaggacaaggcgaagccgaa
cctgttgaagctggtgaagacgaagcacaaggtgattccggtgaaccggttgaaacatca
gccggagatgacgtagaaccccttgtcggggcgcatccagaaccgtctgcccctgattcc
ggcgcagtacccgattccggtcctgaacttggtgcaacggatgcttctgcgtctgtaagt
acttcagatgctccagagcaagtcaagccgaagaaggacgcctctgcaaaggggataaag
aaagatcagcacagccttatctga
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