Desulfolutivibrio sulfodismutans: GD606_01370
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Entry
GD606_01370 CDS
T06784
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
dsd
Desulfolutivibrio sulfodismutans
Pathway
dsd03030
DNA replication
dsd03410
Base excision repair
dsd03420
Nucleotide excision repair
dsd03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
dsd00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
GD606_01370 (ligA)
03410 Base excision repair
GD606_01370 (ligA)
03420 Nucleotide excision repair
GD606_01370 (ligA)
03430 Mismatch repair
GD606_01370 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
dsd03032
]
GD606_01370 (ligA)
03400 DNA repair and recombination proteins [BR:
dsd03400
]
GD606_01370 (ligA)
Enzymes [BR:
dsd01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
GD606_01370 (ligA)
DNA replication proteins [BR:
dsd03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
GD606_01370 (ligA)
DNA repair and recombination proteins [BR:
dsd03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
GD606_01370 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
GD606_01370 (ligA)
MMR (mismatch excision repair)
DNA ligase
GD606_01370 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
GD606_01370 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
HHH_5
BRCT
Nlig-Ia
DNA_ligase_ZBD
PTCB-BRCT
HHH
Motif
Other DBs
NCBI-ProteinID:
QLA11023
LinkDB
All DBs
Position
312554..314683
Genome browser
AA seq
709 aa
AA seq
DB search
MRPTDGEGVAYGSIDPAARVRELRDLIRHHDHRYYVLDDPQVSDAQYDALFRELQDIEAA
YPELADPTSPTRRVGGAPAEGYVSRPHRQRMYSLDNAMSREEWEAFLERAANALARQGEK
LGAAFWVDPKFDGLALEVVYERGLFVSALTRGDGVTGEDVTENLRTVRSVPLTLAPHAAA
AGLPTPELLEVRGEVVITRQDFYELNEARRAAGEKVFANPRNAAAGSVRQLDPKITASRP
LRFFAYATGESLFPGGAAPWKTHSAMMAALSGYGFSVAREGRVCRAAQVYPFFEELGRKR
LDLPFEIDGAVVKCDDLAVQAALGFTDRAPRFAVALKFPAHEAETVLEKIEVQVGRTRVI
TPVAILAPVSLAGVTVSRATLHNEDEIAAKDLREGDTVVVRRAGDVIPEVVRAVEEKRPP
EGRKPFTFPSDCPSCHTPSVRLPGESARKCVNPDCPGVRLRGVIYFVSKAGLDIEGVGGK
WIEILVARGLLRTPADLFVLTKEQLLELPRMKEKSATKFITAIARARESASLGKCIAALG
IPLVGTRTAKTLAARFTDMDALAGASEEDLTALSDVGPEVARSIREFFAAPEQRELLGRF
KAVGLWPVAVSKAPADVAGPLRGKRFLFTGELVGLPRQEAQTMAEAAGGIVISAVSKKLD
YLVVGDKPGSKLQKARELGCEVIDKAAFLELVRSGPGRAGMVQGRLLPG
NT seq
2130 nt
NT seq
+upstream
nt +downstream
nt
atgcggccgactgacggagaaggcgtggcttacggcagcatcgatccggcggcgcgggtt
cgcgagcttcgcgacctcatccgccaccacgaccaccgctattacgtgcttgacgatccc
caggtcagcgacgcgcagtacgacgcgctttttcgcgagctccaagatatcgaggcggcc
tatccggaactggccgacccgacctcgcccaccagacgggtgggcggcgcgcccgccgag
ggctacgtctcccggccgcaccgccagcgcatgtacagcctggacaacgccatgagccgt
gaggagtgggaggccttcctggagcgggcggcaaacgccctggcccggcagggggaaaag
cttggcgcggcgttctgggtcgatcccaagttcgacggcctggccctggaggtcgtgtac
gagcggggcctttttgtttcggccctgacccggggcgacggggtcaccggcgaggacgtg
accgagaacctgcgcacggtgcgcagcgtgcccctgaccctggcgccccatgccgctgcg
gccggactcccgacgccggagcttctggaggtgcgcggcgaggtggtcatcacccgccag
gatttttatgagctcaacgaggctcgccgggcggccggggagaaggtcttcgccaatccc
cgaaacgcggcggccgggtccgtgcgccagctcgatccgaaaatcacggcctcccgaccc
ttgcggtttttcgcctatgccacgggcgagtccctttttcccggcggcgcggccccctgg
aaaacccattcggccatgatggccgcgctttccggctacggcttttccgtggcccgggag
ggcagggtctgccgggcggcccaggtctatcccttcttcgaggagctgggcagaaagcgg
ctcgatctgccttttgagatcgacggggccgtggtcaagtgcgacgacctggccgtacag
gcggccctggggttcaccgaccgggccccgcgcttcgccgtggcgctgaagtttccggcc
catgaggccgagacggtgcttgaaaaaatcgaggtccaggtggggcgcacccgggtcatc
accccggtggccatcctggccccggtgtccctggccggggtcaccgtatcccgggccacg
ctgcacaacgaggacgagatcgcggccaaggatctgcgcgagggggacacggtggtggtg
cgccgggccggggacgtgatcccggaggtggtgcgggccgtggaggagaagcggccgccg
gaaggccgaaaacccttcacatttccgtcggattgcccgtcctgccataccccgagtgtg
cggctgcccggggagtcggcccgcaagtgcgtcaaccccgactgcccgggggtgcgcctg
cggggcgtcatctatttcgtgtccaaggccgggctggacatcgaaggcgtgggcggcaag
tggatcgagatactggtggcgcgcggcctgctgcgcaccccggcggacctgttcgtcctg
acgaaagagcagcttctggagctgccgcgcatgaaggagaagtccgccacgaagttcatc
acggccatcgccagggccagggaatcggcttcgcttggcaaatgcatcgcggccctgggc
atccccctggtggggacgcgcacggccaagaccctggccgcgaggttcacggacatggac
gccttggccggggcctcggaggaggatctgaccgcgctttccgatgtcggccccgaggtg
gcccgctccatccgggagtttttcgccgcgccggagcagcgggagttgcttggccgtttc
aaggcggtggggctgtggcccgtggccgtgtccaaggccccggcggacgtggccgggccg
cttcgcggcaagcggtttttatttaccggcgagcttgtgggcctgccccggcaggaggcc
cagaccatggccgaggccgccgggggcatcgtgatttcggccgtctcgaaaaagctcgac
tacctggtcgtcggggacaagcccggctcgaagctgcaaaaggcccgggagcttgggtgt
gaggtcatcgacaaggcggccttcctggagcttgtgcgttccggcccaggccgggcgggc
atggtccagggccgccttcttcccggctga
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