Dinoroseobacter shibae: Dshi_0092
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Entry
Dshi_0092 CDS
T00612
Name
(GenBank) NUDIX hydrolase
KO
K08311
putative (di)nucleoside polyphosphate hydrolase [EC:3.6.1.-]
Organism
dsh
Dinoroseobacter shibae
Pathway
dsh03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
dsh00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Dshi_0092
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dsh03019
]
Dshi_0092
Messenger RNA biogenesis [BR:
dsh03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
Dshi_0092
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
NUDIX
NUDIX_4
Motif
Other DBs
NCBI-ProteinID:
ABV91841
RoseoBase:
Dshi_0092
UniProt:
A8LKJ8
LinkDB
All DBs
Position
91122..91604
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AA seq
160 aa
AA seq
DB search
MTPDDIAALPYRKCVGVVLWDGAGRVFTGQRYDSELPAWQMPQGGIEDGEDARTAALREL
VEETGVAVEKVEVLAETPDWIKYDLPPEIVPRIWKGRYKGQAQRWVLMKFLGSDADINIE
TKHPEFSEWRWLEPASVLDSIVPFKRDVYEQVFDAFSDWL
NT seq
483 nt
NT seq
+upstream
nt +downstream
nt
atgacaccggacgatattgcggcattgccctatcgcaaatgcgtgggggtcgtgctctgg
gatggcgctggccgggtgtttaccggccagcgctatgacagcgaactgcccgcctggcaa
atgccccagggcggcatcgaagacggcgaggatgcgcgcacggcggccctccgggagttg
gtcgaggaaaccggcgtggcggtggagaaggtcgaggtgctggcggaaacccccgactgg
atcaaatacgacctgccgccggagatcgtgccgcgcatctggaaagggcgctacaagggc
caggcccagcgctgggtgctgatgaaatttctcggctccgacgcggatatcaacatcgaa
accaagcatcccgagttctccgaatggcgttggctggagcctgcctcggtcctcgacagc
atcgtgccgttcaaacgcgacgtctatgagcaggtcttcgacgccttctcagactggctt
tga
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