Dinoroseobacter shibae: Dshi_0990
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Entry
Dshi_0990 CDS
T00612
Name
(GenBank) putative DNA helicase related protein
Organism
dsh
Dinoroseobacter shibae
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF4011
MTES_1575
DUF3320
AAA_11
AAA_30
AAA_12
AAA_19
AAA_16
Viral_helicase1
AAA_22
DEAD
AAA_25
Helicase_RecD
SLFN-g3_helicase
ResIII
nSTAND3
FtsK_SpoIIIE
DUF559
Adeno_IVa2
PIF1
DAP3
Fer4_NifH
Motif
Other DBs
NCBI-ProteinID:
ABV92732
RoseoBase:
Dshi_0990
UniProt:
A8LS25
LinkDB
All DBs
Position
complement(1009203..1013882)
Genome browser
AA seq
1559 aa
AA seq
DB search
MSDPAISKVLEAARRKLLDTGTRNRLVHVNRANTRANCLNIINERADDVFAILRSQSRKM
RFKAMGKDKSSEGQDMLLALPEPEIPEGADRLTDLFLETPLGPEAQARRLLRLATNAKTA
EEEQGLNILYLAMGFLQWRESPSSETLREAPLILLPVQLIRNERTSTYDILCRDDDIATN
LPLQQRLRTDFGISLPEIEEGEDWKPSDYFAQVRDAISGQPGWALDADGMQLGFFSFAKL
LMHRDLDTATWPEGAFAENDLLRGLLTEGFEAPTPIFGPDDRLDDILDPAEIVQVIDADA
SQTKVIEEVRRGASLVVQGPPGTGKSQTITNLIAAAAHDGKTVLFVAEKMAALSVVHDRL
VRAGLRDICLELHSRTANKKALAQELGRTLMASAQALPGTPDPARLRSTRDNLNRITSLL
HDPLPSSGDTPFRAIAEICGFIGNGAPPPCIPLEGLDELDQCKRDAACAALSKYAEALER
AGPPEQHPFRGTGALDLQPTDLARLEDELTGAASEIEILLSEGQRLADATGLAAPNSLGE
VDALGAALSALAGIPQGAKDWIAPLFEHVSSSRLDEALAVGASWADAKQSAETRFVEAAW
SAQVTSIRTALAKGQASFFSRLFGGYRRASAELAGLLSGPLPKSPSERLALVDEIMKVQS
LRHSLADEEAWLQAMLGPTWRGERTPFSVAASASKWLAGLRATGNIGSSDQLVSSLDAVP
DPEAAAKEIKTKSIACRQRIDAPITRLQLDVVRADLGTDLENASLSEMREAFLQMASDTA
CYGDWVGLARAIASAIDAGAEGVVDAVADERVPPQRAAQEFAYACAEARWNAARGARPEL
NDLPQLDRHDLVALFSDLEKERIDTARNLILSRHFEQMPRGTMGEMGIIRGEIARKRGHK
PIRWVMRNAGPMVQRIKPVMLMSPISVAQFLPPGSAEFDILVIDEASQIKPEDALGVIAR
ARQIVVVGDQKQLPPTSFFDRLVDDVEENDDEEEAVVGATAADMESILSLCEARGLRQRM
LEWHYRSRDPSLIQISNAEFYEDRLVLPPSPLQLDPDYGLKFRRVPGIYARGGSGLGRQG
TNRIEAEAVVAAMADHARNWPELSLGVVAFSKAQSNMLTEVLELARRRDPVLDAFLREGK
SEDVFVKNIENVQGDERDVILISVGYGPQEPNGRLPSMSFGPVNGEGGERRLNVLFSRSR
VRCEVFASFDPGDIDPSRSSREGPRLLKRFLDFAKTGQIETHTVTGLEADSPFEEDVARV
IRSEGFLADAQVGSAGFRIDIGVRHPDQPGQYLLAVECDGAAYHAALWARERDRLRQGIL
ENLGWRFHRIWSTDWFHHRSREVEKLRAAIVEAREALNDGVQVRGANQGATNIPASEEVS
EHQPETIDIGHLALTAPPYVRAELSVRSSVEPHEAPVQQLSELVSRIVAIEGPIHADEIA
RRIAAAFGRSRTGNRIADAASRAVRLALQRDTELRRDGAFLMTSAQAETPPVRDRSSETG
TVLKAEYLPPSEIAAAAKLVLKESGEVGQDDLVRAVARLFGFQRVGTDLSEAIRNGLPK
NT seq
4680 nt
NT seq
+upstream
nt +downstream
nt
ttgtcagatccagcgatttcgaaagtgctcgaagcggctcgccgcaagctgctggacacc
gggactcgtaaccgcctcgtccatgtaaaccgggcaaacacacgcgcaaattgcctcaac
atcatcaatgaacgcgccgacgacgtctttgccattcttcgcagccaatcgcgcaagatg
cgcttcaaggccatgggaaaggataagtccagcgaagggcaggacatgcttctggccctg
ccagagcccgagatccccgagggtgcggaccgcttaacggatctcttcctagagactcca
cttggcccggaggcacaggcacgcagactacttcggctggcaacgaacgccaagacagca
gaggaggagcagggcctcaacatcctctacctcgccatgggcttcctgcaatggcgcgaa
agcccctcctccgagacgctgcgtgaagctcctctgatcttgctgcctgtgcaactgatc
cgcaacgagcggacgtcgacctacgatattctgtgccgcgacgacgacatcgccactaac
ttgccactgcaacaacgcctcaggaccgacttcggcatttcactgccggagatcgaggag
ggcgaagactggaaaccctctgactattttgcccaggttcgagacgcgatctccggccag
ccgggatgggcgctggacgcggacggaatgcagctcggcttcttctccttcgccaagctt
ctgatgcatcgcgatctcgataccgcgacctggcccgagggagcttttgccgaaaacgat
ttgttgcgtgggctgttgaccgaagggttcgaagcgccgacgcccattttcgggccggac
gatcgattggacgatatcctggaccctgcggaaattgtgcaggtcatcgacgctgatgcc
tcacaaaccaaggtgatcgaggaggtaaggaggggtgcaagccttgtggtacagggaccg
cctggaaccggaaaatcccagacgattactaacctgatcgcggcagctgctcatgacgga
aagaccgtgctcttcgtcgctgagaagatggctgctttgtcggttgtacacgatcgcctt
gtgcgggcagggttacgcgacatttgcctcgaactgcactcgcgtacagccaacaagaag
gcgcttgcgcaggagttgggacggactttgatggcgagcgcccaggcattgcctggcacg
cctgaccccgcgcgactgcgcagcacacgggacaatttgaaccggatcacttcgttgctc
catgatcctctgccatcctccggcgatacaccgttccgcgcaattgccgagatctgtggg
ttcattggaaatggcgcaccgccaccttgcatcccgcttgagggccttgacgagcttgac
caatgcaagcgcgacgccgcctgcgctgccctgtccaaatatgccgaggcactggaacgc
gcgggcccgcctgaacagcacccctttcgaggcaccggtgcgcttgacttacagccgacg
gacctagcgcgccttgaagacgaactcaccggcgctgcttctgaaatcgaaatactcctg
agcgaaggccaacgcctcgctgacgctactggtttggcagcgcccaattcattgggcgag
gttgacgctcttggcgctgcgctgagtgcgcttgccggtattccgcagggcgccaaggac
tggattgctccgctcttcgagcacgttagttcctcccgcctcgatgaagcgcttgcagtg
ggtgcatcttgggccgacgcgaagcagtctgcagaaacacgtttcgtcgaggctgcatgg
tctgcccaagtcacaagcattcgaacggcattggccaaggggcaagcctcgttcttctct
cgtctcttcggaggatatcgacgggcatcggcggaacttgctggtctgctttcgggacct
ttgccgaagtcgccatcagagcgactggcactcgtcgatgagatcatgaaggttcaatcg
ctgcgccactcgctggcagatgaggaagcctggctccaggcgatgctcggtccaacatgg
cgtggtgagcggacccctttttccgtcgccgcctccgcttcgaaatggttggccgggcta
cgggcaaccggcaacattggttcttcggaccaacttgtttcttccctggatgcagtgccc
gacccagaagctgcggccaaagagatcaaaacaaaatccatcgcttgccgccagagaatc
gatgctccgatcacgcggctacaattggatgtggtccgtgccgacttgggcaccgacttg
gaaaatgcatcgttgtcggaaatgcgtgaagcattcttgcagatggcgagcgatacagcc
tgctacggagattgggttgggcttgcccgcgccattgcatccgcgatcgacgccggagct
gaaggggttgtagacgccgttgcagacgaacgcgttccgccgcagcgcgcagcgcaggaa
tttgcctatgcgtgtgcagaggcccgctggaacgccgcaaggggcgcccggcctgagctc
aacgacttaccgcagcttgatcgccatgatctcgtagccctgttctccgacctcgagaag
gagcgcatcgacacagcacgcaacctgatcctctcgcggcacttcgaacagatgcctcgt
ggcacaatgggcgagatgggcatcatccgtggagaaatcgcccgcaagcgcggccacaaa
ccaatccgctgggtgatgcggaatgccggcccgatggttcaacgcatcaagccggtcatg
ctgatgagtccgatttcagtagcgcagttcttgcctccgggcagcgcagagttcgatatt
ctggtgatcgatgaagcctcgcagatcaaacccgaagatgcgttgggagtcattgcccgg
gcacgccagattgtagtggtaggagaccagaaacagcttccgcccacgtcgttcttcgac
cgcttggtcgacgatgtcgaggaaaatgacgacgaagaagaagccgtcgtcggcgccaca
gcggccgatatggaaagcatcctttcgctttgcgaagcccgtggactgcggcaacgcatg
ctcgaatggcactacagatcacgcgatccgtctttgattcagatttcgaatgcggagttt
tatgaagaccggctggttcttcccccctctccgctgcagcttgaccccgactacggcctg
aaatttcggcgcgtccctggcatttatgcgcgcggcggtagcggcttgggccgacaagga
accaaccggatcgaggccgaggccgtcgttgccgctatggccgatcacgcccgcaattgg
cctgagctctctcttggtgtcgtcgccttttccaaggcccagtccaatatgttgacagaa
gtgctcgaactcgcccgccgccgtgatccggtgctggatgcgttcctgcgtgagggcaag
tctgaggacgtcttcgtcaaaaatatcgagaacgttcagggcgacgaacgcgatgtgatc
ctgatctcggttggatacggccctcaggagccgaacgggcgcttaccttcaatgagcttc
ggtccggtcaacggtgaaggcggagaacgacgactgaacgtgcttttctctcgctcgcgg
gtgcgctgcgaggtctttgcgtcattcgatcccggcgatatcgacccgtcacgcagcagc
cgtgaagggccgcgtttgctcaaacggttccttgattttgccaagacgggacagatcgaa
acccacaccgtcaccggcctcgaggccgacagtccgttcgaagaagatgtcgcacgggtg
atccgatcagagggtttcttggcggacgcgcaggttggaagtgcgggctttcgcatcgac
atcggcgtacgacatcccgaccagcccggtcagtatcttctggccgtggaatgtgacggc
gctgcctatcatgcagcgctctgggcgcgcgaacgcgatcggctgagacagggcatactt
gaaaacctcggctggcggttccatcgcatttggagcaccgactggttccaccatcgctca
cgagaagtcgaaaaactaagggctgctattgttgaagcacgcgaagctctcaatgacggt
gtccaagtgcgcggagccaatcaaggagccacaaacataccggcttcggaggaggtttca
gagcatcagccggagactatcgatatcgggcatctcgctttgactgcgccgccctatgta
cgggcggagctctcggtccgctcgtcggtcgaaccgcacgaggcaccggtacagcagctt
tcggagcttgtttcgcgcatcgtagcgattgagggaccgatacacgccgacgagatcgca
cgtcggatcgctgccgccttcggacgctcacgcaccgggaaccgtattgccgatgcagcc
tcccgtgctgttcgattggctctgcaacgcgatactgagctgcgccgggatggcgccttt
ctgatgacgtccgcgcaagcagaaacaccacccgtccgtgatcggagcagcgaaactggg
accgttcttaaggccgaatacctgcctccgagcgagatcgcagccgctgcaaagctggta
ctgaaggaaagcggtgaggttgggcaagatgaccttgttcgggccgtggctcgcctattc
gggttccagagagtcggcactgatctttcggaagcgatacgaaacggcctgccaaaatga
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