Dinoroseobacter shibae: Dshi_1000
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Entry
Dshi_1000 CDS
T00612
Symbol
fadD4
Name
(GenBank) AMP-dependent synthetase and ligase
KO
K01897
long-chain-fatty-acid---CoA ligase [EC:
6.2.1.3
]
Organism
dsh
Dinoroseobacter shibae
Pathway
dsh00061
Fatty acid biosynthesis
dsh00071
Fatty acid degradation
dsh01100
Metabolic pathways
dsh01212
Fatty acid metabolism
dsh02024
Quorum sensing
dsh04146
Peroxisome
Module
dsh_M00086
beta-Oxidation, acyl-CoA synthesis
Brite
KEGG Orthology (KO) [BR:
dsh00001
]
09100 Metabolism
09103 Lipid metabolism
00061 Fatty acid biosynthesis
Dshi_1000 (fadD4)
00071 Fatty acid degradation
Dshi_1000 (fadD4)
09140 Cellular Processes
09141 Transport and catabolism
04146 Peroxisome
Dshi_1000 (fadD4)
09145 Cellular community - prokaryotes
02024 Quorum sensing
Dshi_1000 (fadD4)
09180 Brite Hierarchies
09181 Protein families: metabolism
01004 Lipid biosynthesis proteins [BR:
dsh01004
]
Dshi_1000 (fadD4)
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
dsh04147
]
Dshi_1000 (fadD4)
Enzymes [BR:
dsh01000
]
6. Ligases
6.2 Forming carbon-sulfur bonds
6.2.1 Acid-thiol ligases
6.2.1.3 long-chain-fatty-acid---CoA ligase
Dshi_1000 (fadD4)
Lipid biosynthesis proteins [BR:
dsh01004
]
Acyl-CoA ligase
Long/very long chain acyl-CoA ligase
Dshi_1000 (fadD4)
Exosome [BR:
dsh04147
]
Exosomal proteins
Exosomal proteins of breast milk
Dshi_1000 (fadD4)
Exosomal proteins of breast cancer cells
Dshi_1000 (fadD4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AMP-binding
AMP-binding_C
Motif
Other DBs
NCBI-ProteinID:
ABV92742
RoseoBase:
Dshi_1000
UniProt:
A8LSC8
LinkDB
All DBs
Position
complement(1032645..1034366)
Genome browser
AA seq
573 aa
AA seq
DB search
MEDPTRPWMAFYGPDVRPDIDTPAYRTLGDMIGAVAATYGTAPAFTTCLPNGMNGTLSFA
QVDEMSDAFAVYLREVAGLNPGDRVALQMPNCLSFPVAAFGVFKAGCVLVNVNPLYTAEE
MGKQFLDAEPHALVIVDMFADKIPEATRGHPIPNIVVTRIAEFLPALPRGIVGLVQKYWD
RSVAEIEVPHIRLPDALEAGRRHQADERIEVEGYHQAVAPDDVAVLQYTGGTTGVAKGAM
LTHANLIVNMEQTMELIEGLERGREVVLTALPLYHIFAFSLNMLGFYWMGARNILIPSPR
PLANLKRAFENYRITWMSGVNTLFNGLTNEIWFTDTPPRHLKFAAAGGMALQSSVAERWR
EITGTDVLQGYGLTETSPILSLEPLGKTRSGSIGIPLPATRLACLDDDGKQVAIGDRGEI
AAKGPQVMKGYWNKPEETANVLQNGWFLTGDIGVMDADGYFHIVDRKKDMVVVSGFNVYP
NEVEDCLASHPGIIEAAVIGVPDGATGEAVKAFVVKGDSGLSEADIRAHCKEHLTAYKVP
KRVEFRDELPKSNVGKILRKDLRAEELARTGGA
NT seq
1722 nt
NT seq
+upstream
nt +downstream
nt
atggaagatccaacgcggccctggatggccttctatggcccggacgtccggcccgatata
gacacgcccgcctatcgcaccctgggtgacatgatcggggcggtggccgcgacctatggc
accgcgccggccttcaccacttgcctgcccaacgggatgaacggcaccctgagctttgcc
caggtggacgagatgtcggatgctttcgcggtgtacctgcgcgaggtcgcgggcctgaac
cccggcgaccgggtggcgttgcagatgcccaactgcctgagctttcccgtcgcggccttc
ggggtgttcaaggcgggctgcgtgctggtcaatgtcaacccgctctataccgccgaggag
atgggcaagcagttcctcgatgccgaaccccatgcgctggtcatcgtggacatgttcgcc
gacaagatccccgaggcgacgcgcggccacccgatcccgaacatcgtggtcacacggatc
gcggaatttctgcccgccctgccccggggcatcgtcgggctggtccagaaatactgggac
cgctcggtcgcggagatcgaggtgccccatatccggctgcccgacgcgctggaggctggg
cgccgtcaccaggcggacgagcggatcgaggtggagggctatcaccaggccgtcgccccg
gacgatgtcgcggttctgcagtatacgggcgggaccacgggcgtggccaagggcgcgatg
ctgacccatgccaacctgatcgtgaacatggaacagaccatggagctgatcgaggggctg
gagcggggccgcgaggtcgttctgacggcgctgccgctttatcatatcttcgcgttttcc
ctcaacatgctggggttctactggatgggggcgcgcaatatcctgatcccgtcgccacgg
ccgctggcgaacctcaagcgcgccttcgagaactacaggatcacctggatgagcggggtg
aatacgttgttcaacgggctgaccaacgagatctggttcaccgacaccccgccgaggcac
ctgaaattcgcggccgcgggcggcatggcgctgcaatcctcggtcgcggagcgctggcgc
gagatcaccgggacggatgtgctgcagggttacgggttgaccgaaacctcgccgatcctg
agcctggagcctttgggcaagacccggagcggatccatcggcattcccctgcccgcgacc
cggctggcatgtctggatgacgacggcaagcaggtcgccatcggcgatcgcggggagatc
gcggccaaggggccgcaggtgatgaagggctactggaacaagcccgaggagaccgcaaat
gtcctgcagaacggctggttcctcacgggcgatatcggggtgatggatgcggatggctat
ttccacatcgtcgatcgcaagaaggacatggtcgtggtctcgggcttcaacgtctatccc
aacgaggtggaggattgccttgcctcccatcccggcatcatcgaggcggcggtgatcggg
gtgccggacggggccactggcgaagcggtcaaggcgttcgtggtcaagggtgatagcggg
ctgagcgaggcggatatccgcgcccattgcaaggagcacctgacagcctacaaggtgccg
aaacgggtcgaattccgcgacgagctgccgaagtccaacgtgggcaagatcctgcgaaag
gatctgcgcgccgaggaacttgcccgcacgggaggggcctga
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