Dinoroseobacter shibae: Dshi_1052
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Entry
Dshi_1052 CDS
T00612
Name
(GenBank) spermidine/putrescine-binding periplasmic protein-like protein
KO
K02055
putative spermidine/putrescine transport system substrate-binding protein
Organism
dsh
Dinoroseobacter shibae
Pathway
dsh02024
Quorum sensing
Brite
KEGG Orthology (KO) [BR:
dsh00001
]
09140 Cellular Processes
09145 Cellular community - prokaryotes
02024 Quorum sensing
Dshi_1052
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
dsh02000
]
Dshi_1052
Transporters [BR:
dsh02000
]
ABC transporters, prokaryotic type
Mineral and organic ion transporters
Putative spermidine/putrescine transporter
Dshi_1052
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SBP_bac_6
TAT_signal
TM_PetC
Motif
Other DBs
NCBI-ProteinID:
ABV92794
RoseoBase:
Dshi_1052
UniProt:
A8LSI0
LinkDB
All DBs
Position
1085608..1086777
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AA seq
389 aa
AA seq
DB search
MNQLDFNRRQFMALMGAATATATTALGSRAMASEALKFWAPGIARVGNQDWSDMEARAGI
SIANIAKSARADEAIQKMVVGDGNALYDAMTDNGGGMEDALASQNAIVELDPSRIPNWAN
LVDSYKEGGSSYDTIRHEGRLVAVPYISNADSLAFNHDVIGEELTSWEALFDEQFRGRAA
MQNDYGPTLTNTAVYLKQSGKQDIENPSDMTEAEVKGVCQFLIDLKKKGHFRTFWDGFQN
GVDLLASEEVLVSSCWEPIQIMAARKNGADIRYGTMTEGHQAWNNIIMLTRGGQERGMED
AFYALANVYLDPWFGARTLAGLGFTPQMTGVNAYVEANAADFDDDTRATLAERLARKDAR
MAKPGNAWQNVFPTNIRAYQDWWAQVQAA
NT seq
1170 nt
NT seq
+upstream
nt +downstream
nt
atgaaccagctcgatttcaaccggcgccagttcatggcgctcatgggcgcggcgaccgcg
accgcgaccacggccctcggcagccgggccatggcctccgaggcgctgaagttctgggcc
ccgggcatcgcgcgcgttggcaaccaggactggtccgacatggaagcccgcgccggcatc
agcatcgccaatatcgccaaatccgcccgcgccgacgaggcgatccagaagatggtcgtg
ggcgacggcaacgcgctttacgatgccatgaccgacaatggcggcggcatggaagacgcg
ctcgcctcgcagaacgcgattgtggagctcgacccgtcccgcattcccaactgggccaac
ctggtggacagctacaaggagggtgggtcgtcctatgacaccatccgccacgagggccga
ctggtcgccgtgccctatatctccaacgccgacagcctggccttcaaccacgacgtaatc
ggcgaagagctgaccagctgggaggcgctcttcgacgagcagttccgcggccgcgcggcg
atgcagaacgactatggcccgaccctgaccaacaccgccgtctacctcaagcagtcgggc
aagcaggatatcgagaacccctccgacatgaccgaggccgaggtgaagggtgtctgccag
ttcctgatcgacctcaagaagaagggccatttccgcaccttctgggacgggttccagaac
ggcgtcgacctgctggcgtccgaggaagtgctggtctcctcctgctgggagccgatccag
atcatggccgcgcgcaagaacggcgccgacatccgctacggcacgatgaccgagggccat
caggcctggaacaacatcatcatgctgacccgcggcgggcaggagcgggggatggaggac
gccttctacgccctggccaatgtctatctcgacccgtggttcggggcgcgcaccctcgcg
gggctgggcttcacgccgcagatgaccggggtgaacgcgtatgtcgaggccaacgcggcc
gatttcgacgacgacacccgggcgaccctggccgagcgtctggcgcgcaaggacgcgcgc
atggccaagcccggcaacgcctggcagaacgtgttcccgaccaatatccgcgcctaccag
gactggtgggcccaggtgcaggccgcctga
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